prot_E-siliculosus-1a_F_contig10010.75.1 (polypeptide) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_E-siliculosus-1a_F_contig10010.75.1
Unique Nameprot_E-siliculosus-1a_F_contig10010.75.1
Typepolypeptide
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Sequence length207
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig10010.75.1 vs. uniprot
Match: A0A6H5K454_9PHAE (SWIM-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K454_9PHAE)

HSP 1 Score: 213 bits (541), Expect = 4.320e-60
Identity = 141/194 (72.68%), Postives = 141/194 (72.68%), Query Frame = 0 
Query:    1 RLSQTFLPDDAVSCLHIQGGGRMVAEVTVVLTSCTGQASVGELDNLVEVTKSTACPRRVHFAAVSKKDRSTPPFPLVRAAPPLFQALDAVLNRESEAEQATYKASLGVQPGSALAAAAKNAAEEAAKTRRQAKQARDAERLRLEIVQIAEARRVEQRKEEEKXXXXXXXXXXXXXXXXNLREGEAQGGGMGAGR 194
            RLSQTFL DDAVSCLHIQGGGRMVAE TVVLTSCTGQASVGELDNLVEVTKSTACPR VHFAAVSKKDRSTPPFPLVRAAPPLFQAL                                            AKQARDAERLRLEIVQIAEARRVEQRKEE  XXXXXXXXXXXXX   NLREGEAQGGGMG GR
Sbjct:  162 RLSQTFLADDAVSCLHIQGGGRMVAEATVVLTSCTGQASVGELDNLVEVTKSTACPRGVHFAAVSKKDRSTPPFPLVRAAPPLFQAL--------------------------------------------AKQARDAERLRLEIVQIAEARRVEQRKEEXXXXXXXXXXXXXXXESENLREGEAQGGGMGVGR 311
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BLAST of mRNA_E-siliculosus-1a_F_contig10010.75.1 vs. uniprot
Match: A0A6H5JP78_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JP78_9PHAE)

HSP 1 Score: 157 bits (398), Expect = 9.010e-42
Identity = 103/188 (54.79%), Postives = 115/188 (61.17%), Query Frame = 0 
Query:    1 RLSQTFLPDDAVSCLHIQGGGRMVAEVTVVLTSCTGQASVGELDNLVEVTKSTACPRRVHFAAVSKKDRSTPPFPLVRAAPPLFQALDAVLNRES------------------------------EAEQATYKASLGVQPGSALAAAAKNAAEEAAKTRRQAKQARDAERLRLEIVQIAEARRVEQRK 158
            R SQTFLP DAVS L + GG R V E TV+LTS   QAS GELDNLVEVTK+T C     FAAVSKKDRSTPPFPLVRAAPPLFQA   V  R                                EAEQA +KASLGVQPG   AAAA  AAEEAA  RRQA++ +  E  +LE+ ++A AR+  QRK
Sbjct:  127 RHSQTFLPGDAVSSLRVGGGDRTVTEATVILTSSCTQASAGELDNLVEVTKATTCCTGCQFAAVSKKDRSTPPFPLVRAAPPLFQAWYQVPRRACCWVCARDDARMQLIFFAADPCDPPIPGAGREAEQAAHKASLGVQPGWEAAAAATRAAEEAAIARRQARKIKAVENRQLELAELANARQHAQRK 314
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig10010.75.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5K454_9PHAE4.320e-6072.68SWIM-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5JP78_9PHAE9.010e-4254.79Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Ectocarpus siliculosus 1a female
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 146..186
NoneNo IPR availableCOILSCoilCoilcoord: 115..138

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig10010contigE-siliculosus-1a_F_contig10010:1710..2492 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Ectocarpus siliculosus 1a female2022-09-29
Diamond blastp: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-16
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig10010.75.1mRNA_E-siliculosus-1a_F_contig10010.75.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalemRNAE-siliculosus-1a_F_contig10010 1708..2492 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_E-siliculosus-1a_F_contig10010.75.1 ID=prot_E-siliculosus-1a_F_contig10010.75.1|Name=mRNA_E-siliculosus-1a_F_contig10010.75.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=207bp
RLSQTFLPDDAVSCLHIQGGGRMVAEVTVVLTSCTGQASVGELDNLVEVT
KSTACPRRVHFAAVSKKDRSTPPFPLVRAAPPLFQALDAVLNRESEAEQA
TYKASLGVQPGSALAAAAKNAAEEAAKTRRQAKQARDAERLRLEIVQIAE
ARRVEQRKEEEKEKRRKDDEEKRRKESENLREGEAQGGGMGAGRGEAAGQ
GVEAGKQ
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