Homology
BLAST of mRNA_E-siliculosus-1a_F_contig10018.77.1 vs. uniprot
Match: A0A6H5K819_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K819_9PHAE) HSP 1 Score: 80.9 bits (198), Expect = 6.790e-19 Identity = 37/46 (80.43%), Postives = 40/46 (86.96%), Query Frame = 1 Query: 28 MFTGIQTVLKDMSWRPRRHASAILTENGTPDIMRFLSPFADGKGNL 165
M+TGIQTVLKDMSWRPRRH S ILTE G PDI+RFLS A+GKGNL
Sbjct: 1 MYTGIQTVLKDMSWRPRRHVSTILTEYGKPDIVRFLSLLANGKGNL 46
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Start | 1 |
| Stop | 0 |
| Cds size | 138 |
| Model size | 165 |
| Exons | 2 |
| Hectar predicted targeting category | no signal peptide or anchor |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622927507.264419-UTR-E-siliculosus-1a_F_contig10018:458..485 | 1622927507.264419-UTR-E-siliculosus-1a_F_contig10018:458..485 | Ectocarpus siliculosus Ec863f_EcPH12_90f female | UTR | E-siliculosus-1a_F_contig10018 459..485 + |
| 1696318557.7713075-UTR-E-siliculosus-1a_F_contig10018:458..485 | 1696318557.7713075-UTR-E-siliculosus-1a_F_contig10018:458..485 | Ectocarpus siliculosus Ec863f_EcPH12_90f female | UTR | E-siliculosus-1a_F_contig10018 459..485 + |
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig10018.77.1 >prot_E-siliculosus-1a_F_contig10018.77.1 ID=prot_E-siliculosus-1a_F_contig10018.77.1|Name=mRNA_E-siliculosus-1a_F_contig10018.77.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=46bp
MFTGIQTVLKDMSWRPRRHASAILTENGTPDIMRFLSPFADGKGNL back to topmRNA from alignment at E-siliculosus-1a_F_contig10018:459..1749+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_E-siliculosus-1a_F_contig10018.77.1 ID=mRNA_E-siliculosus-1a_F_contig10018.77.1|Name=mRNA_E-siliculosus-1a_F_contig10018.77.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=1291bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig10018:459..1749+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
GAGATTCTTGAGGAGGATGGCGCGAGAATGTTCACTGGCATCCAGACCGT
ATTGAAGGACATGTGAGCAACGAGTAGATGTATCGTTGTGCTACTGCAGT
ACCTGCTGTTGCCTTGTGCTTTTTCGATGGAAGAAATTAGCCTGTTGGGG
GTCTGTTACAACTGTGTGTTTGTACATGAACCGTTTGGGTGATGAGGTTA
TTATGTCCTTGGTAGCGAGTGCAGATGTGGTCTTACACAGCCGCGTGTTT
CTATTGTTTTTGTTCGGGGGCGCGCCCTGTGTTGCTTGTTGCTAATTCTA
GCACCCTAGGGACATGATGTGGCGATTCACTAAGGAACTCCTGGCTTCGT
CGAGTGCCTATTGTCGAAGGGGTGACTTTTGGGACCTGACCTGCTTCACG
AGTCCTTCCTCGCGCAGGTGACAGAATGGGTGTTTGCACGTTGGACTTCA
TTTTACCTGGCAGACTTCCCCTGAACACTACCAACCGATGCCTAAAAGGC
GCCATGGGCAACTTTGATTTCTTCCCACGCCTAGGCCAGGAGTAATTTCG
CTGTATTTATTGTTTCCCGATTTCCGATCCATCGCTTTTCCCGCAACGCT
ACAAGACAAGACACACTTGTGTATTAGCATAGGGAAAGGGGTGCTTATCC
CCCGATTGATACTTACGTCGGAAGTGGAGGCTACTCATGCTTCTACTGTG
TGATCTGGGACCGTGAAGAAACAGAGAACCGACGGTGCTGTTGATAGAAC
CAGCGGGAAGTAGTAAAAGAATGCCTCAGCATGTACCAGAAAAGTATATT
GTCGTTTCAACACTACCCTCTCAGATACCCCGCCCATTCGGCCGAAAAAG
TGGCACACACGTTGAAATCTCCTCCCGGTGTTCTTGATCTGCAAAAATGA
GAAATCTCTCCACCACCCTCGGGGTAGTCGTTTTCGGGATCAAAGATTGC
CCAGCCCTCCGGGACGAACGCAAAGTAGCTACGGCCGTATGCCTTTCGGC
AATCTACAGCTTGCTTCACCTCCGCCGCAGCATAGAAATGACATTTCGCA
TCCTGGACGTACGTCGGAAGATACGCAACTAACGGAATTTGCATGCTTCT
TTGGCTCATCACCCCATCTGCTTACCCGTGGTTTGCCCTTCCCTTCGTTG
CGTTCGGCCACAATTCTTGTGCACATGCTGCACGCCAGGTCATGGCGCCC
TCGTCGCCATGCCTCCGCCATCCTCACAGAGAATGGAACCCCCGACATCA
TGCGCTTCCTCTCCCCATTTGCAGACGGGAAGGGCAACCTC back to topCoding sequence (CDS) from alignment at E-siliculosus-1a_F_contig10018:459..1749+ >mRNA_E-siliculosus-1a_F_contig10018.77.1 ID=mRNA_E-siliculosus-1a_F_contig10018.77.1|Name=mRNA_E-siliculosus-1a_F_contig10018.77.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=276bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig10018:459..1749+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGTTCACTGGCATCCAGACCGTATTGAAGGACATATGTTCACTGGCATC
CAGACCGTATTGAAGGACATGTCATGGCGCCCTCGTCGCCATGCCTCCGC
CATCCTCACAGAGAATGGAACCCCCGACATCATGCGCTTCCTCTCCCCAT
TTGCAGACGGGAAGGGCAACCTCGTCATGGCGCCCTCGTCGCCATGCCTC
CGCCATCCTCACAGAGAATGGAACCCCCGACATCATGCGCTTCCTCTCCC
CATTTGCAGACGGGAAGGGCAACCTC back to top
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