prot_E-siliculosus-1a_F_contig1118.788.1 (polypeptide) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_E-siliculosus-1a_F_contig1118.788.1
Unique Nameprot_E-siliculosus-1a_F_contig1118.788.1
Typepolypeptide
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Sequence length102
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig1118.788.1 vs. uniprot
Match: A0A6H5K220_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K220_9PHAE)

HSP 1 Score: 156 bits (395), Expect = 9.160e-48
Identity = 95/101 (94.06%), Postives = 96/101 (95.05%), Query Frame = 0 
Query:    1 MPYIRNGQVVAQRSVFRPSIIMEMFWKVLNIIGLFFGTMSAKTPTRKPRKERGYHNYLGXXXXXXXXXXXXXXXXXXXXXXGPNIHTVQPPDSCSIGGGGG 101
            MPYIRNGQVVAQRSVFRPSIIMEMFWKVLNI+GLFFGTMS KTPTRKPRKERGYHNYLG  XXXXXXXXXXXXXXXXXXX GPNIHTVQPPDSCSI GGGG
Sbjct:    1 MPYIRNGQVVAQRSVFRPSIIMEMFWKVLNIVGLFFGTMSTKTPTRKPRKERGYHNYLGRGXXXXXXXXXXXXXXXXXXXRGPNIHTVQPPDSCSIRGGGG 101
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BLAST of mRNA_E-siliculosus-1a_F_contig1118.788.1 vs. uniprot
Match: A0A836CB18_9STRA (Selenoprotein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CB18_9STRA)

HSP 1 Score: 65.1 bits (157), Expect = 1.370e-11
Identity = 56/101 (55.45%), Postives = 72/101 (71.29%), Query Frame = 0 
Query:    1 MPYIRN-GQVVAQRSVFRPSIIMEMFWKVLNIIGLFFGTMSAKTPTRKPRKERGYHNYLGXXXXXXXXXXXXXXXXXXXXXXGPNIHTVQP-PDSCSIGGG 99
            MPY+ + G++VA+RS FR SI+++ FW V+N +GLF  +MS+  P R+  +ERG      XXXXXXXXXXXXXXXXXXXX  GPNI  VQ    +C+ GGG
Sbjct:    1 MPYLTSDGRIVAKRSPFRLSILLDFFWAVVNFLGLFISSMSSSAPKRERNRERGXXXXXXXXXXXXXXXXXXXXXXXXXXRRGPNIRGVQSLQPACAPGGG 101
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BLAST of mRNA_E-siliculosus-1a_F_contig1118.788.1 vs. uniprot
Match: A0A7S0KYN2_MICPS (Hypothetical protein (Fragment) n=1 Tax=Micromonas pusilla TaxID=38833 RepID=A0A7S0KYN2_MICPS)

HSP 1 Score: 55.8 bits (133), Expect = 5.850e-8
Identity = 23/39 (58.97%), Postives = 31/39 (79.49%), Query Frame = 0 
Query:    1 MPYIRNGQVVAQRSVFRPSIIMEMFWKVLNIIGLFFGTM 39
            MPY+ NG VV +R+V+RPSI+ +MFW V+N+I  FF TM
Sbjct:   30 MPYVSNGSVVDRRTVWRPSILADMFWSVVNLIVAFFQTM 68
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BLAST of mRNA_E-siliculosus-1a_F_contig1118.788.1 vs. uniprot
Match: C1EFU3_MICCC (Uncharacterized protein n=1 Tax=Micromonas commoda (strain RCC299 / NOUM17 / CCMP2709) TaxID=296587 RepID=C1EFU3_MICCC)

HSP 1 Score: 55.8 bits (133), Expect = 1.170e-7
Identity = 23/39 (58.97%), Postives = 31/39 (79.49%), Query Frame = 0 
Query:    1 MPYIRNGQVVAQRSVFRPSIIMEMFWKVLNIIGLFFGTM 39
            MPY+ NG VV +R+V+RPSI+ +MFW V+N+I  FF TM
Sbjct:   36 MPYVSNGSVVDRRTVWRPSILADMFWSVVNLIVAFFQTM 74
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BLAST of mRNA_E-siliculosus-1a_F_contig1118.788.1 vs. uniprot
Match: A0A329S4D4_9STRA (Uncharacterized protein n=2 Tax=Phytophthora TaxID=4783 RepID=A0A329S4D4_9STRA)

HSP 1 Score: 48.1 bits (113), Expect = 4.620e-5
Identity = 21/45 (46.67%), Postives = 30/45 (66.67%), Query Frame = 0 
Query:    1 MPYIRNGQVVAQRSVFRPSIIMEMFWKVLNIIGLFFGTMSAKTPT 45
            M Y+  G VVA+RS +R SI+ +MFW V+N +GLF  T+ +   T
Sbjct:    1 MTYVSGGDVVAKRSPWRLSIVTDMFWGVINFVGLFVTTIFSDPST 45
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1118.788.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A6H5K220_9PHAE9.160e-4894.06Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A836CB18_9STRA1.370e-1155.45Selenoprotein n=1 Tax=Tribonema minus TaxID=303371... [more]
A0A7S0KYN2_MICPS5.850e-858.97Hypothetical protein (Fragment) n=1 Tax=Micromonas... [more]
C1EFU3_MICCC1.170e-758.97Uncharacterized protein n=1 Tax=Micromonas commoda... [more]
A0A329S4D4_9STRA4.620e-546.67Uncharacterized protein n=2 Tax=Phytophthora TaxID... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Ectocarpus siliculosus 1a female
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR024491Selenoprotein SelK/SelGPFAMPF10961SelK_SelGcoord: 3..99
e-value: 2.3E-13
score: 50.6
NoneNo IPR availablePANTHERPTHR16875:SF0SELENOPROTEIN Kcoord: 1..96
NoneNo IPR availablePANTHERPTHR16875FAMILY NOT NAMEDcoord: 1..96
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..19
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 42..101
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 20..41
NoneNo IPR availablePRODOMPD353114coord: 1..56
e-value: 0.003
score: 90.0
NoneNo IPR availableTMHMMTMhelixcoord: 15..37

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1118contigE-siliculosus-1a_F_contig1118:4056..7350 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Ectocarpus siliculosus 1a female2022-09-29
Diamond blastp: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-16
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1118.788.1mRNA_E-siliculosus-1a_F_contig1118.788.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalemRNAE-siliculosus-1a_F_contig1118 2469..7445 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_E-siliculosus-1a_F_contig1118.788.1 ID=prot_E-siliculosus-1a_F_contig1118.788.1|Name=mRNA_E-siliculosus-1a_F_contig1118.788.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=102bp
MPYIRNGQVVAQRSVFRPSIIMEMFWKVLNIIGLFFGTMSAKTPTRKPRK
ERGYHNYLGGGGGGGGGDDDGGGGGGGRRRRGPNIHTVQPPDSCSIGGGG
G*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR024491Se_SelK/SelG