mRNA_E-siliculosus-1a_F_contig10018.77.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig10018.77.1
Unique NamemRNA_E-siliculosus-1a_F_contig10018.77.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig10018.77.1 vs. uniprot
Match: A0A6H5K819_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K819_9PHAE)

HSP 1 Score: 80.9 bits (198), Expect = 6.790e-19
Identity = 37/46 (80.43%), Postives = 40/46 (86.96%), Query Frame = 1 
Query:   28 MFTGIQTVLKDMSWRPRRHASAILTENGTPDIMRFLSPFADGKGNL 165
            M+TGIQTVLKDMSWRPRRH S ILTE G PDI+RFLS  A+GKGNL
Sbjct:    1 MYTGIQTVLKDMSWRPRRHVSTILTEYGKPDIVRFLSLLANGKGNL 46
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig10018.77.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5K819_9PHAE6.790e-1980.43Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig10018contigE-siliculosus-1a_F_contig10018:459..1749 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop0
Cds size138
Model size165
Exons2
Hectar predicted targeting categoryno signal peptide or anchor
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig10018.77.1prot_E-siliculosus-1a_F_contig10018.77.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig10018 486..1749 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927507.264419-UTR-E-siliculosus-1a_F_contig10018:458..4851622927507.264419-UTR-E-siliculosus-1a_F_contig10018:458..485Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig10018 459..485 +
1696318557.7713075-UTR-E-siliculosus-1a_F_contig10018:458..4851696318557.7713075-UTR-E-siliculosus-1a_F_contig10018:458..485Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig10018 459..485 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927507.2802107-CDS-E-siliculosus-1a_F_contig10018:485..5201622927507.2802107-CDS-E-siliculosus-1a_F_contig10018:485..520Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig10018 486..520 +
1696318557.7786407-CDS-E-siliculosus-1a_F_contig10018:485..5201696318557.7786407-CDS-E-siliculosus-1a_F_contig10018:485..520Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig10018 486..520 +
1622927507.2923677-CDS-E-siliculosus-1a_F_contig10018:1646..17491622927507.2923677-CDS-E-siliculosus-1a_F_contig10018:1646..1749Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig10018 1647..1749 +
1696318557.7859414-CDS-E-siliculosus-1a_F_contig10018:1646..17491696318557.7859414-CDS-E-siliculosus-1a_F_contig10018:1646..1749Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig10018 1647..1749 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig10018.77.1

>prot_E-siliculosus-1a_F_contig10018.77.1 ID=prot_E-siliculosus-1a_F_contig10018.77.1|Name=mRNA_E-siliculosus-1a_F_contig10018.77.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=46bp
MFTGIQTVLKDMSWRPRRHASAILTENGTPDIMRFLSPFADGKGNL
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mRNA from alignment at E-siliculosus-1a_F_contig10018:459..1749+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig10018.77.1 ID=mRNA_E-siliculosus-1a_F_contig10018.77.1|Name=mRNA_E-siliculosus-1a_F_contig10018.77.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=1291bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig10018:459..1749+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
GAGATTCTTGAGGAGGATGGCGCGAGAATGTTCACTGGCATCCAGACCGT
ATTGAAGGACATGTGAGCAACGAGTAGATGTATCGTTGTGCTACTGCAGT
ACCTGCTGTTGCCTTGTGCTTTTTCGATGGAAGAAATTAGCCTGTTGGGG
GTCTGTTACAACTGTGTGTTTGTACATGAACCGTTTGGGTGATGAGGTTA
TTATGTCCTTGGTAGCGAGTGCAGATGTGGTCTTACACAGCCGCGTGTTT
CTATTGTTTTTGTTCGGGGGCGCGCCCTGTGTTGCTTGTTGCTAATTCTA
GCACCCTAGGGACATGATGTGGCGATTCACTAAGGAACTCCTGGCTTCGT
CGAGTGCCTATTGTCGAAGGGGTGACTTTTGGGACCTGACCTGCTTCACG
AGTCCTTCCTCGCGCAGGTGACAGAATGGGTGTTTGCACGTTGGACTTCA
TTTTACCTGGCAGACTTCCCCTGAACACTACCAACCGATGCCTAAAAGGC
GCCATGGGCAACTTTGATTTCTTCCCACGCCTAGGCCAGGAGTAATTTCG
CTGTATTTATTGTTTCCCGATTTCCGATCCATCGCTTTTCCCGCAACGCT
ACAAGACAAGACACACTTGTGTATTAGCATAGGGAAAGGGGTGCTTATCC
CCCGATTGATACTTACGTCGGAAGTGGAGGCTACTCATGCTTCTACTGTG
TGATCTGGGACCGTGAAGAAACAGAGAACCGACGGTGCTGTTGATAGAAC
CAGCGGGAAGTAGTAAAAGAATGCCTCAGCATGTACCAGAAAAGTATATT
GTCGTTTCAACACTACCCTCTCAGATACCCCGCCCATTCGGCCGAAAAAG
TGGCACACACGTTGAAATCTCCTCCCGGTGTTCTTGATCTGCAAAAATGA
GAAATCTCTCCACCACCCTCGGGGTAGTCGTTTTCGGGATCAAAGATTGC
CCAGCCCTCCGGGACGAACGCAAAGTAGCTACGGCCGTATGCCTTTCGGC
AATCTACAGCTTGCTTCACCTCCGCCGCAGCATAGAAATGACATTTCGCA
TCCTGGACGTACGTCGGAAGATACGCAACTAACGGAATTTGCATGCTTCT
TTGGCTCATCACCCCATCTGCTTACCCGTGGTTTGCCCTTCCCTTCGTTG
CGTTCGGCCACAATTCTTGTGCACATGCTGCACGCCAGGTCATGGCGCCC
TCGTCGCCATGCCTCCGCCATCCTCACAGAGAATGGAACCCCCGACATCA
TGCGCTTCCTCTCCCCATTTGCAGACGGGAAGGGCAACCTC
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig10018:459..1749+

>mRNA_E-siliculosus-1a_F_contig10018.77.1 ID=mRNA_E-siliculosus-1a_F_contig10018.77.1|Name=mRNA_E-siliculosus-1a_F_contig10018.77.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=276bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig10018:459..1749+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGTTCACTGGCATCCAGACCGTATTGAAGGACATATGTTCACTGGCATC
CAGACCGTATTGAAGGACATGTCATGGCGCCCTCGTCGCCATGCCTCCGC
CATCCTCACAGAGAATGGAACCCCCGACATCATGCGCTTCCTCTCCCCAT
TTGCAGACGGGAAGGGCAACCTCGTCATGGCGCCCTCGTCGCCATGCCTC
CGCCATCCTCACAGAGAATGGAACCCCCGACATCATGCGCTTCCTCTCCC
CATTTGCAGACGGGAAGGGCAACCTC
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