mRNA_E-siliculosus-1a_F_contig1110.751.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig1110.751.1
Unique NamemRNA_E-siliculosus-1a_F_contig1110.751.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1110.751.1 vs. uniprot
Match: A0A6H5K9Y9_9PHAE (16S rRNA (uracil(1498)-N(3))-methyltransferase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9Y9_9PHAE)

HSP 1 Score: 668 bits (1724), Expect = 2.780e-238
Identity = 382/473 (80.76%), Postives = 390/473 (82.45%), Query Frame = 1
Query:  106 MVCRPFLLALLLAPRVREDDAACIAPPGWQTKVRPLLASVATRGHSTCSSRDTRIRVRRGVQTLRSAAGENRAADSANTAGEPSSSXXXXXXSPQAGVSTRRRTEDVGVREIEDGRPLPPLGVPARIAGVDSALVPLPSPPTRAPRVYLNGANLHVGQTVQLTPEQTRYLVSVMRLRDGNPVRVFDGVNGEFLAAVATSXXXXXXXXXXXXXXRLERSGEKIGSGRGGRRGRGKRSAGGAEKVIELR----------------------------LVFAPIRKQRLKMLVEKAVEVGASRLTPVLTARTQKGAVSDASMLDRLGAVTAVEAAEQCERMTVPPVASPVTLASYLQN---------------------GDRSLPDIVFVCKERDVDAPPLLEALAEYEQAFSEQRRQDHVNSSDDSRNANAAFLIGPEGGFDPDEIGALAQYPFVRFVSLGRTVLRAETAAVYAL 1377
            MVCR  L ALLL  RVREDDAACIAPP WQTKVRP LA+VATRGHSTCSSR TRIRVRRGVQTLRSAA ENRAAD ANT GEPSSS XXXX SPQAGV TRRRTE VGVREIEDGRPLPPLGVPARIAGV+ ALVPLPSPPTRAPRVYLNGANLHVGQTVQLTPEQTRYLVSVMRLRDG+PVRVFDGVNGEFLAAVATS              RLERSGEKIGSGRGGRRGRGKRS  GA+KV+ELR                            LVFAPIRKQRLKMLVEKAVEVGASRLTPVLTARTQKGAVSDASMLDRLGAVTAVEAAEQCERMTVPPVASPVTLASYL++                     GD SLPDIVFVCKERDVDAPPLLEALAEYEQAFSE+RRQDHVNSSD SRNANAAFLIGPEGGFDPDEIGALAQYPFVRFVSLGRTVLRAETAAVYAL
Sbjct:    1 MVCRLLLFALLLVRRVREDDAACIAPPRWQTKVRPRLAAVATRGHSTCSSRRTRIRVRRGVQTLRSAA-ENRAADPANTVGEPSSSSXXXXTSPQAGVPTRRRTEGVGVREIEDGRPLPPLGVPARIAGVNPALVPLPSPPTRAPRVYLNGANLHVGQTVQLTPEQTRYLVSVMRLRDGSPVRVFDGVNGEFLAAVATSSSTSSSS-------RLERSGEKIGSGRGGRRGRGKRSTVGADKVVELRVECLTRRQPGIGGGGDGEVEDVDAPEIELVFAPIRKQRLKMLVEKAVEVGASRLTPVLTARTQKGAVSDASMLDRLGAVTAVEAAEQCERMTVPPVASPVTLASYLRSLELRQSSCDLSSIIGLARDRGGDLSLPDIVFVCKERDVDAPPLLEALAEYEQAFSEERRQDHVNSSDGSRNANAAFLIGPEGGFDPDEIGALAQYPFVRFVSLGRTVLRAETAAVYAL 465          
BLAST of mRNA_E-siliculosus-1a_F_contig1110.751.1 vs. uniprot
Match: D7G8G1_ECTSI (16S rRNA (uracil(1498)-N(3))-methyltransferase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8G1_ECTSI)

HSP 1 Score: 402 bits (1032), Expect = 6.980e-136
Identity = 232/300 (77.33%), Postives = 236/300 (78.67%), Query Frame = 1
Query:  625 MRLRDGNPVRVFDGVNGEFLAAVATSXXXXXXXXXXXXXXRLERSGEKIGSGRGGRRGRGKRSAGGAEKVIELR----------------------------LVFAPIRKQRLKMLVEKAVEVGASRLTPVLTARTQKGAVSDASMLDRLGAVTAVEAAEQCERMTVPPVASPVTLASYLQN---------------------GDRSLPDIVFVCKERDVDAPPLLEALAEYEQAFSEQRRQDHVNSSDDSRNANAAFLIGPEGGFDPDEIGALAQYPFVRFVSLGRTVLRAETAAVYAL 1377
            MRLRDGNPVRVFDGVNGEFLAAVATS              RLERSGEKIGSGRGGRRGRGKRSAGGAEKVIELR                            LVFAPIRKQRLKMLVEKAVEVGASRLTPVLTARTQKGAVSDASMLDRLGAVTAVEAAEQCERMTVPP+ASPVTLASYL++                     GDRSLPDIVFVCKERDVDAPPLLEALAEYEQAFSEQRRQDHVNSSDD+RNANAAFLIGPEGGFDPDEIG LAQYPFVRFVSLGRTVLRAETAAVYAL
Sbjct:    1 MRLRDGNPVRVFDGVNGEFLAAVATSSSSSS---------RLERSGEKIGSGRGGRRGRGKRSAGGAEKVIELRVECLTRRQPGIGGGGGGEVEDLDAPEIELVFAPIRKQRLKMLVEKAVEVGASRLTPVLTARTQKGAVSDASMLDRLGAVTAVEAAEQCERMTVPPMASPVTLASYLRSLELRHSSCDGSSIVGLARDRDGDRSLPDIVFVCKERDVDAPPLLEALAEYEQAFSEQRRQDHVNSSDDNRNANAAFLIGPEGGFDPDEIGTLAQYPFVRFVSLGRTVLRAETAAVYAL 291          
BLAST of mRNA_E-siliculosus-1a_F_contig1110.751.1 vs. uniprot
Match: A0A835ZHN8_9STRA (16S rRNA (uracil(1498)-N(3))-methyltransferase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZHN8_9STRA)

HSP 1 Score: 139 bits (349), Expect = 1.630e-34
Identity = 110/270 (40.74%), Postives = 148/270 (54.81%), Query Frame = 1
Query:  625 MRLRDGNPVRVFDGVNGEFLAAVATSXXXXXXXXXXXXXXRLERSGEKIGSGRGGRRGRGKRSAGGAEKV----------------IELRLVFAPIRKQRLKMLVEKAVEVGASRLTPVLTARTQKGAVSDASMLDRLGAVTAVEAAEQCERMTVPPVASPVTLASYL---QNGDRSLPDIVFVCKERDVDAPPLLEALAEYEQAFSEQRRQDHVNSSDDSRNANAAFLIGPEGGFDPDEIGALAQYPFVRFVSLGRTVLRAETAAVYAL 1377
            MRLRDG+ VR F+G +GE+L  ++ +                       GS      G+G+RSA  A  +                +++ L+ API++QR+K+LVEKA E+G + + PVLTA TQ+    DA    RL  + A+EAAEQCER+++P +  P  L   L    +   +    +FVC+ER   +PPLLEALA    A S  R    V SS     A AAFL+GPEGGF  DE   LA  P+++ VSLG TVLRAETAA+YAL
Sbjct:    1 MRLRDGSTVRAFNGRDGEYLCTLSQTD----------------------GSSSSKPAGKGRRSAKPALALQVEQQLRSQAEDSCADLDVWLLCAPIKRQRMKLLVEKATELGVTCIAPVLTAHTQEAL--DAEGTSRLLPI-AIEAAEQCERLSLPHLHPPAPLPELLARWHSEPHTRARQLFVCQERSPQSPPLLEALA----AASAARG---VPSSA----APAAFLVGPEGGFSADEREMLAGLPWIQGVSLGATVLRAETAALYAL 234          
BLAST of mRNA_E-siliculosus-1a_F_contig1110.751.1 vs. uniprot
Match: K2LDN9_9PROT (Ribosomal RNA small subunit methyltransferase E n=9 Tax=Thalassospiraceae TaxID=2844866 RepID=K2LDN9_9PROT)

HSP 1 Score: 139 bits (349), Expect = 2.450e-34
Identity = 103/270 (38.15%), Postives = 143/270 (52.96%), Query Frame = 1
Query:  583 VQLTPEQTRYLVSVMRLRDGNPVRVFDGVNGEFLAAVATSXXXXXXXXXXXXXXRLERSGEKIGSGRGGRRGRGKRSAGGAEKVIELRLVFAPIRKQRLKMLVEKAVEVGASRLTPVLTARTQKGAVSDASMLDRLGAVTAVEAAEQCERMTVPPVASPVTLASYLQNGDRSLPDI--VFVCKERDVDAP---PLLEALAEYEQAFSEQRRQDHVNSSDDSRNANAAFLIGPEGGFDPDEIGALAQYPFVRFVSLGRTVLRAETAAVYAL 1377
            ++L PEQ+ YL  VMRL+ G PV++F+G++GE+L  ++                +L   G+++G                        LVFAPI+KQRL  L+EKAVE+G  +L PV+T   Q G ++D   LDRL A   VEAAEQCER+TVP V  PV L  ++ N    LP+   +  C E    +P    L + LA+   +F            D++   N A +IGPEGGF  DE+  + + PF   VSLG  +LRAETAA+ AL
Sbjct:   24 IELAPEQSHYLEHVMRLKPGTPVKIFNGLDGEWLGTISE---LRKKKGRVTAEQQLREQGQELGP----------------------TLVFAPIKKQRLDFLIEKAVELGVEKLQPVIT---QHG-ITDKVRLDRLQAQV-VEAAEQCERLTVPEVCEPVRLLDWVAN----LPENHRLLFCDETGSGSPIGEVLSQLLAKGAGSFI-----------DNTNVVNHAIVIGPEGGFSADELERIRKQPFATPVSLGPRILRAETAAIAAL 248          
BLAST of mRNA_E-siliculosus-1a_F_contig1110.751.1 vs. uniprot
Match: A0A199YJ05_9PROT (Ribosomal RNA small subunit methyltransferase E n=12 Tax=Thalassospira TaxID=168934 RepID=A0A199YJ05_9PROT)

HSP 1 Score: 138 bits (347), Expect = 4.750e-34
Identity = 103/270 (38.15%), Postives = 142/270 (52.59%), Query Frame = 1
Query:  583 VQLTPEQTRYLVSVMRLRDGNPVRVFDGVNGEFLAAVATSXXXXXXXXXXXXXXRLERSGEKIGSGRGGRRGRGKRSAGGAEKVIELRLVFAPIRKQRLKMLVEKAVEVGASRLTPVLTARTQKGAVSDASMLDRLGAVTAVEAAEQCERMTVPPVASPVTLASYLQNGDRSLPDI--VFVCKERDVDAP---PLLEALAEYEQAFSEQRRQDHVNSSDDSRNANAAFLIGPEGGFDPDEIGALAQYPFVRFVSLGRTVLRAETAAVYAL 1377
            ++L PEQ+ YL  VMRL+ G PV++F+G++GE+L  ++                +L   G ++G                        LVFAPI+KQRL  L+EKAVE+GA  L PV+T   Q G ++D   LDRL A   +EAAEQCER+TVP V  PV L  ++ N    LP+   +  C E    +P    L + LA+   +F            D++   N A +IGPEGGF  DE+  + + PF   VSLG  +LRAETAA+ AL
Sbjct:   24 IELAPEQSHYLEHVMRLKPGTPVKIFNGLDGEWLGTISE---LRKKKGSVTAERQLRAQGNEVGP----------------------TLVFAPIKKQRLDFLIEKAVELGAQSLQPVIT---QHG-ITDKVRLDRLQAQV-IEAAEQCERLTVPEVCEPVRLLDWVAN----LPENHHLLFCDETGSGSPIGEVLSQLLAKGAGSFI-----------DNTNVVNHAIVIGPEGGFSADELERIRKQPFATPVSLGPRILRAETAAIAAL 248          
BLAST of mRNA_E-siliculosus-1a_F_contig1110.751.1 vs. uniprot
Match: UPI00143106BB (16S rRNA (uracil(1498)-N(3))-methyltransferase n=2 Tax=Thalassospira TaxID=168934 RepID=UPI00143106BB)

HSP 1 Score: 137 bits (344), Expect = 1.280e-33
Identity = 98/268 (36.57%), Postives = 137/268 (51.12%), Query Frame = 1
Query:  574 GQTVQLTPEQTRYLVSVMRLRDGNPVRVFDGVNGEFLAAVATSXXXXXXXXXXXXXXRLERSGEKIGSGRGGRRGRGKRSAGGAEKVIELRLVFAPIRKQRLKMLVEKAVEVGASRLTPVLTARTQKGAVSDASMLDRLGAVTAVEAAEQCERMTVPPVASPVTLASYLQNGDRSLPDIVFVCKERDVDAPPLLEALAEYEQAFSEQRRQDHVNSSDDSRNANAAFLIGPEGGFDPDEIGALAQYPFVRFVSLGRTVLRAETAAVYAL 1377
            G  ++L PEQ+ YL  VMRL+ G PV++F+G++GE+L  +                 +L   G ++G                        LVFAPI+KQRL  L+EKAVE+G  RL PV+T   Q G ++D   LDRL +   +EAAEQCER+TVP V  PV L  ++ N   S    +  C E    +P          +  S+   +   +  D++   N A +IGPEGGF  DE+  + +  F   VSLG  +LRAETAA+ AL
Sbjct:   21 GSEIELAPEQSHYLEHVMRLKPGTPVKIFNGLDGEWLGTIIA---LRKKKGSVTADRQLREQGSEVGP----------------------TLVFAPIKKQRLDFLIEKAVELGVERLQPVIT---QHG-ITDKVRLDRLQSQV-IEAAEQCERLTVPEVCEPVRLLDWVANVPES--HHLLFCDETGSGSP--------IGEVLSQLLAKGAGSVIDNTNVVNHAIVIGPEGGFSADELERIRKQSFATPVSLGPRILRAETAAIAAL 248          
BLAST of mRNA_E-siliculosus-1a_F_contig1110.751.1 vs. uniprot
Match: A0A367XFC7_9PROT (Ribosomal RNA small subunit methyltransferase E n=5 Tax=Thalassospira TaxID=168934 RepID=A0A367XFC7_9PROT)

HSP 1 Score: 135 bits (339), Expect = 6.610e-33
Identity = 101/284 (35.56%), Postives = 153/284 (53.87%), Query Frame = 1
Query:  526 PTRAPRVYLNGANLHVGQTVQLTPEQTRYLVSVMRLRDGNPVRVFDGVNGEFLAAVATSXXXXXXXXXXXXXXRLERSGEKIGSGRGGRRGRGKRSAGGAEKVIELRLVFAPIRKQRLKMLVEKAVEVGASRLTPVLTARTQKGAVSDASMLDRLGAVTAVEAAEQCERMTVPPVASPVTLASYLQNGDRSLPDIVFVCKERDVDAPPLLEALAEYEQAFSEQRRQDHVNSSDDSRNANAAFLIGPEGGFDPDEIGALAQYPFVRFVSLGRTVLRAETAAVYAL 1377
            P    R++++ A +  G  + L+PEQ+ YL  VMRL+ G PV++F+G +GE+LA ++                R ++    + S     R R ++++ G        L FAPI+KQRL  L+EK+VE+G +RL P++TA +    ++D   LDRL A   +EAAEQ ER+ VP + +PV L  +L N   +    +  C E    +P     + EY    +E   +   +  D++   N   +IGPEGGF PDEI  + +  F   VSLG  +LRAETAA+ AL
Sbjct:    6 PRARQRLFVSDA-ITAGAEMALSPEQSHYLEHVMRLKPGTPVKIFNGADGEWLATISE--------------LRKKKGAVTVES-----RLRDQQNSTGPA------LAFAPIKKQRLDFLIEKSVELGVTRLMPIITAHS----ITDKVRLDRLQAQV-IEAAEQSERLDVPEIDAPVKLYDWLANWPEN--SHLLFCDETGSGSP-----IGEY---LTESLAKPAGSVIDNNNVVNHTLVIGPEGGFAPDEIDRIRKQSFATAVSLGPRILRAETAAIAAL 248          
BLAST of mRNA_E-siliculosus-1a_F_contig1110.751.1 vs. uniprot
Match: A0A4R3J6Z2_9PROT (Ribosomal RNA small subunit methyltransferase E n=1 Tax=Varunaivibrio sulfuroxidans TaxID=1773489 RepID=A0A4R3J6Z2_9PROT)

HSP 1 Score: 133 bits (335), Expect = 2.590e-32
Identity = 106/282 (37.59%), Postives = 145/282 (51.42%), Query Frame = 1
Query:  541 RVYLNGANLHVGQTVQLTPEQTRYLVSVMRLRDGNPVRVFDGVNGEFLAAVATSXXXXXXXXXXXXXXRLERSGEKIGSGRGGRRGRGKRSAGGAEKVIELRLVFAPIRKQRLKMLVEKAVEVGASRLTPVLTARTQKGAVSDASMLDRLGAVTAVEAAEQCERMTVPPVASPVTLASYLQNGDRSLP---DIVFVCKERDVDAPPLLEALAEYEQAFSEQRRQDHVNSSDDSRNANAAFLIGPEGGFDPDEIGALAQYPFVRFVSLGRTVLRAETAAVYAL 1377
            R++++ A L  G  V L  EQ+ YL +VMR     PV +F+G +GE+L  +A                                     R   G  +   +RL+FAP++K RL  LVEK+VE+G SRL+PV+T  T  G V+ A +  +     A EAAEQCER+T+P V +P+ LA  L   +R LP     +F   ER + APP+ +AL    Q  +E + +              AFLIGPEGGF  DE+  L + PFV  VSLG  +LRAETAA+ AL
Sbjct:   14 RLFVDTA-LTAGARVALDHEQSHYLKNVMRAGKNAPVALFNGRDGEWLGELAALGKHHGEVAIL-------------------------RQMHGQRREPNVRLIFAPLKKARLDFLVEKSVELGVSRLSPVITRHTDVGRVNVARLRAQ-----AREAAEQCERLTLPTVDAPIALAQLLDQWER-LPVGAPPLFAAVER-LSAPPIAQAL----QNVAEVQER--------------AFLIGPEGGFSRDEVALLDKAPFVFPVSLGPRILRAETAALVAL 244          
BLAST of mRNA_E-siliculosus-1a_F_contig1110.751.1 vs. uniprot
Match: A0A0B4XQZ3_9PROT (Ribosomal RNA small subunit methyltransferase E n=12 Tax=Thalassospira TaxID=168934 RepID=A0A0B4XQZ3_9PROT)

HSP 1 Score: 131 bits (329), Expect = 1.760e-31
Identity = 96/270 (35.56%), Postives = 145/270 (53.70%), Query Frame = 1
Query:  574 GQTVQLTPEQTRYLVSVMRLRDGNPVRVFDGVNGEFLAAVATSXXXXXXXXXXXXXXRLERSGEKIGSGRGGRRGRGKRSAGGAEKVIELR--LVFAPIRKQRLKMLVEKAVEVGASRLTPVLTARTQKGAVSDASMLDRLGAVTAVEAAEQCERMTVPPVASPVTLASYLQNGDRSLPDIVFVCKERDVDAPPLLEALAEYEQAFSEQRRQDHVNSSDDSRNANAAFLIGPEGGFDPDEIGALAQYPFVRFVSLGRTVLRAETAAVYAL 1377
            G  ++L PEQ+ YL  VMRL+ G P+++F+G++GE+LA +                   +   +K G+    R+ R        ++++E    L FAPI+KQRL  L+EK+VE+G   L P++TA      ++D   LDRL A   +EAAEQCER++VP +  PV L  +L +   +   ++F C E    +P          +  S+   +   ++ D+    N A +IGPEGGF  DEI  + + PF   VSLG  +LRAETAA+ AL
Sbjct:   21 GCEIELAPEQSHYLEHVMRLKPGTPIKIFNGLDGEWLATI-------------------DHLRKKKGTVTAERQLR--------DQIVERGPILAFAPIKKQRLDFLIEKSVEMGVGTLQPIVTAH----GITDKVRLDRLQAQV-IEAAEQCERLSVPEIVPPVKLLDWLADWPENR-HLLF-CDETGSGSP--------IGEVLSQLLAKGASSAIDNDNVVNHAIVIGPEGGFSADEIERIRKQPFATPVSLGPRILRAETAAIAAL 248          
BLAST of mRNA_E-siliculosus-1a_F_contig1110.751.1 vs. uniprot
Match: UPI00112381F6 (16S rRNA (uracil(1498)-N(3))-methyltransferase n=1 Tax=Sphingomonas japonica TaxID=511662 RepID=UPI00112381F6)

HSP 1 Score: 129 bits (324), Expect = 5.660e-31
Identity = 104/287 (36.24%), Postives = 142/287 (49.48%), Query Frame = 1
Query:  523 PPTRAPRVYLNGANLHVGQTVQLTPEQTRYLVSVMRLRDGNPVRVFDGVNGEFLAAVATSXXXXXXXXXXXXXXRLERSGEKIGSGRGGRRGRGKRSAGGAEKVIELRLVFAPIRKQRLKMLVEKAVEVGASRLTPVLTARTQKGAVSDASMLDRLGAVTAVEAAEQCERMTVPPVASPVTLASYLQNG--DRSLPDIVFVCKERDVDAPPLLEALAEYEQAFSEQRRQDHVNSSDDSRNANAAFLIGPEGGFDPDEIGALAQYPFVRFVSLGRTVLRAETAAVYAL 1377
            PP   PR++L+   L +G  ++L   Q  YL++VMR+RDG+P+++FD   GE+LA V                  +E +G                     E V +L LV APIRK R+  LVEKA E+G  R+ PVLT RT    V D   LDRL A   +EAAEQC R  +P +A P  L + L++   DR+L    F   E      P L+A+                     +R   AA LIGPEGGFDP+E  A+  +P    ++LG  +LRA+TAA  A+
Sbjct:    8 PPESTPRLFLD-QRLELGAHIRLDGPQAHYLIAVMRIRDGDPIKLFDDATGEWLALVRN---------IRKRDLEVEITGHLC----------------PREAVPDLWLVAAPIRKGRIDWLVEKACELGVDRVVPVLTRRT----VVDRLNLDRLRAHL-IEAAEQCGRTALPSLAEPAKLPALLRDWPTDRAL----FFADE--TGGAPALDAMR--------------------ARPGPAAILIGPEGGFDPEERAAIRAHPQAVGITLGPRILRADTAAAAAV 237          
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1110.751.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K9Y9_9PHAE2.780e-23880.7616S rRNA (uracil(1498)-N(3))-methyltransferase n=1... [more]
D7G8G1_ECTSI6.980e-13677.3316S rRNA (uracil(1498)-N(3))-methyltransferase n=1... [more]
A0A835ZHN8_9STRA1.630e-3440.7416S rRNA (uracil(1498)-N(3))-methyltransferase n=1... [more]
K2LDN9_9PROT2.450e-3438.15Ribosomal RNA small subunit methyltransferase E n=... [more]
A0A199YJ05_9PROT4.750e-3438.15Ribosomal RNA small subunit methyltransferase E n=... [more]
UPI00143106BB1.280e-3336.5716S rRNA (uracil(1498)-N(3))-methyltransferase n=2... [more]
A0A367XFC7_9PROT6.610e-3335.56Ribosomal RNA small subunit methyltransferase E n=... [more]
A0A4R3J6Z2_9PROT2.590e-3237.59Ribosomal RNA small subunit methyltransferase E n=... [more]
A0A0B4XQZ3_9PROT1.760e-3135.56Ribosomal RNA small subunit methyltransferase E n=... [more]
UPI00112381F65.660e-3136.2416S rRNA (uracil(1498)-N(3))-methyltransferase n=1... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1110contigE-siliculosus-1a_F_contig1110:30785..33202 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start0
Stop0
Cds size1377
Model size1379
Exons4
Hectar predicted targeting categoryother localisation
Best eggNOG OGNA|NA|NA
Best tax levelEukaryota
COG Functional cat.J
EggNOG OGs2SA8N@2759,COG1385@1
EggNOG free text desc.RNA methyltransferase
Seed eggNOG ortholog2880.D7G8G1
Seed ortholog evalue3.1e-110
Seed ortholog score405.6
Taxonomic scopeEukaryota
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1110.751.1prot_E-siliculosus-1a_F_contig1110.751.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig1110 30785..33202 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927617.0646527-CDS-E-siliculosus-1a_F_contig1110:30784..310771622927617.0646527-CDS-E-siliculosus-1a_F_contig1110:30784..31077Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1110 30785..31077 -
1696318611.8098235-CDS-E-siliculosus-1a_F_contig1110:30784..310771696318611.8098235-CDS-E-siliculosus-1a_F_contig1110:30784..31077Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1110 30785..31077 -
1622927617.079993-CDS-E-siliculosus-1a_F_contig1110:31140..313781622927617.079993-CDS-E-siliculosus-1a_F_contig1110:31140..31378Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1110 31141..31378 -
1696318611.81958-CDS-E-siliculosus-1a_F_contig1110:31140..313781696318611.81958-CDS-E-siliculosus-1a_F_contig1110:31140..31378Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1110 31141..31378 -
1622927617.0930843-CDS-E-siliculosus-1a_F_contig1110:31462..320171622927617.0930843-CDS-E-siliculosus-1a_F_contig1110:31462..32017Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1110 31463..32017 -
1696318611.8291242-CDS-E-siliculosus-1a_F_contig1110:31462..320171696318611.8291242-CDS-E-siliculosus-1a_F_contig1110:31462..32017Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1110 31463..32017 -
1622927617.1057997-CDS-E-siliculosus-1a_F_contig1110:32911..332021622927617.1057997-CDS-E-siliculosus-1a_F_contig1110:32911..33202Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1110 32912..33202 -
1696318611.8384714-CDS-E-siliculosus-1a_F_contig1110:32911..332021696318611.8384714-CDS-E-siliculosus-1a_F_contig1110:32911..33202Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1110 32912..33202 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig1110.751.1

>prot_E-siliculosus-1a_F_contig1110.751.1 ID=prot_E-siliculosus-1a_F_contig1110.751.1|Name=mRNA_E-siliculosus-1a_F_contig1110.751.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=459bp
TSKRATHRHLARRSPPPPLSRFPLRKQQGLQETSWMVCRPFLLALLLAPR
VREDDAACIAPPGWQTKVRPLLASVATRGHSTCSSRDTRIRVRRGVQTLR
SAAGENRAADSANTAGEPSSSSSSSSPSPQAGVSTRRRTEDVGVREIEDG
RPLPPLGVPARIAGVDSALVPLPSPPTRAPRVYLNGANLHVGQTVQLTPE
QTRYLVSVMRLRDGNPVRVFDGVNGEFLAAVATSSSSSSSSSSSSSSSRL
ERSGEKIGSGRGGRRGRGKRSAGGAEKVIELRLVFAPIRKQRLKMLVEKA
VEVGASRLTPVLTARTQKGAVSDASMLDRLGAVTAVEAAEQCERMTVPPV
ASPVTLASYLQNGDRSLPDIVFVCKERDVDAPPLLEALAEYEQAFSEQRR
QDHVNSSDDSRNANAAFLIGPEGGFDPDEIGALAQYPFVRFVSLGRTVLR
AETAAVYAL
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mRNA from alignment at E-siliculosus-1a_F_contig1110:30785..33202-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig1110.751.1 ID=mRNA_E-siliculosus-1a_F_contig1110.751.1|Name=mRNA_E-siliculosus-1a_F_contig1110.751.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=2418bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1110:30785..33202- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ACAAGCAAGCGCGCCACCCATCGCCACCTAGCTAGACGCAGTCCTCCTCC TCCTCTCTCTCGATTCCCCCTTCGGAAGCAGCAGGGCCTGCAAGAAACCT CGTGGATGGTTTGCCGGCCCTTCCTCCTTGCGCTGCTGTTGGCTCCGCGA GTACGAGAGGACGATGCCGCTTGTATCGCGCCGCCGGGGTGGCAGACCAA GGTTCGACCGCTATTAGCATCAGTGGCAACGCGAGGGCACAGCACCTGCA GTAGCAGGGATACGAGGATCAGGGTCCGACGTGGTGTGCAGGTGATGGGT CTGATCGTTTGTTTTCTCTATAACCTCCGATCCCTCCCACCTGCGCCGAT CATGTCCGTCACAACAGCCAGCGAGGTCACGAGGTTATTTATTCATTTGT TCGGCGAGACGGATACTTGACACTCAGTGAGTGTATCATCACCCCGCCGA CACATATCTAAGGCCGAGCGACGATACTGTTGCCGCTTCCAAGCTTCCAA GTATTGAGTAATCATTCCTTCGTTCTGTTCGCTGGGCTGAAACTTAACTG CCAGGACCTTTTCCAAACCAAACATGCGTTATCGTTCGTGAGGATCGGGC ATCGTCGCACGCAAACAGACGGCTTGGGACTGCAGACAAAATTGCGAGTC TTCCGAACTACAACCGCCTAGTGACCTGCCTGCGGTAATCAAAGGCACAA TTCATGTCATGCAGTTGAAGTCTGAGCATCAAATTTGTATTGGTGGACTC TAGGAAGGAAACGCGTGTAACGAAAAAAAGTTGAGATGTGAAATCGTGTT GCCTCCATCCACCCCCATTGTCACTATTGGGTGCACCCCCTGCAGCTGCA GTCTGGTGATGTCTTTTGTACGGTATTCTGGTGGGTGGTACACACCTACG TAAGCGTGCATCGTTTACTTCTGACTTATAGGGCTCAAAGCAACCCGACC CAAATCCCTCCACTCTCCAACATTACTGCTTTCATAAGACCGGTGCGGCA ATAGGTATGGTCATGGCGTTTTGGCAAAAAAACTGTTGGGTCAATCATGC CATGAACCGTCACAATGTGGCATACACGTGATTGTTTGCCCTCTCTTGAA GGTTATTGTCAACATGTTTTCATGTGCGATACCGCTCTTCCCTCTTTGAA TCTCCGACCGCCCCACTTCTCCGCTGTATGAAAAGACACTGAGAAGCGCA GCAGGGGAGAACCGTGCGGCAGATTCAGCGAATACGGCAGGAGAACCGTC ATCATCGTCGTCATCATCATCTCCATCACCACAGGCGGGCGTGTCAACGA GAAGGCGAACAGAGGACGTTGGGGTGCGAGAAATAGAAGATGGACGCCCT TTGCCGCCTCTCGGTGTCCCAGCTAGAATAGCCGGTGTCGACTCCGCTCT GGTCCCATTGCCCTCGCCGCCGACGCGCGCCCCCCGCGTGTATCTCAACG GTGCCAACCTTCACGTGGGACAGACTGTCCAGCTGACACCGGAGCAAACG CGATACCTCGTAAGCGTCATGCGTCTGCGAGATGGTAACCCGGTGCGCGT TTTCGACGGCGTTAACGGCGAGTTCTTGGCGGCGGTCGCTACGAGCAGCA GCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCCGCCTTGAGCGA TCTGGCGAGAAGATCGGCAGCGGACGCGGTGGTAGGAGGGGTAGAGGGAA ACGGTCGGCAGGCGGGGCAGAGAAAGTTATAGAATTGCGGGTTGAGTGCC TCACGCGAAGACAGCCGGGAATTGGCGGCGGCGGTGGCGGCGAGGTGGAG GACGTTGATGCGCCAGAAATAGAGCTCGTTTTCGCGCCCATTCGAAAGCA ACGCCTTAAGATGCTGGTGGAAAAGGCGGTCGAGGTTGGTGCTTCACGGC TGACACCTGTGTTGACCGCTCGCACACAGAAGGGCGCAGTTTCGGATGCG AGCATGCTCGACAGACTCGGGGCGGTCACAGCGGTTGAGGCTGCCGAACA ATGCGAGCGCATGACAGTGCCTCCCGTGGCAAGCCCGGTGACTCTAGCTT CCTATCTCCAAAGTCTTGAGCTTCGTCACAGCAGCTGTGACGGATCAAGT ATCGTTGGATTGGCAAGAGACCGAGACGGCGACAGAAGTTTGCCAGATAT TGTCTTCGTGTGTAAGGAGAGAGACGTGGATGCGCCACCGCTCCTGGAGG CGCTTGCCGAGTACGAGCAGGCCTTTTCGGAGCAACGTAGGCAGGACCAC GTAAACTCTAGCGATGACAGTAGAAACGCAAACGCGGCCTTCCTCATCGG GCCGGAGGGAGGTTTTGATCCCGACGAGATTGGCGCGTTGGCCCAATATC CGTTCGTGCGGTTTGTATCCCTGGGACGGACGGTGCTGCGAGCTGAGACC GCAGCCGTGTACGCCCTG
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1110:30785..33202-

>mRNA_E-siliculosus-1a_F_contig1110.751.1 ID=mRNA_E-siliculosus-1a_F_contig1110.751.1|Name=mRNA_E-siliculosus-1a_F_contig1110.751.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=2754bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1110:30785..33202- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ACAAGCAAGCGCGCCACCCATCGCCACCTAGCTAGACGCAGTCCTCCTCC
TCCTCTCTCTCGATTCCCCCTTCGGAAGCAGCAGGGCCTGCAAGAAACCT
CGTGGATGGTTTGCCGGCCCTTCCTCCTTGCGCTGCTGTTGGCTCCGCGA
GTACGAGAGGACGATGCCGCTTGTATCGCGCCGCCGGGGTGGCAGACCAA
GGTTCGACCGCTATTAGCATCAGTGGCAACGCGAGGGCACAGCACCTGCA
GTAGCAGGGATACGAGGATCAGGGTCCGACGTGGTGTGCAGACAAGCAAG
CGCGCCACCCATCGCCACCTAGCTAGACGCAGTCCTCCTCCTCCTCTCTC
TCGATTCCCCCTTCGGAAGCAGCAGGGCCTGCAAGAAACCTCGTGGATGG
TTTGCCGGCCCTTCCTCCTTGCGCTGCTGTTGGCTCCGCGAGTACGAGAG
GACGATGCCGCTTGTATCGCGCCGCCGGGGTGGCAGACCAAGGTTCGACC
GCTATTAGCATCAGTGGCAACGCGAGGGCACAGCACCTGCAGTAGCAGGG
ATACGAGGATCAGGGTCCGACGTGGTGTGCAGACACTGAGAAGCGCAGCA
GGGGAGAACCGTGCGGCAGATTCAGCGAATACGGCAGGAGAACCGTCATC
ATCGTCGTCATCATCATCTCCATCACCACAGGCGGGCGTGTCAACGAGAA
GGCGAACAGAGGACGTTGGGGTGCGAGAAATAGAAGATGGACGCCCTTTG
CCGCCTCTCGGTGTCCCAGCTAGAATAGCCGGTGTCGACTCCGCTCTGGT
CCCATTGCCCTCGCCGCCGACGCGCGCCCCCCGCGTGTATCTCAACGGTG
CCAACCTTCACGTGGGACAGACTGTCCAGCTGACACCGGAGCAAACGCGA
TACCTCGTAAGCGTCATGCGTCTGCGAGATGGTAACCCGGTGCGCGTTTT
CGACGGCGTTAACGGCGAGTTCTTGGCGGCGGTCGCTACGAGCAGCAGCA
GCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCCGCCTTGAGCGATCT
GGCGAGAAGATCGGCAGCGGACGCGGTGGTAGGAGGGGTAGAGGGAAACG
GTCGGCAGGCGGGGCAGAGAAAGTTATAGAATTGCGGACACTGAGAAGCG
CAGCAGGGGAGAACCGTGCGGCAGATTCAGCGAATACGGCAGGAGAACCG
TCATCATCGTCGTCATCATCATCTCCATCACCACAGGCGGGCGTGTCAAC
GAGAAGGCGAACAGAGGACGTTGGGGTGCGAGAAATAGAAGATGGACGCC
CTTTGCCGCCTCTCGGTGTCCCAGCTAGAATAGCCGGTGTCGACTCCGCT
CTGGTCCCATTGCCCTCGCCGCCGACGCGCGCCCCCCGCGTGTATCTCAA
CGGTGCCAACCTTCACGTGGGACAGACTGTCCAGCTGACACCGGAGCAAA
CGCGATACCTCGTAAGCGTCATGCGTCTGCGAGATGGTAACCCGGTGCGC
GTTTTCGACGGCGTTAACGGCGAGTTCTTGGCGGCGGTCGCTACGAGCAG
CAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCCGCCTTGAGC
GATCTGGCGAGAAGATCGGCAGCGGACGCGGTGGTAGGAGGGGTAGAGGG
AAACGGTCGGCAGGCGGGGCAGAGAAAGTTATAGAATTGCGGCTCGTTTT
CGCGCCCATTCGAAAGCAACGCCTTAAGATGCTGGTGGAAAAGGCGGTCG
AGGTTGGTGCTTCACGGCTGACACCTGTGTTGACCGCTCGCACACAGAAG
GGCGCAGTTTCGGATGCGAGCATGCTCGACAGACTCGGGGCGGTCACAGC
GGTTGAGGCTGCCGAACAATGCGAGCGCATGACAGTGCCTCCCGTGGCAA
GCCCGGTGACTCTAGCTTCCTATCTCCAAACTCGTTTTCGCGCCCATTCG
AAAGCAACGCCTTAAGATGCTGGTGGAAAAGGCGGTCGAGGTTGGTGCTT
CACGGCTGACACCTGTGTTGACCGCTCGCACACAGAAGGGCGCAGTTTCG
GATGCGAGCATGCTCGACAGACTCGGGGCGGTCACAGCGGTTGAGGCTGC
CGAACAATGCGAGCGCATGACAGTGCCTCCCGTGGCAAGCCCGGTGACTC
TAGCTTCCTATCTCCAAAACGGCGACAGAAGTTTGCCAGATATTGTCTTC
GTGTGTAAGGAGAGAGACGTGGATGCGCCACCGCTCCTGGAGGCGCTTGC
CGAGTACGAGCAGGCCTTTTCGGAGCAACGTAGGCAGGACCACGTAAACT
CTAGCGATGACAGTAGAAACGCAAACGCGGCCTTCCTCATCGGGCCGGAG
GGAGGTTTTGATCCCGACGAGATTGGCGCGTTGGCCCAATATCCGTTCGT
GCGGTTTGTATCCCTGGGACGGACGGTGCTGCGAGCTGAGACCGCAGCCG
TGTACGCCCTGACGGCGACAGAAGTTTGCCAGATATTGTCTTCGTGTGTA
AGGAGAGAGACGTGGATGCGCCACCGCTCCTGGAGGCGCTTGCCGAGTAC
GAGCAGGCCTTTTCGGAGCAACGTAGGCAGGACCACGTAAACTCTAGCGA
TGACAGTAGAAACGCAAACGCGGCCTTCCTCATCGGGCCGGAGGGAGGTT
TTGATCCCGACGAGATTGGCGCGTTGGCCCAATATCCGTTCGTGCGGTTT
GTATCCCTGGGACGGACGGTGCTGCGAGCTGAGACCGCAGCCGTGTACGC
CCTG
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