prot_E-siliculosus-1a_F_contig11352.895.1 (polypeptide) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_E-siliculosus-1a_F_contig11352.895.1
Unique Nameprot_E-siliculosus-1a_F_contig11352.895.1
Typepolypeptide
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Sequence length104
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig11352.895.1 vs. uniprot
Match: D8LQR5_ECTSI (Similar to retinoic acid induced 17, partial n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQR5_ECTSI)

HSP 1 Score: 140 bits (354), Expect = 1.060e-36
Identity = 73/75 (97.33%), Postives = 73/75 (97.33%), Query Frame = 0 
Query:   30 QVCKIPGLSVTGLKATLVARIEGYINNQFSLVARSGAGTALAQARVLTEVVQEVSRGYANVLHKRPVGGGGGYSQ 104
            QVCKIPGLSVTGLKATLVARIE YINNQFSLVARSGAGTALAQARVLTEVVQEVSRGYANVLHKRPVGG GGYSQ
Sbjct:    7 QVCKIPGLSVTGLKATLVARIEDYINNQFSLVARSGAGTALAQARVLTEVVQEVSRGYANVLHKRPVGGVGGYSQ 81
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BLAST of mRNA_E-siliculosus-1a_F_contig11352.895.1 vs. uniprot
Match: A0A6H5KI42_9PHAE (SP-RING-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KI42_9PHAE)

HSP 1 Score: 57.8 bits (138), Expect = 1.700e-7
Identity = 32/42 (76.19%), Postives = 34/42 (80.95%), Query Frame = 0 
Query:    1 GRSLTVDGLRHSTSIALRQLKKLRKYELEQVC-KIPGLSVTG 41
            GRSLTVDGLR STSIALRQLKKLRKYELEQ   + PG+   G
Sbjct:   21 GRSLTVDGLRQSTSIALRQLKKLRKYELEQASVQDPGVVADG 62
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig11352.895.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LQR5_ECTSI1.060e-3697.33Similar to retinoic acid induced 17, partial n=1 T... [more]
A0A6H5KI42_9PHAE1.700e-776.19SP-RING-type domain-containing protein n=1 Tax=Ect... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Ectocarpus siliculosus 1a female
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 103..104
IPR003034SAP domainSMARTSM00513sap_9coord: 20..54
e-value: 0.0092
score: 25.2
IPR003034SAP domainPROSITEPS50800SAPcoord: 20..54
score: 9.247
IPR036361SAP domain superfamilyGENE3D1.10.720.30coord: 2..93
e-value: 4.7E-9
score: 37.9
IPR036361SAP domain superfamilySUPERFAMILY68906SAP domaincoord: 19..55

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig11352contigE-siliculosus-1a_F_contig11352:26..1021 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Ectocarpus siliculosus 1a female2022-09-29
Diamond blastp: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-16
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig11352.895.1mRNA_E-siliculosus-1a_F_contig11352.895.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalemRNAE-siliculosus-1a_F_contig11352 26..1021 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_E-siliculosus-1a_F_contig11352.895.1 ID=prot_E-siliculosus-1a_F_contig11352.895.1|Name=mRNA_E-siliculosus-1a_F_contig11352.895.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=104bp
GRSLTVDGLRHSTSIALRQLKKLRKYELEQVCKIPGLSVTGLKATLVARI
EGYINNQFSLVARSGAGTALAQARVLTEVVQEVSRGYANVLHKRPVGGGG
GYSQ
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR036361SAP_dom_sf
IPR003034SAP_dom