mRNA_E-siliculosus-1a_F_contig1129.853.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1129.853.1 vs. uniprot
Match: D8LKM2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKM2_ECTSI) HSP 1 Score: 1263 bits (3269), Expect = 0.000e+0 Identity = 735/789 (93.16%), Postives = 738/789 (93.54%), Query Frame = 1
Query: 1 RNTAGGGAASLFNRSEGRQRHSTSAGALNPYEDVADGEGDAAMADEAXXXXXXXXXXXXXXXXXXGAADPNEYTHPLLKYYRMHGRIPPLSFFNTYLCEIVFFWRFMLFTFTVGYKLFLSLAAYYIMNRHWAQIFTPLSTSALVVSWLLTLGCDPRDRVSNQMMNVHFWFHALSEIPDILVWIKNGETLEASETSVKLFWEGSFLMAVEFYLAFQILVVIFSVVSGSVSLYFMANREDGVTEVGEVRQGLEWATMFLWIVVCLLMAHLTPTVGSGSAKALEAMVSQNGGGTDSAATPNMPPPTNAPGLDEAANNLALAMAAERRKGSRAGLTNSPSKGSPPRLSGRKPGTPNGGRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXACWDSFAFWMDQRNTQNNLPVFRLLYFSSTVVYFIVMLGVAAGGIKRGYATAVVGVSFACVCSHWLISIEHPTSTMEIVHLLLHACTEAISVLLWVSVRDWTQAVYTLSAFFAVYPCLFYGIQALKLGLHRKFSDHLGLVREAMKIFVRSSVLLMVLMYLAFECIGCLNSRPEADCAALLYANTQVGLSVVLGFLSFLGLIVMQDITSRHFLSLSFTWPQVAVLTFSLVAVGLCIFSLASRHFSKLTTDLWEHMVELATLFSWYAALLILWIRRPWYDTAWGENDSMSLNEADEEEAGIGEDDD-EEVWEAGSAGDEMSEDAALSAAEKEQGREETPEWARVPTDAGGKPAADLV 2364
RNTA GGAASLF SEGRQRHSTSAGALNPYEDVADGEGDA MADEA XXXXXXXX GAADPNEYTHPLLKYYRMHGRIPPLSFFNTYLCEIVFFWRFMLFTFTVGYKLFLSLAAYYIMNRHWAQIFTPLSTSALVVSWLLTLGCDPRDRVSNQMMNVHFWFHALSEIPDILVWIK GETLE +TSVKLFWEGSFLMAVEFYLAFQILVVIFSVVSGSVSLYFMANREDGVTEVGEVRQGLEW TMFLWIVVCLLMAHLTPTVGSG AKALEAMV QNGGGTDSAATPNMPP NAPGLDEAANNLALAMAAERRKGSRAGLT+SPSKGSPPRLSGRKP TPNGGRXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXX ACWDSFAFWMDQRNTQNNLPVFRLLYFSSTVVYFIVMLGVAAGGIKRGYATAVVGVSFACVCSHWLISIEHPTSTMEIVHLLLHACTEAISVLLWVSVRDWTQAVYTLSAFFAVYPCLFYGIQALKLGLHRKFSDHLGLVREAMKIFVRSSVLLMVLMYLAFECIGCLNSRPEADCAALLYANTQVGLSVVLGFLSFLGLIVMQDITSRHFLSLSFTWPQVAVLTFSLVAVGLCIFSLASRHFSKLTTDLWEHMVELATLFSWYAALLILWIRRPWYDTAWGENDSMSLNEADEEEAGIGEDDD EEVWEAGSAGDE+SEDAALSAAEKEQGREETPEWARVPTDAGG PAADLV
Sbjct: 273 RNTAAGGAASLFKMSEGRQRHSTSAGALNPYEDVADGEGDAPMADEAAAAEGXXXXXXXXESGEGGAADPNEYTHPLLKYYRMHGRIPPLSFFNTYLCEIVFFWRFMLFTFTVGYKLFLSLAAYYIMNRHWAQIFTPLSTSALVVSWLLTLGCDPRDRVSNQMMNVHFWFHALSEIPDILVWIKTGETLE-EDTSVKLFWEGSFLMAVEFYLAFQILVVIFSVVSGSVSLYFMANREDGVTEVGEVRQGLEWTTMFLWIVVCLLMAHLTPTVGSGRAKALEAMVIQNGGGTDSAATPNMPPTANAPGLDEAANNLALAMAAERRKGSRAGLTSSPSKGSPPRLSGRKPSTPNGGRXXXXXXXXXXXXXXXXXXXXXXXXETNGSTALAGNEGAEMMRVSTPTRDXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-ACWDSFAFWMDQRNTQNNLPVFRLLYFSSTVVYFIVMLGVAAGGIKRGYATAVVGVSFACVCSHWLISIEHPTSTMEIVHLLLHACTEAISVLLWVSVRDWTQAVYTLSAFFAVYPCLFYGIQALKLGLHRKFSDHLGLVREAMKIFVRSSVLLMVLMYLAFECIGCLNSRPEADCAALLYANTQVGLSVVLGFLSFLGLIVMQDITSRHFLSLSFTWPQVAVLTFSLVAVGLCIFSLASRHFSKLTTDLWEHMVELATLFSWYAALLILWIRRPWYDTAWGENDSMSLNEADEEEAGIGEDDDDEEVWEAGSAGDEISEDAALSAAEKEQGREETPEWARVPTDAGGNPAADLV 1059
BLAST of mRNA_E-siliculosus-1a_F_contig1129.853.1 vs. uniprot
Match: A0A6H5K6P5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6P5_9PHAE) HSP 1 Score: 1001 bits (2587), Expect = 0.000e+0 Identity = 599/829 (72.26%), Postives = 606/829 (73.10%), Query Frame = 1
Query: 214 EYTHPLLKYYRMHGRIPPLSFFNTYLCEIVFFWRFMLFTFTVGYKLFLSLAAYYIMNRHWAQIFTPLSTSALVVSWLLTLGCDPRDRVSNQMMNVHFWFHALSEIPDILVWIKNGETLEAS------------------------------------ETSVKLFWEGSFLMAVEFYLAFQ-------------------------------------------------------------ILVVIFSVVSGSVSLYFMANREDGVTEVGEVRQGLEWATMFLWIVVCLLMAHLTPTVGSGSAKALEAMVSQNGGGTDSAATPNMPPPTNAPGLDEAANNLALAMAAERRKGSRAGLTNSPSKGSPPRLSGRKPGTPNGGRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXACWDSFAFWMDQRNTQNNLPVFRLLYFSSTVVYFIVMLGVAAGGIKRGYATAVVGVSFACVCSHWLISIEHPTSTMEIVHLLLHACTEAISVLLWVSVRDWTQAVYTLSAFFAVYPCLFYGIQALKLGLHRKFSDHLGLVREAMKIFVRSSVLLMVLMYLAFECIGCLNSRPEADCAALLYANTQ---------------VGLSVVLGFLSFLGLIVMQDITSRHFLSLSFTWPQVAVLTFSLVAVGLCIFSLASRHFSKLTTDLWEHMVELATLFSWYAALLILWIRRPWYDTAWGENDSMSLNEADEEEAGIGEDDDEEVWEAGSAGDEMSEDAALSAAEKEQGREETPEWARVPTDAGGKPAADLV 2364
EYTHPLLKYYRMHGRIPPLSFF TYLCEIVFFWRFMLFTFTVGYKLFLSLAAYYIMNRHWAQIFTPLSTSALVVSWLLTLGCDPRDRVSNQMMNVHFWFHALSEIPDILVWIKNGETL+A +TSVKLFWEGSFLMAVEFYLAFQ ILVVIFSVVSGSVSLYFMANREDGVTEVGEVRQGLEWATMFLWIVVCLLMAHLTPTVGSG AKALE MVSQNGGG SAATPNMP NAPGLDEAANNLALAMAAERRKGSRAGLTNSPSKGSPPRLSGRK TPNGG XXXXXXXXXXXXXXXXXX XXXXXXXXXX D + + RGYATAVVGVSFACVCSHWLISIEHPTSTMEIVHLLLHACTEAISVLLWVSVRDWTQAVYTLSAFFAVYPCLFYGIQALKLGLHRKFSDHLGLVREAMKIF+ SSVLLMVLMYLAFECIGCLNSRPEADCAALLYANTQ VGLSVVLGFLSFLGLIVMQDITSRHFLSLSFTWPQVAVLTFSLVAVGLCIFSLASRHFSKLTTDLWEHMVELATLFSWYAALLILWIRRPWYDTAWGENDSMSLNEADEEEAGIG DDDEEVW+AGS DE+SEDAALSAAEKEQGREETPEWARVPTDAGGKPAAD V
Sbjct: 27 EYTHPLLKYYRMHGRIPPLSFFITYLCEIVFFWRFMLFTFTVGYKLFLSLAAYYIMNRHWAQIFTPLSTSALVVSWLLTLGCDPRDRVSNQMMNVHFWFHALSEIPDILVWIKNGETLQAKHVVFNVLVLVIVWPWVYIAYRRVLTNLRAKYCGHEEDTSVKLFWEGSFLMAVEFYLAFQANGCLTHAPVGEEAICDNIIHSNLISGMNIILIFLVVRVILFKMGDLTITRTLHLELRPYEILVVIFSVVSGSVSLYFMANREDGVTEVGEVRQGLEWATMFLWIVVCLLMAHLTPTVGSGRAKALEVMVSQNGGGGGSAATPNMPSTANAPGLDEAANNLALAMAAERRKGSRAGLTNSPSKGSPPRLSGRKSSTPNGGPRQXXXXXXXXXXXXXXXXXXTAATETNGSTPLAGNEGAEMMRVSTPTREGXXXXXXXXXXEDWVAVDGEDGD-----------------DDKEDDS-----------------------------RGYATAVVGVSFACVCSHWLISIEHPTSTMEIVHLLLHACTEAISVLLWVSVRDWTQAVYTLSAFFAVYPCLFYGIQALKLGLHRKFSDHLGLVREAMKIFLWSSVLLMVLMYLAFECIGCLNSRPEADCAALLYANTQDRYYVVIERSFTFLQVGLSVVLGFLSFLGLIVMQDITSRHFLSLSFTWPQVAVLTFSLVAVGLCIFSLASRHFSKLTTDLWEHMVELATLFSWYAALLILWIRRPWYDTAWGENDSMSLNEADEEEAGIGGDDDEEVWDAGSTRDEISEDAALSAAEKEQGREETPEWARVPTDAGGKPAADFV 809 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1129.853.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig1129.853.1 >prot_E-siliculosus-1a_F_contig1129.853.1 ID=prot_E-siliculosus-1a_F_contig1129.853.1|Name=mRNA_E-siliculosus-1a_F_contig1129.853.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=789bp RNTAGGGAASLFNRSEGRQRHSTSAGALNPYEDVADGEGDAAMADEAAAAback to top mRNA from alignment at E-siliculosus-1a_F_contig1129:1199..19551+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig1129.853.1 ID=mRNA_E-siliculosus-1a_F_contig1129.853.1|Name=mRNA_E-siliculosus-1a_F_contig1129.853.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=18353bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1129:1199..19551+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1129:1199..19551+ >mRNA_E-siliculosus-1a_F_contig1129.853.1 ID=mRNA_E-siliculosus-1a_F_contig1129.853.1|Name=mRNA_E-siliculosus-1a_F_contig1129.853.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=4734bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1129:1199..19551+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |