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Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1118.788.1 vs. uniprot
Match: A0A6H5K220_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K220_9PHAE) HSP 1 Score: 156 bits (395), Expect = 4.010e-42 Identity = 95/101 (94.06%), Postives = 96/101 (95.05%), Query Frame = 3
Query: 96 MPYIRNGQVVAQRSVFRPSIIMEMFWKVLNIIGLFFGTMSAKTPTRKPRKERGYHNYLGXXXXXXXXXXXXXXXXXXXXXXGPNIHTVQPPDSCSIGGGGG 398
MPYIRNGQVVAQRSVFRPSIIMEMFWKVLNI+GLFFGTMS KTPTRKPRKERGYHNYLG XXXXXXXXXXXXXXXXXXX GPNIHTVQPPDSCSI GGGG
Sbjct: 1 MPYIRNGQVVAQRSVFRPSIIMEMFWKVLNIVGLFFGTMSTKTPTRKPRKERGYHNYLGRGXXXXXXXXXXXXXXXXXXXRGPNIHTVQPPDSCSIRGGGG 101
BLAST of mRNA_E-siliculosus-1a_F_contig1118.788.1 vs. uniprot
Match: A0A836CB18_9STRA (Selenoprotein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CB18_9STRA) HSP 1 Score: 65.1 bits (157), Expect = 2.370e-9 Identity = 56/101 (55.45%), Postives = 72/101 (71.29%), Query Frame = 3
Query: 96 MPYIRN-GQVVAQRSVFRPSIIMEMFWKVLNIIGLFFGTMSAKTPTRKPRKERGYHNYLGXXXXXXXXXXXXXXXXXXXXXXGPNIHTVQP-PDSCSIGGG 392
MPY+ + G++VA+RS FR SI+++ FW V+N +GLF +MS+ P R+ +ERG XXXXXXXXXXXXXXXXXXXX GPNI VQ +C+ GGG
Sbjct: 1 MPYLTSDGRIVAKRSPFRLSILLDFFWAVVNFLGLFISSMSSSAPKRERNRERGXXXXXXXXXXXXXXXXXXXXXXXXXXRRGPNIRGVQSLQPACAPGGG 101
BLAST of mRNA_E-siliculosus-1a_F_contig1118.788.1 vs. uniprot
Match: A0A7S0KYN2_MICPS (Hypothetical protein (Fragment) n=1 Tax=Micromonas pusilla TaxID=38833 RepID=A0A7S0KYN2_MICPS) HSP 1 Score: 55.5 bits (132), Expect = 6.010e-6 Identity = 23/40 (57.50%), Postives = 32/40 (80.00%), Query Frame = 3
Query: 93 KMPYIRNGQVVAQRSVFRPSIIMEMFWKVLNIIGLFFGTM 212
+MPY+ NG VV +R+V+RPSI+ +MFW V+N+I FF TM
Sbjct: 29 RMPYVSNGSVVDRRTVWRPSILADMFWSVVNLIVAFFQTM 68
BLAST of mRNA_E-siliculosus-1a_F_contig1118.788.1 vs. uniprot
Match: C1EFU3_MICCC (Uncharacterized protein n=1 Tax=Micromonas commoda (strain RCC299 / NOUM17 / CCMP2709) TaxID=296587 RepID=C1EFU3_MICCC) HSP 1 Score: 55.5 bits (132), Expect = 1.310e-5 Identity = 23/40 (57.50%), Postives = 32/40 (80.00%), Query Frame = 3
Query: 93 KMPYIRNGQVVAQRSVFRPSIIMEMFWKVLNIIGLFFGTM 212
+MPY+ NG VV +R+V+RPSI+ +MFW V+N+I FF TM
Sbjct: 35 RMPYVSNGSVVDRRTVWRPSILADMFWSVVNLIVAFFQTM 74
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Start | 1 |
| Stop | 1 |
| Cds size | 306 |
| Model size | 1815 |
| Exons | 6 |
| Ec32 ortholog | Ec-20_002490.1 |
| Ec32 ortholog description | Selenoprotein SelK/SelG |
| Hectar predicted targeting category | other localisation |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig1118.788.1 >prot_E-siliculosus-1a_F_contig1118.788.1 ID=prot_E-siliculosus-1a_F_contig1118.788.1|Name=mRNA_E-siliculosus-1a_F_contig1118.788.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=102bp
MPYIRNGQVVAQRSVFRPSIIMEMFWKVLNIIGLFFGTMSAKTPTRKPRK
ERGYHNYLGGGGGGGGGDDDGGGGGGGRRRRGPNIHTVQPPDSCSIGGGG
G* back to topmRNA from alignment at E-siliculosus-1a_F_contig1118:2469..7445- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_E-siliculosus-1a_F_contig1118.788.1 ID=mRNA_E-siliculosus-1a_F_contig1118.788.1|Name=mRNA_E-siliculosus-1a_F_contig1118.788.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=4977bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1118:2469..7445- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
GACCTCCCTGCTTCCTGCTTCGTGTACCCACCGCGGAAGCAGAAGTGGGG
TCGCACGGCTTGGCGCGCGAGCGCGCAACACACGTCAAAGCCAAGATGCC
TTACATTCGAAATGGTGAGACAAGTCTGGGACAGAGAGAGACTTAAAAAT
CGCATTCGCCATTTCGGGGATGCGGAGGAATCAGGCGTTGTGCGACTGTC
CGTTGTCTGTTGAACACGTGACGACGTGGTCAAGACTTGTACCGGTTACG
GTTGGGTTGCCTCCGCAGCTGCCCTCTGCCGTGCAAGTACGCGCAAACTT
CGTGTTGGGTACGGCGGCTGGGGGGAGATAGATGACTGCACACCATTAGC
TGGATTTGCAGTTCAAGTGAACCTTACCTGATGAGGAGAAGAACAGCAGT
ACATTCGGCCGTGTGTACAGCAGTACTACTGACTACTGACAGCAGTGTCG
TAGTGGCGAGAGTGACTGGACGCTCGCCGCTACTGCTGTTCCGCCGCTGT
ATTGTGTTGCCTCTTTAGCGGTGGTGCCGCTCTTTCGGGGCTACTGCTGT
TTCACAGCTATGCACGACCCGCTTTGTTGACCATGCCGTCATGCTGCAAT
GCTGCACTGCTGTTTTCCTCCCGGTGTAATTAGTAGTGCTGTGGTTTGCC
CCGTCTCGCCCCGACATAAGGCGTGCATCCCCAGAGCCAGGAAGATAGAT
ATCACGGTTGACAACTGATACTGCTGTAGCACATTTCTCCTCGGAGCGAA
GGGGTATCATCTGTACTGCCGCTGGATTGTAGTCGTGTACGAAGTAGAAG
TGTACTAATGTTCTCCAATGGTGTAGAGTGGGTGGCACCTCTTATGTGTG
GCACCATTCTATGCATACATACAGAACGCGCCACCACTTAAGAACCTCTT
ATTTTGGCCGAGGCTGCGGTTCTTAGTTCCTAGGGATATGCTTCAATGGC
CACTATATAGGTTTTAGTGTAGGGGTTCTTAACTGGGCTCGAAAATGGTG
CTCAAGTTCTTAAATTTTGATTTTTGTGAGGCTCAATTTCTTAACTCCTG
GGTTCTTAAGTGGTGGCGCGTTCTGTATGAGCGACCCACGCGGTGAATCG
CGTTTCGTCGAACCTCTCTCAGCAACCGAGGGTATCCGTGCAAGCGGAAG
AGGCGGGTGTTTTTTACAAGGTCGTAGTCTTAAGCATGATGGGCGCTCGT
GGGATTACACACAACGCAATCATTCCAGACAGACAAAGTTCTCAAAAGGT
AGACAAACGATGGGGCAAACAGCTAGAGGTGTCGTTGACAAGCAAGGAGC
CCACCCAGCGGCAGCATGTGGCGCTCCTGCCGCTCTCGGTGTGCGATTCT
TCCAGCCCTGGAGGGAGATATCTAACTCGTTGGCGGAGGTTGTCGTGAGA
GAGAGCGCAGCAGCCACGCTGTAGGGTAGGCAAACGAAGAGCAGACGACG
TCTATATAGTTGGAGCCTGGAACCGCCGCAGCCGTAGTCGGCGCCTTTTA
AGTAGGAGGTACTCGAAAGACGACAATCAATGCCGGTGGTATCCTCACGC
TGGCGTTGTGGTTGGTGTATGGAAACGCCAAGGGTTACCCTGCATGTAGC
AACTGCCGGGTAGAGGGGGGAGCCGGATGTTTGTGCCACCGAGGCGTGGC
GATTTGGAAGCCGCCCGCCAGGCGAATGGCAGCAGCTCGTACGGCGCTCA
ACGAATCAAAACACGCATCTAAATTCTTACTATGCACACCATGACTCAAA
TACGGGAATATATGTGCTAGTTTAGTTGTAACTCCAAACCCCCTCAAAAC
TGCCGCTGCTGGTGGTGCCTTTCATTTTTCAGGGCAAGTGGTCGCGCAGC
GGTCTGTGTTCAGGCCAAGCATCATCATGGAGATGTTCTGGAAGGTTTTG
AACATCATCGGCCTCTTGTGAGTCGCCCGCACTCCGGTTGTGAGACTATC
TACTGTTATTCATGTGGCGGCCCAGTTCACGGGAACTAACCACGACGCCG
TGGATTCTGAAAGTGTGCCAGTTTGTGGAAGTGAATGCCTATTCTACAGC
AGTAACATCGTTGTGGCAGGAGTGCGAGAGGCTTGTGTACATTCCTCGGG
GATCGCACTCGATCTTAGGTTCGACTGGAGACAAGCCTGTGCTGCACTGC
GTATTGAGTAGATGGATTGAACCCACACGTTTTCGTTGTTTCCCCGGCCG
CTTTTGTGAACGAACCCCCTTCGGTTGGACTGCGGCTTGGACCGGACCAA
ACCGTTCGGGCGAATGGACTCCAAAATCGTCTGGATTCGAAGCTTCGGCA
CCATGTCAGCGGTGAGAGTCAGTAGTAGTTGGTCGACAAAGCGTTCTGAC
AAGCATCGGGCCGCAGGCAGGTGTTCGAAGCGAGATTACAGGACAACCTC
ACCCCACTCCCCGCTGGCTGTTGGATTTAAAAGGCAGCGGTCTGGTCGAG
GCGACTTTTATAGTGCAACCCCACCCCCCTTTTGGCTGTTAGATTGACAA
GGCAGAGGCGATTTTACAGCGCGACCCCACCCCCGGCTGGCTGGTGGATT
CAATTTGTAGCGGCCTCGTCCATTTAGTGGTACCAGCCAAGCCTCCTCCG
TGCCCTTGTCCGACGCAAGGCCTTCCTTTTACCCCGGCTTTTCCTATCCC
ATCCGTTCGGCGACAATCACAGAAAACGCCCACGCGCAAGCCCAGGAAGG
AGCGTGGGTATCACAACTACCTGGGAGGGGGTGGAGGGGGAGGGGGTGGG
GACGATGACGGCGGGGGAGGCGGTGGCGGGAGACGACGAAGAGGGCCAAA
CATCCACACGGTTCAGCCTCCGGGTAGGATACATGCAGTCAGCTTCTGGA
CCCAAGCTTGGGATCCATGCAGTAAGCTCCTGAACCAAGCTTGAGATCCA
CGCAAGCTTCGTGTATTGTATTTGTGGTACGTTGTTCGTTCGTGCTAGAT
AGATAGCGCGCTTGGAATCACGCTTTGTGTTGTTAAGACAGCCGCGCGCA
GAAGGTGTACTAATTATAGCCACAAGAAAGGGATCTTGTGTGGGCAAGTG
TAGGTGCGTTTTGTTCTTCATGGTTAAGACGTCAGGGCTGAGTGTTTCGT
GTCATGGGCATGTTTCTCTCTTAATTCTTCCCGGCGGAAGCTCTTTGCTA
CTGTAATCTGTACCTCCGCCACGAAAAGCAATCGCGTTTTGTCGCCAACT
CACTCCGCGCCCAGCAGAGATGCAGGGATCAAGCACGCACGCCATGATGA
CGATGTGTACCGCGGGCTTATTTATCCGCCGCTCTTCGTGTGCCTGTCGC
GACTTCCGCCCGCACCCCCCGCACCCTTCATGCCGTTCTTGTGTCTTGGC
TAATCCAGACTCGTGCAGCATCGGCGGTGGCGGCGGGTGAGGGTAAGGCC
GCAAGTATACCCGGGACGAAAAGAACGCCTCCATCTTTTTTAGCTCCGTT
GCGGGCGCACGGCAGCTTTTCAGCGCGGGCGGTGCGCCCGAGAGAGGAAT
CGGGGTGATGCGCCGCTCGCGGACACGCTCGCTGCCAACAACAGCAGTGC
AGTGAGAGCACCACCGCGTGTAGTGTGCCGCAGCAGCGTGGACGAGCAAA
ATAAAAAGATGGGAGTGCGACGTTTCGGGGAAGACTTGCGGCCGCCTTTC
GACCGCCGCCTTGAGGGGGCGACAAGCAAGAACGTCAAGGGCCTAAACAG
TGCGGAATGACCAGGAAGCGGAAGCGGGGGGGGGGGGGGAATGGCTTTCA
AAGCCCCCCCCCCTGGAGAGGGAAGGGGGGCGGGGGGGGGAAGGGGGTAG
ATCCCGGGGGGGGCGGGATCATTAAAAAAAAAAAANNNNNNNNCGCGGGG
GGGGGGGGCCACAAAAAAGAGACGGAAGCGACAAAGGGGGGGGGAGGGGA
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGAATGGCTTTCAAAGCCCCCA
TCCCTGGGCCCCCCTCTTCGCCTCCGTACCTGCGGACCGCATTTATCGTC
GGTCGATCTACTCCGTTTGGCCGCGAATGAATGCCGGGTGGTTTCGCCAG
AATATTGCGCATCACCTTTGTGTGCACAAGAGACCGAGGAGAATTGGCTT
GACGCCTTGCCTGGGGCGCGTACTCGAGCTTCCGACTCCTTTCTTCCTTC
ATATGATTTGGGGGGGGGGGGCGCTATGACGTGGCTATTCTTAAAGTGGG
GTTGTCCCCTGGAACTGCCATCGAGAAAATAAATTCGAGTCGTTACCCGC
CTTTAGTGGAAACCCTTGCGGAGTCGCCAGCACTCCATTGTCGGGGTACT
ACTACTACTGCTGTGTTGTGGGAGAGTGTAAAGTGCGTGTTATATCTTGT
GTACGGGTAGCTGTTTCAGGTATCATGAGGGTGTGTGCTAGACGTAGACC
ATGCGCTTCTGTTGTGTTTGGAATGCCGCTAGGTGGTTTTTGTGTTTCTT
TTTTATGTCGCCGAGTGCACTTCCAACATATTTATGAGAGACTTCACACG
ATTCGGGTGAACGAACGAACCGTGAGATTCGAGCGGAATGTACATGTAGT
TTTGGTGATATGATTCCCCATACGAAGAACTCTTGTGTGTGTGGTGTAGG
CTACGGAAGACGCGTATGACTGTTGTGTCATTTGTGTCACCACACTCAAG
GCTCATGAATTTCCTGTCTTGAGTATGCATACGAGAGTACGAGATGGCTT
CGAAGCTCACCTGTTGTGTTCCCGTCGGCGTGTGTGTGTGTGTGTGTGAA
CGCCCAAGACAACCACAAACTACACGTACCAACCAGCGTTTGATCGGTGG
GTGTATGCATACCACTTCCTTTGTCCATGGGCTAAGCTTGCCGGCCACTT
GACAGGCGTAGGTTGTCGGGGAGAAAGTGTGTGGTGACCTGGGTCCCTCG
ACACCCGTCGAACACGAAACACATCGCACTGCACGCGTTCAACGACCAAG
CCCATATGTATGCTTTGCTGTCACGCA back to topCoding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1118:2469..7445- >mRNA_E-siliculosus-1a_F_contig1118.788.1 ID=mRNA_E-siliculosus-1a_F_contig1118.788.1|Name=mRNA_E-siliculosus-1a_F_contig1118.788.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=612bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1118:2469..7445- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGCCTTACATTCGAAATGATGCCTTACATTCGAAATGGGCAAGTGGTCG
CGCAGCGGTCTGTGTTCAGGCCAAGCATCATCATGGAGATGTTCTGGAAG
GTTTTGAACATCATCGGCCTCTTGGCAAGTGGTCGCGCAGCGGTCTGTGT
TCAGGCCAAGCATCATCATGGAGATGTTCTGGAAGGTTTTGAACATCATC
GGCCTCTTCTTCGGCACCATGTCAGCGCTTCGGCACCATGTCAGCGAAAA
CGCCCACGCGCAAGCCCAGGAAGGAGCGTGGGTATCACAACTACCTGGGA
GGGGGTGGAGGGGGAGGGGGTGGGGACGATGACGGCGGGGGAGGCGGTGG
CGGGAGACGACGAAGAGGGCCAAACATCCACACGGTTCAGCCTCCGGAAA
ACGCCCACGCGCAAGCCCAGGAAGGAGCGTGGGTATCACAACTACCTGGG
AGGGGGTGGAGGGGGAGGGGGTGGGGACGATGACGGCGGGGGAGGCGGTG
GCGGGAGACGACGAAGAGGGCCAAACATCCACACGGTTCAGCCTCCGGAC
TCGTGCAGCATCGGCGGTGGCGGCGGGTGAACTCGTGCAGCATCGGCGGT
GGCGGCGGGTGA back to top
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