mRNA_E-siliculosus-1a_F_contig1004.91.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig1004.91.1
Unique NamemRNA_E-siliculosus-1a_F_contig1004.91.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig1004.91.1 vs. uniprot
Match: D7FKN7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FKN7_ECTSI)

HSP 1 Score: 169 bits (429), Expect = 1.500e-52
Identity = 98/115 (85.22%), Postives = 101/115 (87.83%), Query Frame = 1 
Query:    1 MSLSPSSIRAVLKSAGQRVGGVSELERPARPEEIESAVATADGGEGTVSVSSPTGSSRENRSPATRGRSRTSRRGLSVGRGLIPSFL--PRDSKSQPHGRSSGSAGGHRQGQRYG 339
            MSLSPSSIRAVLKSAGQR GGV ELERPARPEEIESAVATADGGEG VSV  P GSSRENRSPATRGRSRT RRGLSVGR L+P+FL   R+ K QPHGRSSGS GGHRQGQRYG
Sbjct:    1 MSLSPSSIRAVLKSAGQRAGGVPELERPARPEEIESAVATADGGEGLVSVGLPAGSSRENRSPATRGRSRTPRRGLSVGRDLMPNFLRAAREPKPQPHGRSSGSVGGHRQGQRYG 115
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BLAST of mRNA_E-siliculosus-1a_F_contig1004.91.1 vs. uniprot
Match: A0A6H5JG62_9PHAE (IPPc domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JG62_9PHAE)

HSP 1 Score: 134 bits (338), Expect = 2.450e-34
Identity = 82/98 (83.67%), Postives = 83/98 (84.69%), Query Frame = 1 
Query:    1 MSLSPSSIRAVLKSAGQRVGGVSELERPARPEEIESAVATADGGEGTVSVSSPTGSSRENRSPATRGRSRTSRRGLSVGRGLIPSFLPRDS-KSQPHG 291
            MSLSPSSIRAV KSAGQR GGVSELERPAR EEIESAVATADG EG VSV  PTGSSRENRSPATRGRSRTSRRGLSVGRGLI +FL   S K  P G
Sbjct:    1 MSLSPSSIRAVFKSAGQRAGGVSELERPARSEEIESAVATADGEEGLVSVGLPTGSSRENRSPATRGRSRTSRRGLSVGRGLISNFLREPSTKMNPAG 98
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1004.91.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FKN7_ECTSI1.500e-5285.22Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JG62_9PHAE2.450e-3483.67IPPc domain-containing protein n=1 Tax=Ectocarpus ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1004contigE-siliculosus-1a_F_contig1004:26318..27072 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop0
Cds size339
Model size339
Exons2
Ec32 orthologEc-09_000910.1
Ec32 ortholog descriptionhypothetical protein
Hectar predicted targeting categoryother localisation
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927509.2459927-CDS-E-siliculosus-1a_F_contig1004:26317..263941622927509.2459927-CDS-E-siliculosus-1a_F_contig1004:26317..26394Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1004 26318..26394 -
1696318558.8461027-CDS-E-siliculosus-1a_F_contig1004:26317..263941696318558.8461027-CDS-E-siliculosus-1a_F_contig1004:26317..26394Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1004 26318..26394 -
1622927509.2583241-CDS-E-siliculosus-1a_F_contig1004:26810..270721622927509.2583241-CDS-E-siliculosus-1a_F_contig1004:26810..27072Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1004 26811..27072 -
1696318558.8562307-CDS-E-siliculosus-1a_F_contig1004:26810..270721696318558.8562307-CDS-E-siliculosus-1a_F_contig1004:26810..27072Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1004 26811..27072 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1004.91.1prot_E-siliculosus-1a_F_contig1004.91.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig1004 26318..27072 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig1004.91.1

>prot_E-siliculosus-1a_F_contig1004.91.1 ID=prot_E-siliculosus-1a_F_contig1004.91.1|Name=mRNA_E-siliculosus-1a_F_contig1004.91.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=113bp
MSLSPSSIRAVLKSAGQRVGGVSELERPARPEEIESAVATADGGEGTVSV
SSPTGSSRENRSPATRGRSRTSRRGLSVGRGLIPSFLPRDSKSQPHGRSS
GSAGGHRQGQRYG
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mRNA from alignment at E-siliculosus-1a_F_contig1004:26318..27072-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig1004.91.1 ID=mRNA_E-siliculosus-1a_F_contig1004.91.1|Name=mRNA_E-siliculosus-1a_F_contig1004.91.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=755bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1004:26318..27072- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGAGCTTGAGCCCAAGCTCCATCCGCGCGGTTCTCAAGTCGGCTGGTCA
ACGCGTGGGAGGCGTATCTGAACTGGAGCGACCTGCGAGGCCGGAAGAAA
TCGAATCGGCTGTCGCTACAGCTGATGGTGGGGAGGGCACCGTTTCGGTA
AGTTCGCCAACAGGATCGTCTCGCGAAAACCGGTCGCCGGCGACGCGAGG
CCGGTCGAGGACGTCTCGGCGCGGCCTGAGCGTCGGCAGAGGCCTCATAC
CAAGCTTCCTCCGTGAGCCATCGATGAACATGAATCCCGCCGGAGCAGCC
AAGGAAGTCGAACTTGGAACGCCCACTGGGATGGCGGACGGACAGACACC
GAGCCCCGCCGTTGTTGCGCTCCCTGATTCAGGGGTGAAGCCACAACAGC
GGCAAGGAGCAGGGGCAGCGGTAGCAACTCGGAGTCAACCGCAACCCTCA
GCGCCACCACCTACGACATTGCGACGTCGCGTGAGCATGAGCCTGAACCC
TAGCAACTTGAAGCGGGCTGTGGGTCTCGAATCCGGCCAAGAGAGCAAGA
AGAAGAGCGACGCCACCAACAGGAGCCCAGACGCACCCGAGTACGAAGAG
GAGTTCGTCGGAGTCTCAGAACAACAAGCACCGCCCGCGAGAGTCCACCC
TCGTCCTCGCGCTGTCGCCAACGCGCAGCGAGGGATTCCAAGTCTCAACC
CCACGGCCGCTCGAGCGGCAGTGCCGGCGGCCATCGCCAAGGCCAACGGT
ACGGC
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1004:26318..27072-

>mRNA_E-siliculosus-1a_F_contig1004.91.1 ID=mRNA_E-siliculosus-1a_F_contig1004.91.1|Name=mRNA_E-siliculosus-1a_F_contig1004.91.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=678bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1004:26318..27072- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGAGCTTGAGCCCAAGCTCCATCCGCGCGGTTCTCAAGTCGGCTGGTCA
ACGCGTGGGAGGCGTATCTGAACTGGAGCGACCTGCGAGGCCGGAAGAAA
TCGAATCGGCTGTCGCTACAGCTGATGGTGGGGAGGGCACCGTTTCGGTA
AGTTCGCCAACAGGATCGTCTCGCGAAAACCGGTCGCCGGCGACGCGAGG
CCGGTCGAGGACGTCTCGGCGCGGCCTGAGCGTCGGCAGAGGCCTCATAC
CAAGCTTCCTCCATGAGCTTGAGCCCAAGCTCCATCCGCGCGGTTCTCAA
GTCGGCTGGTCAACGCGTGGGAGGCGTATCTGAACTGGAGCGACCTGCGA
GGCCGGAAGAAATCGAATCGGCTGTCGCTACAGCTGATGGTGGGGAGGGC
ACCGTTTCGGTAAGTTCGCCAACAGGATCGTCTCGCGAAAACCGGTCGCC
GGCGACGCGAGGCCGGTCGAGGACGTCTCGGCGCGGCCTGAGCGTCGGCA
GAGGCCTCATACCAAGCTTCCTCCCGAGGGATTCCAAGTCTCAACCCCAC
GGCCGCTCGAGCGGCAGTGCCGGCGGCCATCGCCAAGGCCAACGGTACGG
CCGAGGGATTCCAAGTCTCAACCCCACGGCCGCTCGAGCGGCAGTGCCGG
CGGCCATCGCCAAGGCCAACGGTACGGC
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