mRNA_E-siliculosus-1a_F_contig11352.895.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig11352.895.1
Unique NamemRNA_E-siliculosus-1a_F_contig11352.895.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig11352.895.1 vs. uniprot
Match: D8LQR5_ECTSI (Similar to retinoic acid induced 17, partial n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQR5_ECTSI)

HSP 1 Score: 140 bits (354), Expect = 1.060e-36
Identity = 73/75 (97.33%), Postives = 73/75 (97.33%), Query Frame = 1 
Query:   88 QVCKIPGLSVTGLKATLVARIEGYINNQFSLVARSGAGTALAQARVLTEVVQEVSRGYANVLHKRPVGGGGGYSQ 312
            QVCKIPGLSVTGLKATLVARIE YINNQFSLVARSGAGTALAQARVLTEVVQEVSRGYANVLHKRPVGG GGYSQ
Sbjct:    7 QVCKIPGLSVTGLKATLVARIEDYINNQFSLVARSGAGTALAQARVLTEVVQEVSRGYANVLHKRPVGGVGGYSQ 81
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BLAST of mRNA_E-siliculosus-1a_F_contig11352.895.1 vs. uniprot
Match: A0A6H5KI42_9PHAE (SP-RING-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KI42_9PHAE)

HSP 1 Score: 130 bits (326), Expect = 6.640e-33
Identity = 69/76 (90.79%), Postives = 71/76 (93.42%), Query Frame = 3 
Query:   84 RAGVQDPGVVGDGPEGYPGGQNRGVHQQPVQPGSEVGRRDGLGAGSGADGGGARGQQGVRECAAQAARRRRGGVLA 311
            +A VQDPGVV DGPEGYPGGQNRGVHQQP+QPGSEVG RDGLGAGSGADGGGARGQQGV ECAAQAAR RRGGVLA
Sbjct:   50 QASVQDPGVVADGPEGYPGGQNRGVHQQPIQPGSEVGSRDGLGAGSGADGGGARGQQGVCECAAQAARWRRGGVLA 125
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig11352.895.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LQR5_ECTSI1.060e-3697.33Similar to retinoic acid induced 17, partial n=1 T... [more]
A0A6H5KI42_9PHAE6.640e-3390.79SP-RING-type domain-containing protein n=1 Tax=Ect... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig11352contigE-siliculosus-1a_F_contig11352:26..1021 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start0
Stop0
Cds size312
Model size313
Exons3
Hectar predicted targeting categoryother localisation
BRITEko00000,ko00001,ko01000,ko03021,ko04121,ko04812
Best eggNOG OGNA|NA|NA
Best tax levelEukaryota
COG Functional cat.S
EggNOG OGsKOG2169@1,KOG2169@2759
EggNOG free text desc.SUMO transferase activity
GOsGO:0000003,GO:0000902,GO:0001101,GO:0002682,GO:0002683,GO:0002831,GO:0002832,GO:0003006,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0006464,GO:0006807,GO:0006935,GO:0006950,GO:0007154,GO:0007275,GO:0008150,GO:0008152,GO:0009266,GO:0009267,GO:0009408,GO:0009409,GO:0009414,GO:0009415,GO:0009553,GO:0009593,GO:0009605,GO:0009628,GO:0009653,GO:0009787,GO:0009791,GO:0009826,GO:0009856,GO:0009908,GO:0009909,GO:0009910,GO:0009966,GO:0009987,GO:0009991,GO:0010035,GO:0010112,GO:0010113,GO:0010183,GO:0010247,GO:0010286,GO:0010337,GO:0010565,GO:0010646,GO:0010817,GO:0016036,GO:0016043,GO:0016049,GO:0016740,GO:0016925,GO:0018193,GO:0018205,GO:0019222,GO:0019538,GO:0019787,GO:0019789,GO:0022414,GO:0023051,GO:0031323,GO:0031347,GO:0031348,GO:0031667,GO:0031668,GO:0031669,GO:0032101,GO:0032102,GO:0032350,GO:0032446,GO:0032501,GO:0032502,GO:0032989,GO:0033554,GO:0035670,GO:0036211,GO:0040007,GO:0040008,GO:0040011,GO:0042221,GO:0042330,GO:0042594,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043900,GO:0043901,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044464,GO:0044706,GO:0045088,GO:0045824,GO:0048229,GO:0048367,GO:0048437,GO:0048438,GO:0048440,GO:0048467,GO:0048481,GO:0048519,GO:0048580,GO:0048581,GO:0048583,GO:0048585,GO:0048589,GO:0048608,GO:0048731,GO:0048827,GO:0048831,GO:0048856,GO:0048868,GO:0048869,GO:0050776,GO:0050777,GO:0050789,GO:0050793,GO:0050794,GO:0050826,GO:0050896,GO:0050918,GO:0051093,GO:0051171,GO:0051239,GO:0051241,GO:0051301,GO:0051606,GO:0051704,GO:0051716,GO:0060560,GO:0061458,GO:0061659,GO:0061665,GO:0062012,GO:0065007,GO:0065008,GO:0070647,GO:0071496,GO:0071704,GO:0071840,GO:0080134,GO:0090352,GO:0090567,GO:0099402,GO:0140096,GO:1901419,GO:1901564,GO:1901700,GO:1903314,GO:1905957,GO:2000026,GO:2000070,GO:2000241,GO:2000242
KEGG Pathwayko04120,ko04630,ko05160,map04120,map04630,map05160
KEGG koko:K04706,ko:K10706,ko:K16063,ko:K22403
Preferred nameSIZ1
Seed eggNOG ortholog2880.D8LQR5
Seed ortholog evalue2.5e-31
Seed ortholog score141.4
Taxonomic scopeEukaryota
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig11352.895.1prot_E-siliculosus-1a_F_contig11352.895.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig11352 26..1021 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927646.2229295-CDS-E-siliculosus-1a_F_contig11352:25..1151622927646.2229295-CDS-E-siliculosus-1a_F_contig11352:25..115Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig11352 26..115 +
1696318623.0109487-CDS-E-siliculosus-1a_F_contig11352:25..1151696318623.0109487-CDS-E-siliculosus-1a_F_contig11352:25..115Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig11352 26..115 +
1622927646.2349246-CDS-E-siliculosus-1a_F_contig11352:509..5951622927646.2349246-CDS-E-siliculosus-1a_F_contig11352:509..595Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig11352 510..595 +
1696318623.0233593-CDS-E-siliculosus-1a_F_contig11352:509..5951696318623.0233593-CDS-E-siliculosus-1a_F_contig11352:509..595Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig11352 510..595 +
1622927646.2459474-CDS-E-siliculosus-1a_F_contig11352:885..10211622927646.2459474-CDS-E-siliculosus-1a_F_contig11352:885..1021Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig11352 886..1021 +
1696318623.0320632-CDS-E-siliculosus-1a_F_contig11352:885..10211696318623.0320632-CDS-E-siliculosus-1a_F_contig11352:885..1021Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig11352 886..1021 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig11352.895.1

>prot_E-siliculosus-1a_F_contig11352.895.1 ID=prot_E-siliculosus-1a_F_contig11352.895.1|Name=mRNA_E-siliculosus-1a_F_contig11352.895.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=104bp
GRSLTVDGLRHSTSIALRQLKKLRKYELEQVCKIPGLSVTGLKATLVARI
EGYINNQFSLVARSGAGTALAQARVLTEVVQEVSRGYANVLHKRPVGGGG
GYSQ
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mRNA from alignment at E-siliculosus-1a_F_contig11352:26..1021+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig11352.895.1 ID=mRNA_E-siliculosus-1a_F_contig11352.895.1|Name=mRNA_E-siliculosus-1a_F_contig11352.895.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=996bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig11352:26..1021+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
GGGAGGTCTCTCACCGTGGATGGTCTGAGGCATTCGACAAGCATCGCTCT
GCGGCAACTCAAGAAGCTTAGGAAGTACGAGCTAGAGCAGGCGAGTTATT
TAGTCTTTGCCTGGCAGGTGTTTAAGCTCCCGGGTGAACTTCCTCTTGCG
TGTGTAGAGACTGGCGCCAGGATAGATAAGATGGGATGGACACACACAGG
TTTTGAGGACAGCAGCCTTCGCAGGAGTTTTCGTTTATGAAGACATGTTA
GACGAAGCATGCGATTGGGGAAGTCGGGTTAGGTTTTTGTCGGTTCTGCG
TACCCCCCCCCCCCCCCTGTTCTGTTCCTCATTGGTGCAAGTTCGCGCGA
AGCCGGTCCTTTGAGGACGATGGGTGATCGATATGCCGCCGTGCGAGCTT
GCAAGGAACACGCGTCTTAGCGGGGAACGTGGCTTTGAGGAGGCGGTCTC
GATCGGTTTGTGCATGTTTTGCGTTTTTCGACAGGTGTGCAAGATCCCGG
GGTTGTCGGTGACGGGCCTGAAGGCTACCCTGGTGGCCAGAATCGAGGGG
TACATCAACAACCAGTTCAGGTGCTCCCTTGTTGCTGGTGATGGTAGTGG
TGGTCGGTAGTGACGACGGCGTTGTCGTTGTCGTCGTCGTCGGTGGCAGT
GATGGACCGCCTGTCTGTTGTACGCCCCCACCTCATGGTCTATCCGCCAA
GGCATGCAAAACATGAGTACCCCCCCCCCGCCTCCGGCGTCTCCAATATT
TTTAACCGTTGGGTTGTGGTGCACCACTGCTGCCACACACCCCGCGACCC
CCGTTGATTCCCCTGTGCCCCATTTATCTTAAAAACACCTGACGCTACGG
ACGACAACAGCCTGGTAGCGAGGTCGGGCGCCGGGACGGCCTTGGCGCAG
GCTCGGGTGCTGACGGAGGTGGTGCAAGAGGTCAGCAGGGGGTACGCGAA
TGTGCTGCACAAGCGGCCCGTCGGCGGCGGGGGGGGGTACTCGCAG
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig11352:26..1021+

>mRNA_E-siliculosus-1a_F_contig11352.895.1 ID=mRNA_E-siliculosus-1a_F_contig11352.895.1|Name=mRNA_E-siliculosus-1a_F_contig11352.895.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=624bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig11352:26..1021+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
GGGAGGTCTCTCACCGTGGATGGTCTGAGGCATTCGACAAGCATCGCTCT
GCGGCAACTCAAGAAGCTTAGGAAGTACGAGCTAGAGCAGGGGAGGTCTC
TCACCGTGGATGGTCTGAGGCATTCGACAAGCATCGCTCTGCGGCAACTC
AAGAAGCTTAGGAAGTACGAGCTAGAGCAGGTGTGCAAGATCCCGGGGTT
GTCGGTGACGGGCCTGAAGGCTACCCTGGTGGCCAGAATCGAGGGGTACA
TCAACAACCAGTTCAGGTGTGCAAGATCCCGGGGTTGTCGGTGACGGGCC
TGAAGGCTACCCTGGTGGCCAGAATCGAGGGGTACATCAACAACCAGTTC
AGCCTGGTAGCGAGGTCGGGCGCCGGGACGGCCTTGGCGCAGGCTCGGGT
GCTGACGGAGGTGGTGCAAGAGGTCAGCAGGGGGTACGCGAATGTGCTGC
ACAAGCGGCCCGTCGGCGGCGGGGGGGGGTACTCGCAGCCTGGTAGCGAG
GTCGGGCGCCGGGACGGCCTTGGCGCAGGCTCGGGTGCTGACGGAGGTGG
TGCAAGAGGTCAGCAGGGGGTACGCGAATGTGCTGCACAAGCGGCCCGTC
GGCGGCGGGGGGGGGTACTCGCAG
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