mRNA_E-siliculosus-1a_F_contig1.10.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig1.10.1
Unique NamemRNA_E-siliculosus-1a_F_contig1.10.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig1.10.1 vs. uniprot
Match: D7G6Y5_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G6Y5_ECTSI)

HSP 1 Score: 182 bits (463), Expect = 7.490e-58
Identity = 106/110 (96.36%), Postives = 107/110 (97.27%), Query Frame = 1 
Query:    1 MVRTAFVSVVALSASANAFLAPVPGYSLARTSRASAPIQMVTSATPAVSTSGGNMVSNEDTYTAALKKMEAESLAELEKAFEETAKKAKAESDKIWGDLEAEFAQDVDEA 330
            MVRTAFVSVVALSASANAFLAPVPGYSLARTSRASAPIQMVTSATPAVST  G MVSNE+TYTAALKKMEAESLAELEKAFEETAKKAKAESDKIWGDLEAEFAQDVDEA
Sbjct:    1 MVRTAFVSVVALSASANAFLAPVPGYSLARTSRASAPIQMVTSATPAVSTGEGKMVSNEETYTAALKKMEAESLAELEKAFEETAKKAKAESDKIWGDLEAEFAQDVDEA 110
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1.10.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G6Y5_ECTSI7.490e-5896.36Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1contigE-siliculosus-1a_F_contig1:93386..94775 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size333
Model size333
Exons2
Ec32 orthologEc-01_011760.1
Ec32 ortholog descriptionexpressed unknown protein
Hectar predicted targeting categorychloroplast
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927498.0491757-CDS-E-siliculosus-1a_F_contig1:93385..936121622927498.0491757-CDS-E-siliculosus-1a_F_contig1:93385..93612Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1 93386..93612 -
1696318551.5454698-CDS-E-siliculosus-1a_F_contig1:93385..936121696318551.5454698-CDS-E-siliculosus-1a_F_contig1:93385..93612Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1 93386..93612 -
1622927498.0889723-CDS-E-siliculosus-1a_F_contig1:94669..947751622927498.0889723-CDS-E-siliculosus-1a_F_contig1:94669..94775Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1 94670..94775 -
1696318551.5542414-CDS-E-siliculosus-1a_F_contig1:94669..947751696318551.5542414-CDS-E-siliculosus-1a_F_contig1:94669..94775Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1 94670..94775 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1.10.1prot_E-siliculosus-1a_F_contig1.10.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig1 93386..94775 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig1.10.1

>prot_E-siliculosus-1a_F_contig1.10.1 ID=prot_E-siliculosus-1a_F_contig1.10.1|Name=mRNA_E-siliculosus-1a_F_contig1.10.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=111bp
MVRTAFVSVVALSASANAFLAPVPGYSLARTSRASAPIQMVTSATPAVST
SGGNMVSNEDTYTAALKKMEAESLAELEKAFEETAKKAKAESDKIWGDLE
AEFAQDVDEA*
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mRNA from alignment at E-siliculosus-1a_F_contig1:93386..94775-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig1.10.1 ID=mRNA_E-siliculosus-1a_F_contig1.10.1|Name=mRNA_E-siliculosus-1a_F_contig1.10.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=1390bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1:93386..94775- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGGTTCGCACAGCGTTTGTCTCGGTGGTTGCCCTCTCCGCGTCGGCGAA
TGCTTTCCTCGCACCTGTGCCTGGATACTCGCTCGCACGGACCTCGCGTG
CGTCTGGTGAGTGTAGATACTGTATGATCGCAGTGTGGCAAAGACCTCAT
TCTCGCATGCGTGCTATTTCTACCGGTATTGCCGGTGTTGCGGCCGTCGC
TGCTCTCCGTGCGTTGCTGTTGCATGTGAGAGCGTTGTGCTGTTTTGTTC
GGGGTTAGTTGTTTTGATGTGACATGTTGCTGGCGCTCCAGCAATTGCTG
CTGCATATATAGTACGCTTCTCGCGCTAGACATTCTATGCTGAAACGGTA
TTGGGCTTGTTTGGAACAGAAAGGCCGGACTAAGTACGCCGCTGGGCACG
CGGTGTTGCTCCAAGCTTCCTTCTTTTCGTTTTTGCAAGACGGTTACAGC
TGCTCTCCAACGTTCCCATGGTATATACTACAATAGAGAGTAGCCGAGAG
AACCGGTATCATTCCTTGACCCGCTCTGGTTGGATTGTGATTTGTGTTGG
ATGTGTGGTATCTACAAGCCGTCTCGAGGCATGCCGGCAACCAAATACGA
CGGCTGGCTGTGTCTGTGTCAAGTACCGCTGCTGCTGCTGCTGTTATGGC
TTGTACTCGATGAACACGTCCCCGTGGTCGAATCCCACCTCCGTTAGCAT
TAGCCTTCACGAAACCATTTTCCAGTGCATGATGCATGATCATCTACAGG
AGGCGATGCTCTCACTTGGCGTGATGTATAGCATGCATGCGTCTGCCGGC
AAGGCAAGAGGAACGATTGCTTCATTGATGGGTGTGCATATTTATCGTCC
ATGCAACGCACGCAAACTGAGATGATGAACGTGGATGAAAAGTGGTAGCC
GCGTTTTCAGGAGCCTTAGCACTCTGTGCCGCGGTTTCTTGTCCGAACCA
AGTTTTTCTTCGAAGGCTCGGCGCCACGACGTGTAGCAACGTTTCGAAGT
ACACACGGCAACCACGCGTGAGTGATTTATTTTCCGTTGATCCGACACAT
CCACACCATCCACAACCCGAATGGATCTGCAAATCCCTTCCGGTCCCCCC
ACTCACCGCAATCCCACCAATCTGCTGCTACACCGCCACCTTGTCAACCA
AACCACGCGACAGCCCCGATTCAGATGGTGACGAGCGCGACCCCGGCAGT
TAGCACAAGCGGGGGCAACATGGTTTCGAACGAGGATACGTACACGGCAG
CCTTGAAGAAGATGGAGGCCGAGAGCCTTGCAGAGCTGGAGAAGGCGTTC
GAGGAAACCGCGAAGAAGGCCAAGGCAGAGTCTGACAAGATCTGGGGGGA
CCTCGAGGCGGAATTCGCCCAGGATGTGGACGAGGCGTGA
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1:93386..94775-

>mRNA_E-siliculosus-1a_F_contig1.10.1 ID=mRNA_E-siliculosus-1a_F_contig1.10.1|Name=mRNA_E-siliculosus-1a_F_contig1.10.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=666bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1:93386..94775- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGGTTCGCACAGCGTTTGTCTCGGTGGTTGCCCTCTCCGCGTCGGCGAA
TGCTTTCCTCGCACCTGTGCCTGGATACTCGCTCGCACGGACCTCGCGTG
CGTCTGATGGTTCGCACAGCGTTTGTCTCGGTGGTTGCCCTCTCCGCGTC
GGCGAATGCTTTCCTCGCACCTGTGCCTGGATACTCGCTCGCACGGACCT
CGCGTGCGTCTGCCCCGATTCAGATGGTGACGAGCGCGACCCCGGCAGTT
AGCACAAGCGGGGGCAACATGGTTTCGAACGAGGATACGTACACGGCAGC
CTTGAAGAAGATGGAGGCCGAGAGCCTTGCAGAGCTGGAGAAGGCGTTCG
AGGAAACCGCGAAGAAGGCCAAGGCAGAGTCTGACAAGATCTGGGGGGAC
CTCGAGGCGGAATTCGCCCAGGATGTGGACGAGGCGTGACCCCGATTCAG
ATGGTGACGAGCGCGACCCCGGCAGTTAGCACAAGCGGGGGCAACATGGT
TTCGAACGAGGATACGTACACGGCAGCCTTGAAGAAGATGGAGGCCGAGA
GCCTTGCAGAGCTGGAGAAGGCGTTCGAGGAAACCGCGAAGAAGGCCAAG
GCAGAGTCTGACAAGATCTGGGGGGACCTCGAGGCGGAATTCGCCCAGGA
TGTGGACGAGGCGTGA
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