mRNA_E-siliculosus-1a_F_contig1109.738.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig1109.738.1
Unique NamemRNA_E-siliculosus-1a_F_contig1109.738.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1109.738.1 vs. uniprot
Match: D7FUY1_ECTSI (Lipoyl(octanoyl) transferase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUY1_ECTSI)

HSP 1 Score: 698 bits (1801), Expect = 8.080e-251
Identity = 351/373 (94.10%), Postives = 358/373 (95.98%), Query Frame = 2
Query:   56 MWHRACHSLWPQRNRLSPQALPPPPRATSISSISHQERRRHPVGTRGCSRRCLVGTSTPXXXXXXX------RKCLVYNITGGAVPYDRAWLWQQRLLHERMAWQREESPSQDSHDVLLMLEHPPVYTLGRGSSLDHLRFDPTDPSSLGGREVRRTERGGEVTWHGPGQVVGYPVLDLNFHKKDLHWYLRQLEEVVIRVLGRYGLVGERETEHTGVWVGGAKVAAIGLNASRWVTSHGFALNVNPNLSAFEAIVPCGIQGRPVTRLCDLVGAETWSPPSPEQIEKAARVDGTGVTASNAADNHAVDMGSVRSLVMQEFEGVFGVTIEVVDVDAAAHSRGDDELEREIFPADCEPQLLSRLQADSLRQLELTRR 1156
            MWHRACHSLWPQRNRL PQALPPPPRATSISSISHQERRRHPVGTR  SRRCLVGTSTPXXXXXXX      RKCLVYNITGG+VPYDRAWLWQQRLLHERMAWQREE PSQDS+DVLLMLEHPPVYTLGRGSSLDHLRFDPTDPSSLGGREVRRTERGGEVTWHGPGQVVGYPVLDLNFHKKDLHWYLRQLEEVVIRVLGRYGL GERETEHTGVWVGGAKVAAIGLNASRWVTSHGFALNVNP+LSAFEAIVPCGIQGRPVTRLCDLVGAETWSPPSPEQIEKAARVDGTGVTASNA DNHAVDMGSVRSLVMQEFE VFGV ++VVDVDAAAHS GDD+LE+EIFPADCEPQLLSRLQADSLRQLELTRR
Sbjct:    1 MWHRACHSLWPQRNRLPPQALPPPPRATSISSISHQERRRHPVGTRVGSRRCLVGTSTPXXXXXXXXXXXXXRKCLVYNITGGSVPYDRAWLWQQRLLHERMAWQREEYPSQDSYDVLLMLEHPPVYTLGRGSSLDHLRFDPTDPSSLGGREVRRTERGGEVTWHGPGQVVGYPVLDLNFHKKDLHWYLRQLEEVVIRVLGRYGLEGERETEHTGVWVGGAKVAAIGLNASRWVTSHGFALNVNPDLSAFEAIVPCGIQGRPVTRLCDLVGAETWSPPSPEQIEKAARVDGTGVTASNAVDNHAVDMGSVRSLVMQEFEDVFGVRVQVVDVDAAAHSSGDDDLEKEIFPADCEPQLLSRLQADSLRQLELTRR 373          
BLAST of mRNA_E-siliculosus-1a_F_contig1109.738.1 vs. uniprot
Match: A0A6H5JUQ5_9PHAE (Lipoyl(octanoyl) transferase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUQ5_9PHAE)

HSP 1 Score: 517 bits (1332), Expect = 4.130e-181
Identity = 255/272 (93.75%), Postives = 260/272 (95.59%), Query Frame = 2
Query:  341 MAWQREESPSQDSHDVLLMLEHPPVYTLGRGSSLDHLRFDPTDPSSLGGREVRRTERGGEVTWHGPGQVVGYPVLDLNFHKKDLHWYLRQLEEVVIRVLGRYGLVGERETEHTGVWVGGAKVAAIGLNASRWVTSHGFALNVNPNLSAFEAIVPCGIQGRPVTRLCDLVGAETWSPPSPEQIEKAARVDGTGVTASNAADNHAVDMGSVRSLVMQEFEGVFGVTIEVVDVDAAAHSRGDDELEREIFPADCEPQLLSRLQADSLRQLELTRR 1156
            MAWQREESPSQDSHDVLLMLEHPPVYTLGRGSSLDHLRFDPTDPSSL GREVRRTERGGEVTWHGPGQVVGYPVLDLNFH KDLHWY+RQLEEVVIRVLGRYGL GERETEHTGVWVGGAKVAAIGLNASRWVTSHGFALNVNP+LSAFEAIVPCGIQGRPVTRLCDLVG ETW PPS EQIE AARVDGT VTASNAADNHAVDMGSVRSLVMQEFEGVFG+ IEVVDVDAAA   GDD+LEREIFPADCEPQLL+RLQADSLRQLELTRR
Sbjct:    1 MAWQREESPSQDSHDVLLMLEHPPVYTLGRGSSLDHLRFDPTDPSSLDGREVRRTERGGEVTWHGPGQVVGYPVLDLNFHNKDLHWYMRQLEEVVIRVLGRYGLEGERETEHTGVWVGGAKVAAIGLNASRWVTSHGFALNVNPDLSAFEAIVPCGIQGRPVTRLCDLVGTETWFPPSAEQIENAARVDGTDVTASNAADNHAVDMGSVRSLVMQEFEGVFGLRIEVVDVDAAADGSGDDDLEREIFPADCEPQLLARLQADSLRQLELTRR 272          
BLAST of mRNA_E-siliculosus-1a_F_contig1109.738.1 vs. uniprot
Match: A0A835YUM8_9STRA (Lipoyl(octanoyl) transferase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YUM8_9STRA)

HSP 1 Score: 260 bits (664), Expect = 6.720e-81
Identity = 124/198 (62.63%), Postives = 148/198 (74.75%), Query Frame = 2
Query:  254 RKCLVYNITGGAVPYDRAWLWQQRLLHERMAWQREESPSQDSH--DVLLMLEHPPVYTLGRGSSLDHLRFDPTDPSSLGGREVRRTERGGEVTWHGPGQVVGYPVLDLNFHKKDLHWYLRQLEEVVIRVLGRYGLVGERETEHTGVWVGGAKVAAIGLNASRWVTSHGFALNVNPNLSAFEAIVPCGIQGRPVTRLCD 841
            R+C VY++    VPY  AW WQQ LL +RMAWQR+       +  D L++LEHP VYTLGRGS+ ++L+FDP  P      E+ R ERGGEVTWHGPGQ+VGYP+LDLNFH KDLHWYLR LEE+++RVL R G+ GER+  +TGVWVG  K AAIGLNASRWVTSHGFALNV P+LSAF+ IVPCGI  + V  L D
Sbjct:   10 RRCRVYSVEDRQVPYAEAWAWQQSLLRQRMAWQRQRGGDSPHYGCDALILLEHPSVYTLGRGSTTENLKFDPAAPGCP--HELYRIERGGEVTWHGPGQIVGYPILDLNFHTKDLHWYLRSLEEMIMRVLARRGVQGERDPGNTGVWVGNRKYAAIGLNASRWVTSHGFALNVCPDLSAFDNIVPCGISDKSVGCLAD 205          
BLAST of mRNA_E-siliculosus-1a_F_contig1109.738.1 vs. uniprot
Match: A0A251WGY3_9CYAN (Octanoyltransferase n=2 Tax=unclassified Alkalinema TaxID=2635015 RepID=A0A251WGY3_9CYAN)

HSP 1 Score: 228 bits (582), Expect = 1.490e-68
Identity = 118/217 (54.38%), Postives = 145/217 (66.82%), Query Frame = 2
Query:  254 RKCLVYNITGGAVPYDRAWLWQQRLLHERMAWQREESPSQDSHDVLLMLEHPPVYTLGRGSSLDHLRFDPTDPSSLGGREVRRTERGGEVTWHGPGQVVGYPVLDLNFHKKDLHWYLRQLEEVVIRVLGRYGLVGERETEHTGVWVGGAKVAAIGLNASRWVTSHGFALNVNPNLSAFEAIVPCGIQGRPVTRLCDLVGAETWSPPSPEQIEKAARV 904
            R C +Y    G VPY  AW WQQ+ + +R A   +     D  D L++LEHPPVYTLG+GS    L+FDP         E+ R ERGGEVT+H PGQ+VGYP+L+L  ++KDLHWYLRQLEEV+I+VLG YGL G+R  E TGVWV GAKVAAIG+  SRW+T HGFALNV P+LS F  IVPCGI  +PV R+ D +   T     P  ++K A V
Sbjct:   12 RSCRLYQ--PGLVPYAEAWAWQQQQVRDRKA---QIDAGLDPADSLMLLEHPPVYTLGQGSDAGFLKFDPQTAEY----ELHRIERGGEVTYHCPGQLVGYPILNLQHYRKDLHWYLRQLEEVIIQVLGEYGLQGDRVPELTGVWVEGAKVAAIGIKVSRWITMHGFALNVCPDLSGFSQIVPCGIADKPVGRMTDWLPDLTVEQVLPIVVQKFAEV 219          
BLAST of mRNA_E-siliculosus-1a_F_contig1109.738.1 vs. uniprot
Match: B4VX66_9CYAN (Octanoyltransferase n=1 Tax=Coleofasciculus chthonoplastes PCC 7420 TaxID=118168 RepID=B4VX66_9CYAN)

HSP 1 Score: 228 bits (580), Expect = 2.430e-68
Identity = 119/217 (54.84%), Postives = 151/217 (69.59%), Query Frame = 2
Query:  254 RKCLVYNITGGAVPYDRAWLWQQRLLHERMAWQREESPSQDSHDVLLMLEHPPVYTLGRGSSLDHLRFDPTDPSSLGGREVRRTERGGEVTWHGPGQVVGYPVLDLNFHKKDLHWYLRQLEEVVIRVLGRYGLVGERETEHTGVWVGGAKVAAIGLNASRWVTSHGFALNVNPNLSAFEAIVPCGIQGRPVTRLCDLVGAETWSPPSPEQIEKAARV 904
            R+CL+YN   G +PY  AW  Q+ LL +R+       P+ D  DVLL++EHPPVYTLG+G+SLD L+F+PT+       EV R ERGGEVT+H PGQ+VGYP+L+L ++++DLHWYLRQLE V+I VL  YGL G+RET  TGVW+ G KVAAIG+  SRW+T HGFALNV+P+LS F+ IVPCGI  +PV  L   +   T     P  I K A V
Sbjct:    4 RQCLLYN--QGLIPYTVAWEQQRSLLSQRI-----NDPTLD--DVLLLMEHPPVYTLGQGASLDFLKFNPTEADL----EVHRIERGGEVTYHCPGQLVGYPILNLRYYQQDLHWYLRQLEAVLIEVLAVYGLKGDRETGMTGVWLEGRKVAAIGIKVSRWITMHGFALNVDPDLSGFKRIVPCGIADKPVGSLAQFIPNITVDQVRPIVIAKFAEV 207          
BLAST of mRNA_E-siliculosus-1a_F_contig1109.738.1 vs. uniprot
Match: A0A352X5S4_9CYAN (Octanoyltransferase n=1 Tax=Cyanobacteria bacterium UBA11367 TaxID=2055774 RepID=A0A352X5S4_9CYAN)

HSP 1 Score: 227 bits (579), Expect = 2.630e-68
Identity = 120/217 (55.30%), Postives = 152/217 (70.05%), Query Frame = 2
Query:  254 RKCLVYNITGGAVPYDRAWLWQQRLLHERMAWQREESPSQDSHDVLLMLEHPPVYTLGRGSSLDHLRFDPTDPSSLGGREVRRTERGGEVTWHGPGQVVGYPVLDLNFHKKDLHWYLRQLEEVVIRVLGRYGLVGERETEHTGVWVGGAKVAAIGLNASRWVTSHGFALNVNPNLSAFEAIVPCGIQGRPVTRLCDLVGAETWSPPSPEQIEKAARV 904
            R+CLV N+  G VPY  AW  Q+ LL +R+A      PS +  DVLL+LEHPPVY+LG+G+SL+ L+FDP + +     EV R ERGGEVT+H PGQ+VGYP+L+L ++++DLHWYLRQLEEV+IRVLG YGL G+R    TGVW+ G KVAAIG+  SRW+T HGFALNV P+LS F  I+PCGI  +PV  L D +   T +   P    K A V
Sbjct:    3 RRCLVNNL--GIVPYTLAWEKQRSLLAQRVA-----DPSLE--DVLLLLEHPPVYSLGQGASLEFLKFDPAEVNW----EVHRVERGGEVTYHCPGQLVGYPILNLRYYQQDLHWYLRQLEEVLIRVLGIYGLKGDRIEGMTGVWLAGCKVAAIGIKVSRWLTMHGFALNVCPDLSGFNRIIPCGIMDKPVGSLADFIPGITVAEVLPLVASKFAEV 206          
BLAST of mRNA_E-siliculosus-1a_F_contig1109.738.1 vs. uniprot
Match: A0A8J7KHT2_9CYAN (Octanoyltransferase n=3 Tax=Pseudanabaenales TaxID=2881377 RepID=A0A8J7KHT2_9CYAN)

HSP 1 Score: 227 bits (578), Expect = 4.820e-68
Identity = 117/198 (59.09%), Postives = 139/198 (70.20%), Query Frame = 2
Query:  254 RKCLVYNITGGAVPYDRAWLWQQRLLHERMAWQREESPSQDSHDVLLMLEHPPVYTLGRGSSLDHLRFDPTDPSSLGGREVRRTERGGEVTWHGPGQVVGYPVLDLNFHKKDLHWYLRQLEEVVIRVLGRYGLVGERETEHTGVWVGGAKVAAIGLNASRWVTSHGFALNVNPNLSAFEAIVPCGIQGRPVTRLCDLV 847
            R+CL Y+   G VPY+ AW WQQ  + ER         + D  DVLL+LEHPPVYTLG+G+SLD L+FD      L    + RTERGGEVT+H PGQ+VGYP+L+L  +++DLHWYLRQLEEV+IRVL  YGL GER    TGVWV G KVAAIG+  SRW+T HGFALNV P+LS FE IVPCGI  +PV  L   V
Sbjct:    4 RRCLFYHY--GLVPYETAWNWQQSFVAERRQ-------TADLDDVLLLLEHPPVYTLGQGASLDFLKFDLDKTLHL----LYRTERGGEVTYHCPGQLVGYPILNLRHYRQDLHWYLRQLEEVLIRVLALYGLTGERIPGLTGVWVKGCKVAAIGIKVSRWITMHGFALNVCPDLSGFEQIVPCGIADKPVGSLAQFV 188          
BLAST of mRNA_E-siliculosus-1a_F_contig1109.738.1 vs. uniprot
Match: K9PEL4_9CYAN (Octanoyltransferase n=1 Tax=Calothrix sp. PCC 7507 TaxID=99598 RepID=K9PEL4_9CYAN)

HSP 1 Score: 225 bits (574), Expect = 2.090e-67
Identity = 127/250 (50.80%), Postives = 156/250 (62.40%), Query Frame = 2
Query:  260 CLVYNITGGAVPYDRAWLWQQRLLHERMAWQREESPSQDSHDVLLMLEHPPVYTLGRGSSLDHLRFDPTDPSSLGGREVRRTERGGEVTWHGPGQVVGYPVLDLNFHKKDLHWYLRQLEEVVIRVLGRYGLVGERETEHTGVWVGGAKVAAIGLNASRWVTSHGFALNVNPNLSAFEAIVPCGIQGRPVTRLCDLVGAETWSPPSPEQIEKAARVDGTGVTASNAADNHAVDMGSVRSLVMQEFEGVFGV 1009
            CL+YN   G +PY  AW WQ+ LL +R+      +PS D  DVL++LEHPPVYTLG+G+S + L+F+P +       EV R ERGGEVT+H PGQ+VGYP+L+L  +++DLHWYLRQLEEV+IRVL  YGL GER    TGVWV G KVAAIG+  SRW+T HGFALNV P +S F+ IVPCGI  +PV  L +      W P               G+T              VRS V Q F GVFGV
Sbjct:   12 CLLYN--QGLIPYLEAWEWQRSLLGDRI-----RNPSLD--DVLILLEHPPVYTLGQGASPEFLKFNPDEIPY----EVHRVERGGEVTYHCPGQLVGYPILNLQRYRQDLHWYLRQLEEVLIRVLAVYGLQGERIAAFTGVWVEGRKVAAIGIKVSRWITMHGFALNVCPEMSGFQQIVPCGITDKPVGSLAE------WIP---------------GITCEE-----------VRSHVAQSFAGVFGV 216          
BLAST of mRNA_E-siliculosus-1a_F_contig1109.738.1 vs. uniprot
Match: UPI001684ED1E (Lipoyl(Octanoyl) transferase LipB n=2 Tax=Oscillatoria sp. FACHB-1407 TaxID=2692847 RepID=UPI001684ED1E)

HSP 1 Score: 225 bits (573), Expect = 2.760e-67
Identity = 117/197 (59.39%), Postives = 139/197 (70.56%), Query Frame = 2
Query:  269 YNITGGAVPYDRAWLWQQRLLHERMAWQREESPSQDSHDVLLMLEHPPVYTLGRGSSLDHLRFDPTDPSSLGGREVRRTERGGEVTWHGPGQVVGYPVLDLNFHKKDLHWYLRQLEEVVIRVLGRYGLVGERETEHTGVWVGGAKVAAIGLNASRWVTSHGFALNVNPNLSAFEAIVPCGIQGRPVTRLCD-LVGAE 856
            Y +T G VPYDRAW WQ+ L+  R A  R+        DVL +LEHPPVYTLG+GS    L+FDPT        +V RTERGGEVT+H PGQ+VGY +L+LN +++DLHWYLRQLEEV+IRVL +YGL GER +  TGVWV G KVAAIG+  SRW+T HGFALNV P+LS F  IVPCGI  +PV  L   L G E
Sbjct:    7 YLVTPGLVPYDRAWQWQRSLVESRRADPRQT-------DVLFLLEHPPVYTLGQGSDPGFLKFDPTHTEW----QVVRTERGGEVTYHCPGQLVGYAILNLNHYQRDLHWYLRQLEEVLIRVLSQYGLQGERISGLTGVWVEGRKVAAIGIKVSRWITMHGFALNVCPDLSGFSHIVPCGIADKPVGSLAQWLPGVE 192          
BLAST of mRNA_E-siliculosus-1a_F_contig1109.738.1 vs. uniprot
Match: A0A1Z4I5R9_9NOSO (Octanoyltransferase n=3 Tax=unclassified Nostoc TaxID=2593658 RepID=A0A1Z4I5R9_9NOSO)

HSP 1 Score: 224 bits (570), Expect = 7.700e-67
Identity = 113/196 (57.65%), Postives = 141/196 (71.94%), Query Frame = 2
Query:  260 CLVYNITGGAVPYDRAWLWQQRLLHERMAWQREESPSQDSHDVLLMLEHPPVYTLGRGSSLDHLRFDPTDPSSLGGREVRRTERGGEVTWHGPGQVVGYPVLDLNFHKKDLHWYLRQLEEVVIRVLGRYGLVGERETEHTGVWVGGAKVAAIGLNASRWVTSHGFALNVNPNLSAFEAIVPCGIQGRPVTRLCDLV 847
            C+VYN   G +PY  A  WQ+ LL +R+     ++P+ D  DVL++LEHPPVYTLG+GSSLD L+FDP         E+ R ERGGEVT+H PGQ+VGYP+L+L+ H KDLHWYLRQLEEV+IRVL  YGL G+R    TGVW+ G K+AAIG+  SRWVT HGFALNV P+++ FE IVPCGI  +PV  L   +
Sbjct:   12 CVVYN--KGLMPYTEAHAWQRSLLRDRI-----DNPNLD--DVLILLEHPPVYTLGQGSSLDFLKFDPNQSEF----EIHRIERGGEVTYHCPGQLVGYPILNLHRHCKDLHWYLRQLEEVIIRVLAVYGLKGDRTPPLTGVWLEGRKIAAIGIKVSRWVTMHGFALNVCPDMTGFEQIVPCGIADKPVGSLAQWI 194          
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1109.738.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FUY1_ECTSI8.080e-25194.10Lipoyl(octanoyl) transferase n=1 Tax=Ectocarpus si... [more]
A0A6H5JUQ5_9PHAE4.130e-18193.75Lipoyl(octanoyl) transferase n=1 Tax=Ectocarpus sp... [more]
A0A835YUM8_9STRA6.720e-8162.63Lipoyl(octanoyl) transferase n=1 Tax=Tribonema min... [more]
A0A251WGY3_9CYAN1.490e-6854.38Octanoyltransferase n=2 Tax=unclassified Alkalinem... [more]
B4VX66_9CYAN2.430e-6854.84Octanoyltransferase n=1 Tax=Coleofasciculus chthon... [more]
A0A352X5S4_9CYAN2.630e-6855.30Octanoyltransferase n=1 Tax=Cyanobacteria bacteriu... [more]
A0A8J7KHT2_9CYAN4.820e-6859.09Octanoyltransferase n=3 Tax=Pseudanabaenales TaxID... [more]
K9PEL4_9CYAN2.090e-6750.80Octanoyltransferase n=1 Tax=Calothrix sp. PCC 7507... [more]
UPI001684ED1E2.760e-6759.39Lipoyl(Octanoyl) transferase LipB n=2 Tax=Oscillat... [more]
A0A1Z4I5R9_9NOSO7.700e-6757.65Octanoyltransferase n=3 Tax=unclassified Nostoc Ta... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1109contigE-siliculosus-1a_F_contig1109:16051..17977 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size1104
Model size1526
Exons2
Ec32 orthologEc-01_008620.1
Ec32 ortholog descriptionLipoyl-[acyl-carrier-protein]-protein-N-lipoyltransferase (Lipoate-protein ligase B)
Hectar predicted targeting categorymitochondrion
BRITEko00000,ko00001,ko01000
Best eggNOG OGNA|NA|NA
Best tax levelEukaryota
COG Functional cat.H
EC2.3.1.181
Ec32 orthologEc-01_008620.2
EggNOG OGsCOG0321@1,KOG0325@2759
EggNOG free text desc.octanoyl transferase activity (acting on glycine-cleavage complex H protein)
KEGG Pathwayko00785,ko01100,map00785,map01100
KEGG ReactionR07766,R07769
KEGG koko:K03801
KEGG rclassRC00039,RC00992,RC02867
Seed eggNOG ortholog2880.D7FUY1
Seed ortholog evalue5.7e-200
Seed ortholog score703.4
Taxonomic scopeEukaryota
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1109.738.1prot_E-siliculosus-1a_F_contig1109.738.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig1109 16418..17922 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927614.7334256-UTR-E-siliculosus-1a_F_contig1109:16050..164171622927614.7334256-UTR-E-siliculosus-1a_F_contig1109:16050..16417Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1109 16051..16417 -
1696318610.3855414-UTR-E-siliculosus-1a_F_contig1109:16050..164171696318610.3855414-UTR-E-siliculosus-1a_F_contig1109:16050..16417Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1109 16051..16417 -
1622927614.7749798-UTR-E-siliculosus-1a_F_contig1109:17922..179771622927614.7749798-UTR-E-siliculosus-1a_F_contig1109:17922..17977Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1109 17923..17977 -
1696318610.4167511-UTR-E-siliculosus-1a_F_contig1109:17922..179771696318610.4167511-UTR-E-siliculosus-1a_F_contig1109:17922..17977Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1109 17923..17977 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927614.748348-CDS-E-siliculosus-1a_F_contig1109:16417..169571622927614.748348-CDS-E-siliculosus-1a_F_contig1109:16417..16957Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1109 16418..16957 -
1696318610.397746-CDS-E-siliculosus-1a_F_contig1109:16417..169571696318610.397746-CDS-E-siliculosus-1a_F_contig1109:16417..16957Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1109 16418..16957 -
1622927614.761681-CDS-E-siliculosus-1a_F_contig1109:17358..179221622927614.761681-CDS-E-siliculosus-1a_F_contig1109:17358..17922Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1109 17359..17922 -
1696318610.407371-CDS-E-siliculosus-1a_F_contig1109:17358..179221696318610.407371-CDS-E-siliculosus-1a_F_contig1109:17358..17922Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1109 17359..17922 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig1109.738.1

>prot_E-siliculosus-1a_F_contig1109.738.1 ID=prot_E-siliculosus-1a_F_contig1109.738.1|Name=mRNA_E-siliculosus-1a_F_contig1109.738.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=368bp
MWHRACHSLWPQRNRLSPQALPPPPRATSISSISHQERRRHPVGTRGCSR
RCLVGTSTPPPPPPPPRKCLVYNITGGAVPYDRAWLWQQRLLHERMAWQR
EESPSQDSHDVLLMLEHPPVYTLGRGSSLDHLRFDPTDPSSLGGREVRRT
ERGGEVTWHGPGQVVGYPVLDLNFHKKDLHWYLRQLEEVVIRVLGRYGLV
GERETEHTGVWVGGAKVAAIGLNASRWVTSHGFALNVNPNLSAFEAIVPC
GIQGRPVTRLCDLVGAETWSPPSPEQIEKAARVDGTGVTASNAADNHAVD
MGSVRSLVMQEFEGVFGVTIEVVDVDAAAHSRGDDELEREIFPADCEPQL
LSRLQADSLRQLELTRR*
back to top

mRNA from alignment at E-siliculosus-1a_F_contig1109:16051..17977-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig1109.738.1 ID=mRNA_E-siliculosus-1a_F_contig1109.738.1|Name=mRNA_E-siliculosus-1a_F_contig1109.738.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=1927bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1109:16051..17977- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
CAGCCGCGTGCAGCGGGTCCAGGGTCGCAGTTACCGCTTCTTGTGTGCTT TCCTCATGTGGCATAGGGCGTGTCACAGCTTGTGGCCGCAGAGAAATCGA CTGTCACCTCAGGCACTGCCACCGCCGCCACGAGCAACTTCAATCTCGTC AATATCCCACCAAGAGAGGCGGCGGCACCCGGTTGGCACTCGAGGTTGCA GCAGGAGGTGCCTTGTAGGGACATCAACACCACCACCACCACCACCACCA CCTCGCAAGTGCCTCGTGTACAACATCACAGGTGGTGCCGTCCCTTACGA CCGGGCATGGCTGTGGCAGCAGCGCCTGCTGCACGAGCGCATGGCCTGGC AGCGAGAGGAATCTCCAAGCCAGGACTCGCACGACGTCCTTCTCATGCTC GAACACCCTCCCGTCTACACGCTCGGGCGGGGCTCGTCCCTGGACCACCT GCGCTTCGACCCGACGGACCCTTCGTCTCTGGGCGGGAGAGAAGTTCGCC GGACGGAGAGGGGAGGCGAGGTGACCTGGCACGGTCCGGGGCAGGTGGTG GGGTATCCTGTGCTGGACCTCAACTTTCACAAGAAGGACTTGCACTGGTA CCTGAGGCAACTGGAAGAGGTGATGACTCCCGCGCAAGAGCTTGCTGGGA GCATGCTGGCTCTTTCGTGCACCATCGTATGTATGGGCTGTTGCAACTTG TTCTGATACGAACCCCGGCGTTACGTAGTATTTTGTGTGGCATATCTATT CTGGTGCACCCCTCTACTTCGGCCGGGTTGACCCTCTTAGCGGCAGGAGA AGACTTGTAGTGCGACGAGGTTGACCGTAAAGACATGCAGCAGCCACGCC CGTATCGACGCAAGTACACCTGCGTTGTCACACGTACACCAAGAGTGCCT CCCAACTCCCTACCCTTCCTGTTGCACATCCATTGCATTAGCACGCTTCC TCAATGTCCGAGCACACCTCTTTCGGCCCTCATCGTTTCTGGACCTTCTG CCGCCGTTCAATACACAAAGGTTGTCATCCGAGTGCTCGGGAGATATGGC CTCGTGGGCGAGCGAGAGACGGAACATACGGGCGTGTGGGTGGGCGGCGC CAAGGTCGCGGCCATCGGGCTGAACGCCAGCCGCTGGGTCACCTCGCACG GCTTTGCGCTCAACGTCAACCCGAACCTGAGCGCCTTCGAGGCTATCGTG CCGTGCGGCATCCAGGGCCGGCCAGTCACGAGGCTCTGCGACCTCGTTGG CGCCGAGACCTGGTCTCCGCCCTCGCCGGAACAAATCGAAAAGGCGGCAC GCGTCGATGGAACAGGTGTCACTGCTTCGAACGCGGCGGATAATCATGCG GTCGACATGGGCTCCGTTCGGTCGCTCGTGATGCAGGAGTTCGAGGGCGT GTTCGGCGTGACGATAGAAGTCGTGGACGTTGACGCTGCAGCACATAGTA GGGGTGACGACGAGTTGGAACGAGAGATCTTCCCGGCAGACTGCGAGCCG CAGCTGCTGTCGCGCCTACAAGCCGATAGCTTGCGACAATTAGAACTGAC GAGGCGATGACGACGCTGAATGACTCCAGATAGTTGATAACATGTTAGCA TTTATGGCGCCATCTCACGTGCCTCATCCGCCGTGCTGCTACGAACTTTC GGAAGGGCTTTGGCGTCGAGCTTTGCGCGCAACGCCGGGGATCCATCCGT GAAGATCGTGTAGGCAGATGCAGAACAAGCTTTGCATACTTTGGTCTCCA AGGACCAGCGCAAGGCCATCTAGCTCTTCAAGGAAAATCGGATAAGACAA TCAGAGTCAAGAGACCCGAAAACGAGCTCCACGCTTGTGATCACGAACCA GGATGTAGGTGTGAGACACAACTGACAGCAGTGTCGACTTCAGCATCAGC TGGTAACTCAACCAAAAATCAAAACCG
back to top

Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1109:16051..17977-

>mRNA_E-siliculosus-1a_F_contig1109.738.1 ID=mRNA_E-siliculosus-1a_F_contig1109.738.1|Name=mRNA_E-siliculosus-1a_F_contig1109.738.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=2208bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1109:16051..17977- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGTGGCATAGGGCGTGTCACAGCTTGTGGCCGCAGAGAAATCGACTGTC
ACCTCAGGCACTGCCACCGCCGCCACGAGCAACTTCAATCTCGTCAATAT
CCCACCAAGAGAGGCGGCGGCACCCGGTTGGCACTCGAGGTTGCAGCAGG
AGGTGCCTTGTAGGGACATCAACACCACCACCACCACCACCACCACCTCG
CAAGTGCCTCGTGTACAACATCACAGGTGGTGCCGTCCCTTACGACCGGG
CATGGCTGTGGCAGCAGCGCCTGCTGCACGAGCGCATGGCCTGGCAGCGA
GAGGAATCTCCAAGCCAGGACTCGCACGACGTCCTTCTCATGCTCGAACA
CCCTCCCGTCTACACGCTCGGGCGGGGCTCGTCCCTGGACCACCTGCGCT
TCGACCCGACGGACCCTTCGTCTCTGGGCGGGAGAGAAGTTCGCCGGACG
GAGAGGGGAGGCGAGGTGACCTGGCACGGTCCGGGGCAGGTGGTGGGGTA
TCCTGTGCTGGACCTCAACTTTCACAAGAAGGACTTGCACTGGTACCTGA
GGCAACTGGAAGAGATGTGGCATAGGGCGTGTCACAGCTTGTGGCCGCAG
AGAAATCGACTGTCACCTCAGGCACTGCCACCGCCGCCACGAGCAACTTC
AATCTCGTCAATATCCCACCAAGAGAGGCGGCGGCACCCGGTTGGCACTC
GAGGTTGCAGCAGGAGGTGCCTTGTAGGGACATCAACACCACCACCACCA
CCACCACCACCTCGCAAGTGCCTCGTGTACAACATCACAGGTGGTGCCGT
CCCTTACGACCGGGCATGGCTGTGGCAGCAGCGCCTGCTGCACGAGCGCA
TGGCCTGGCAGCGAGAGGAATCTCCAAGCCAGGACTCGCACGACGTCCTT
CTCATGCTCGAACACCCTCCCGTCTACACGCTCGGGCGGGGCTCGTCCCT
GGACCACCTGCGCTTCGACCCGACGGACCCTTCGTCTCTGGGCGGGAGAG
AAGTTCGCCGGACGGAGAGGGGAGGCGAGGTGACCTGGCACGGTCCGGGG
CAGGTGGTGGGGTATCCTGTGCTGGACCTCAACTTTCACAAGAAGGACTT
GCACTGGTACCTGAGGCAACTGGAAGAGGTTGTCATCCGAGTGCTCGGGA
GATATGGCCTCGTGGGCGAGCGAGAGACGGAACATACGGGCGTGTGGGTG
GGCGGCGCCAAGGTCGCGGCCATCGGGCTGAACGCCAGCCGCTGGGTCAC
CTCGCACGGCTTTGCGCTCAACGTCAACCCGAACCTGAGCGCCTTCGAGG
CTATCGTGCCGTGCGGCATCCAGGGCCGGCCAGTCACGAGGCTCTGCGAC
CTCGTTGGCGCCGAGACCTGGTCTCCGCCCTCGCCGGAACAAATCGAAAA
GGCGGCACGCGTCGATGGAACAGGTGTCACTGCTTCGAACGCGGCGGATA
ATCATGCGGTCGACATGGGCTCCGTTCGGTCGCTCGTGATGCAGGAGTTC
GAGGGCGTGTTCGGCGTGACGATAGAAGTCGTGGACGTTGACGCTGCAGC
ACATAGTAGGGGTGACGACGAGTTGGAACGAGAGATCTTCCCGGCAGACT
GCGAGCCGCAGCTGCTGTCGCGCCTACAAGCCGATAGCTTGCGACAATTA
GAACTGACGAGGCGATGAGTTGTCATCCGAGTGCTCGGGAGATATGGCCT
CGTGGGCGAGCGAGAGACGGAACATACGGGCGTGTGGGTGGGCGGCGCCA
AGGTCGCGGCCATCGGGCTGAACGCCAGCCGCTGGGTCACCTCGCACGGC
TTTGCGCTCAACGTCAACCCGAACCTGAGCGCCTTCGAGGCTATCGTGCC
GTGCGGCATCCAGGGCCGGCCAGTCACGAGGCTCTGCGACCTCGTTGGCG
CCGAGACCTGGTCTCCGCCCTCGCCGGAACAAATCGAAAAGGCGGCACGC
GTCGATGGAACAGGTGTCACTGCTTCGAACGCGGCGGATAATCATGCGGT
CGACATGGGCTCCGTTCGGTCGCTCGTGATGCAGGAGTTCGAGGGCGTGT
TCGGCGTGACGATAGAAGTCGTGGACGTTGACGCTGCAGCACATAGTAGG
GGTGACGACGAGTTGGAACGAGAGATCTTCCCGGCAGACTGCGAGCCGCA
GCTGCTGTCGCGCCTACAAGCCGATAGCTTGCGACAATTAGAACTGACGA
GGCGATGA
back to top