mRNA_E-siliculosus-1a_F_contig1109.737.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig1109.737.1
Unique NamemRNA_E-siliculosus-1a_F_contig1109.737.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig1109.737.1 vs. uniprot
Match: A0A6H5JZN7_9PHAE (Protein kinase domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JZN7_9PHAE)

HSP 1 Score: 234 bits (598), Expect = 9.510e-72
Identity = 107/110 (97.27%), Postives = 109/110 (99.09%), Query Frame = 1 
Query:    4 HQAPEVLMHDPQGSAVDWWGLGVLVYELLLGRTPFAGENGKTRLTFLNIMHGEARFPEPGERDEGDISGVCQEFVRALLVKDPRGRAGGASPVRDHAFFSGVRWDRLLEE 333
            + APEVLMH+PQGSAVDWWGLGVLVYELLLGRTPFAGENGKTRLTFLNIMHGEARFPEPGERDEGDISGVCQEFVRALLVKDPRGRAGGASPVRDHAFFSGVRWDRLLEE
Sbjct:  464 YMAPEVLMHEPQGSAVDWWGLGVLVYELLLGRTPFAGENGKTRLTFLNIMHGEARFPEPGERDEGDISGVCQEFVRALLVKDPRGRAGGASPVRDHAFFSGVRWDRLLEE 573
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BLAST of mRNA_E-siliculosus-1a_F_contig1109.737.1 vs. uniprot
Match: A0A2T7D9A5_9POAL (Protein kinase domain-containing protein n=5 Tax=Panicum TaxID=4539 RepID=A0A2T7D9A5_9POAL)

HSP 1 Score: 109 bits (272), Expect = 7.070e-26
Identity = 55/118 (46.61%), Postives = 71/118 (60.17%), Query Frame = 1 
Query:   10 APEVLMHDPQGSAVDWWGLGVLVYELLLGRTPFAGENGKTRLTFLNIMHGEARFPEPGERDEGDISGVCQEFVRALLVKDPR---GRAGGASPVRDHAFFSGVRWDRLLE-EEPPLRP 351
            APE++  +  G AVDWW +GVLVYE+  GRTPF G+N K   TF N++H E  FP    R   +++    + V  LL +DPR   G AGGA  +R+H FF+GV WD L E   PP  P
Sbjct:  270 APEMVRGEGHGFAVDWWAVGVLVYEMAYGRTPFKGQNRKE--TFRNVLHKELEFPGDSRRRTPELA----DLVSRLLERDPRRRLGYAGGADEIREHPFFAGVAWDMLTEVSRPPYIP 381
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BLAST of mRNA_E-siliculosus-1a_F_contig1109.737.1 vs. uniprot
Match: A0A4V5N825_9PEZI (Serine/threonine-protein kinase nrc-2 n=3 Tax=Friedmanniomyces TaxID=329881 RepID=A0A4V5N825_9PEZI)

HSP 1 Score: 108 bits (270), Expect = 4.030e-25
Identity = 52/117 (44.44%), Postives = 67/117 (57.26%), Query Frame = 1 
Query:   10 APEVLMHDPQGSAVDWWGLGVLVYELLLGRTPFAGENGKTRLTFLNIMHGEARFPEPGERDEGDISGVCQEFVRALLVKDPRGRAG---GASPVRDHAFFSGVRWDRLLEEEPPLRP 351
            APEV+      SAVDWW LG+L+YE+L G TPF G+N     TF NI+  E  FP+ G      +S +C+  +R LL+KD   R G   GAS V+ HAFF    W  L   +PP+ P
Sbjct:  547 APEVIKGCGHTSAVDWWTLGILIYEMLFGTTPFKGKNRNA--TFANILRDEVPFPDGGGASGASVSNLCKSLIRKLLIKDELRRLGSRAGASDVKAHAFFRSTSWALLRHMKPPIIP 661
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BLAST of mRNA_E-siliculosus-1a_F_contig1109.737.1 vs. uniprot
Match: A0A1G4IMC4_9SACH (LANO_0A00738g1_1 n=1 Tax=Lachancea nothofagi CBS 11611 TaxID=1266666 RepID=A0A1G4IMC4_9SACH)

HSP 1 Score: 108 bits (269), Expect = 5.560e-25
Identity = 52/117 (44.44%), Postives = 70/117 (59.83%), Query Frame = 1 
Query:   10 APEVLMHDPQGSAVDWWGLGVLVYELLLGRTPFAGENGKTRLTFLNIMHGEARFPEPGERDEGDISGVCQEFVRALLVKDPRGRAG---GASPVRDHAFFSGVRWDRLLEEEPPLRP 351
            APEV+  +   +AVDWW LG+L+YE+L G TPF G+N  T  TF N++  E  FP   E     +S  C++ +R LL+K    R G   GAS ++ HAFF  V+W  L  +EPPL P
Sbjct:  640 APEVIRGNGHTAAVDWWTLGILIYEMLFGFTPFKGDN--TNKTFSNVLKNEVSFPNNNE-----VSRSCKDLIRKLLIKSEGKRLGSKFGASDIKKHAFFKKVQWSLLRNQEPPLLP 749
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BLAST of mRNA_E-siliculosus-1a_F_contig1109.737.1 vs. uniprot
Match: B6K7L8_SCHJY (AGC/RSK protein kinase Ppk14 n=1 Tax=Schizosaccharomyces japonicus (strain yFS275 / FY16936) TaxID=402676 RepID=B6K7L8_SCHJY)

HSP 1 Score: 107 bits (267), Expect = 8.890e-25
Identity = 54/117 (46.15%), Postives = 71/117 (60.68%), Query Frame = 1 
Query:   10 APEVLMHDPQGSAVDWWGLGVLVYELLLGRTPFAGENGKTRLTFLNIMHGEARFPEPGERDEGDISGVCQEFVRALLVKDPRGRAG---GASPVRDHAFFSGVRWDRLLEEEPPLRP 351
            APEV+      SAVDWW LG+L+YE++   TPF G+N    +TF NI+H +  FPE    D  +IS VC+  +R LLVKD   R G   GAS V+ H+FF  V+W  L   +PP+ P
Sbjct:  407 APEVIKGCGHTSAVDWWTLGILLYEMIFATTPFKGKN--RNMTFSNILHKDVVFPEYS--DAPNISNVCKSLIRKLLVKDENDRLGSKAGASDVKMHSFFKDVQWALLRHIQPPIIP 519
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BLAST of mRNA_E-siliculosus-1a_F_contig1109.737.1 vs. uniprot
Match: W2S8Y8_9EURO (Serine/threonine-protein kinase nrc-2 n=1 Tax=Cyphellophora europaea CBS 101466 TaxID=1220924 RepID=W2S8Y8_9EURO)

HSP 1 Score: 107 bits (267), Expect = 9.530e-25
Identity = 52/117 (44.44%), Postives = 70/117 (59.83%), Query Frame = 1 
Query:   10 APEVLMHDPQGSAVDWWGLGVLVYELLLGRTPFAGENGKTRLTFLNIMHGEARFPEPGERDEGDISGVCQEFVRALLVKDPRGRAG---GASPVRDHAFFSGVRWDRLLEEEPPLRP 351
            APEV+  +   SAVDWW LG+L+YE+L G TPF G+N     TF NI+  E  FPE    ++  +S +C+  +R LL+KD   R G   GAS V+ HAFF  + W  L   +PP+ P
Sbjct:  442 APEVIKGNGHTSAVDWWTLGILIYEMLFGTTPFKGKNRNA--TFANILRDEVPFPEHSGSNQ--VSNLCKSVIRKLLIKDEMKRLGSRAGASDVKSHAFFKPITWALLRHMKPPMIP 554
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BLAST of mRNA_E-siliculosus-1a_F_contig1109.737.1 vs. uniprot
Match: A0A167X1D0_9EURO (Serine/threonine-protein kinase nrc-2 n=1 Tax=Ascosphaera apis ARSEF 7405 TaxID=392613 RepID=A0A167X1D0_9EURO)

HSP 1 Score: 107 bits (267), Expect = 9.970e-25
Identity = 52/117 (44.44%), Postives = 72/117 (61.54%), Query Frame = 1 
Query:   10 APEVLMHDPQGSAVDWWGLGVLVYELLLGRTPFAGENGKTRLTFLNIMHGEARFPEPGERDEGDISGVCQEFVRALLVKDPRGRAG---GASPVRDHAFFSGVRWDRLLEEEPPLRP 351
            APEV+  +   SAVDWW LG+L+YE+L G TPF G+N K  +TF NI+  E +FPE     +  IS  C+  +R LL+KD + R G   GAS V+ H FF+  +W  +   +PP+ P
Sbjct:  504 APEVIQGNGHTSAVDWWTLGILIYEMLYGTTPFKGKNRK--ITFGNILKDEVQFPEHAGSPQ--ISNTCKSLIRKLLIKDEKKRLGARAGASDVKTHPFFAKTQWALIRHMKPPMIP 616
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BLAST of mRNA_E-siliculosus-1a_F_contig1109.737.1 vs. uniprot
Match: A0A3M7MQQ9_9EURO (Protein kinase domain-containing protein (Fragment) n=1 Tax=Chaetothyriales sp. CBS 132003 TaxID=2249419 RepID=A0A3M7MQQ9_9EURO)

HSP 1 Score: 107 bits (266), Expect = 1.450e-24
Identity = 51/117 (43.59%), Postives = 70/117 (59.83%), Query Frame = 1 
Query:   10 APEVLMHDPQGSAVDWWGLGVLVYELLLGRTPFAGENGKTRLTFLNIMHGEARFPEPGERDEGDISGVCQEFVRALLVKDPRGRAG---GASPVRDHAFFSGVRWDRLLEEEPPLRP 351
            APEV+  +   SAVDWW LG+L+YE+L G TPF G+N     TF NI+  E  FP+P       ++ +C+  +R LL+KD   R G   GAS V++HAFF  + W  L   +PP+ P
Sbjct: 1165 APEVIKGNGHTSAVDWWTLGILIYEMLFGTTPFKGKNRNA--TFANILRDEVPFPDPSTSTP--VTNLCKSLIRKLLIKDEVKRLGSRAGASDVKNHAFFKPITWALLRHMKPPMIP 1277
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BLAST of mRNA_E-siliculosus-1a_F_contig1109.737.1 vs. uniprot
Match: S9W203_SCHCR (AGC/RSK protein kinase Ppk14 n=1 Tax=Schizosaccharomyces cryophilus (strain OY26 / ATCC MYA-4695 / CBS 11777 / NBRC 106824 / NRRL Y48691) TaxID=653667 RepID=S9W203_SCHCR)

HSP 1 Score: 106 bits (265), Expect = 1.660e-24
Identity = 55/117 (47.01%), Postives = 68/117 (58.12%), Query Frame = 1 
Query:   10 APEVLMHDPQGSAVDWWGLGVLVYELLLGRTPFAGENGKTRLTFLNIMHGEARFPEPGERDEGDISGVCQEFVRALLVKDPRGRAG---GASPVRDHAFFSGVRWDRLLEEEPPLRP 351
            APEV+      SAVDWW LG+L YE+L   TPF G+N    +TF NI+H E  FPE    D   IS +C+  +R LL+KD   R G   GAS V+ H FF  V+W  L   EPP+ P
Sbjct:  407 APEVIKGCGHTSAVDWWTLGILFYEMLYATTPFKGKN--RNMTFSNILHREVVFPEYA--DAPSISSLCKSLIRKLLLKDENDRLGSQAGASDVKLHPFFKNVQWALLRHTEPPIIP 519
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BLAST of mRNA_E-siliculosus-1a_F_contig1109.737.1 vs. uniprot
Match: A0A444CQI8_ENSVE (Protein kinase domain-containing protein n=1 Tax=Ensete ventricosum TaxID=4639 RepID=A0A444CQI8_ENSVE)

HSP 1 Score: 103 bits (257), Expect = 1.770e-24
Identity = 52/119 (43.70%), Postives = 64/119 (53.78%), Query Frame = 1 
Query:    4 HQAPEVLMHDPQGSAVDWWGLGVLVYELLLGRTPFAGENGKTRLTFLNIMHGEARFPEPGERDEGDISGVCQEFVRALLVKDPRGRAG---GASPVRDHAFFSGVRWDRLLEEEPPLRP 351
            + APEV    P GSAVDWW  GVL+YELL GRTPFAGE  K   T  NI+     FP P            ++ +  LL KDP  R G   GA+ V++HAFF G+ +  +    PP  P
Sbjct:  122 YMAPEVAGGGPHGSAVDWWAYGVLLYELLYGRTPFAGETHKA--TLRNIVTEPLVFPPPSSPSSRSSDSAARDLIAHLLDKDPEARLGSRRGAADVKEHAFFRGLNFALMRSHRPPTDP 238
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1109.737.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JZN7_9PHAE9.510e-7297.27Protein kinase domain-containing protein n=2 Tax=E... [more]
A0A2T7D9A5_9POAL7.070e-2646.61Protein kinase domain-containing protein n=5 Tax=P... [more]
A0A4V5N825_9PEZI4.030e-2544.44Serine/threonine-protein kinase nrc-2 n=3 Tax=Frie... [more]
A0A1G4IMC4_9SACH5.560e-2544.44LANO_0A00738g1_1 n=1 Tax=Lachancea nothofagi CBS 1... [more]
B6K7L8_SCHJY8.890e-2546.15AGC/RSK protein kinase Ppk14 n=1 Tax=Schizosacchar... [more]
W2S8Y8_9EURO9.530e-2544.44Serine/threonine-protein kinase nrc-2 n=1 Tax=Cyph... [more]
A0A167X1D0_9EURO9.970e-2544.44Serine/threonine-protein kinase nrc-2 n=1 Tax=Asco... [more]
A0A3M7MQQ9_9EURO1.450e-2443.59Protein kinase domain-containing protein (Fragment... [more]
S9W203_SCHCR1.660e-2447.01AGC/RSK protein kinase Ppk14 n=1 Tax=Schizosacchar... [more]
A0A444CQI8_ENSVE1.770e-2443.70Protein kinase domain-containing protein n=1 Tax=E... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1109contigE-siliculosus-1a_F_contig1109:13705..14055 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop0
Cds size327
Model size351
Exons1
Hectar predicted targeting categoryother localisation
BRITEko00000,ko00001,ko00002,ko01000,ko01001,ko03019,ko03036
Best eggNOG OGNA|NA|NA
Best tax levelEukaryota
COG Functional cat.T
EC2.7.11.1,2.7.11.11
EggNOG OGsKOG0605@1,KOG0605@2759
EggNOG free text desc.protein serine/threonine kinase activity
KEGG ModuleM00695
KEGG Pathwayko01522,ko04010,ko04014,ko04020,ko04024,ko04062,ko04113,ko04114,ko04138,ko04140,ko04211,ko04213,ko04261,ko04270,ko04310,ko04340,ko04341,ko04371,ko04530,ko04540,ko04611,ko04713,ko04714,ko04720,ko04723,ko04724,ko04725,ko04726,ko04727,ko04728,ko04740,ko04742,ko04750,ko04910,ko04911,ko04912,ko04913,ko04914,ko04915,ko04916,ko04918,ko04919,ko04921,ko04922,ko04923,ko04924,ko04925,ko04926,ko04927,ko04934,ko04961,ko04962,ko04970,ko04971,ko04976,ko05012,ko05020,ko05030,ko05031,ko05032,ko05110,ko05146,ko05165,ko05166,ko05169,ko05200,ko05203,ko05205,ko05414,map01522,map04010,map04014,map04020,map04024,map04062,map04113,map04114,map04138,map04140,map04211,map04213,map04261,map04270,map04310,map04340,map04341,map04371,map04530,map04540,map04611,map04713,map04714,map04720,map04723,map04724,map04725,map04726,map04727,map04728,map04740,map04742,map04750,map04910,map04911,map04912,map04913,map04914,map04915,map04916,map04918,map04919,map04921,map04922,map04923,map04924,map04925,map04926,map04927,map04934,map04961,map04962,map04970,map04971,map04976,map05012,map05020,map05030,map05031,map05032,map05110,map05146,map05165,map05166,map05169,map05200,map05203,map05205,map05414
KEGG koko:K04345,ko:K17529,ko:K21764
Seed eggNOG ortholog2880.D7FUY0
Seed ortholog evalue1.1e-55
Seed ortholog score222.2
Taxonomic scopeEukaryota
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927614.6528738-UTR-E-siliculosus-1a_F_contig1109:13704..137281622927614.6528738-UTR-E-siliculosus-1a_F_contig1109:13704..13728Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1109 13705..13728 +
1696318610.3653085-UTR-E-siliculosus-1a_F_contig1109:13704..137281696318610.3653085-UTR-E-siliculosus-1a_F_contig1109:13704..13728Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1109 13705..13728 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927614.6803758-CDS-E-siliculosus-1a_F_contig1109:13728..140551622927614.6803758-CDS-E-siliculosus-1a_F_contig1109:13728..14055Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1109 13729..14055 +
1696318610.375801-CDS-E-siliculosus-1a_F_contig1109:13728..140551696318610.375801-CDS-E-siliculosus-1a_F_contig1109:13728..14055Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1109 13729..14055 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1109.737.1prot_E-siliculosus-1a_F_contig1109.737.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig1109 13729..14055 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig1109.737.1

>prot_E-siliculosus-1a_F_contig1109.737.1 ID=prot_E-siliculosus-1a_F_contig1109.737.1|Name=mRNA_E-siliculosus-1a_F_contig1109.737.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=109bp
MHDPQGSAVDWWGLGVLVYELLLGRTPFAGENGKTRLTFLNIMHGEARFP
EPGERDEGDISGVCQEFVRALLVKDPRGRAGGASPVRDHAFFSGVRWDRL
LEEEPPLRP
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mRNA from alignment at E-siliculosus-1a_F_contig1109:13705..14055+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig1109.737.1 ID=mRNA_E-siliculosus-1a_F_contig1109.737.1|Name=mRNA_E-siliculosus-1a_F_contig1109.737.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=351bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1109:13705..14055+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
TTCCATCAGGCGCCGGAGGTCCTGATGCACGACCCCCAGGGGAGCGCCGT
GGACTGGTGGGGTCTGGGCGTCCTGGTCTACGAGCTGCTGCTGGGCCGCA
CCCCGTTCGCCGGAGAGAACGGCAAGACCCGCCTCACGTTCCTCAACATC
ATGCACGGGGAGGCCCGTTTCCCGGAGCCCGGGGAGCGCGACGAGGGGGA
CATCAGCGGCGTCTGCCAGGAGTTCGTGCGGGCGCTGCTGGTCAAGGACC
CCCGGGGACGCGCCGGCGGCGCGTCCCCGGTGCGGGACCACGCCTTCTTC
TCCGGGGTGCGGTGGGACCGCCTTCTCGAAGAGGAACCCCCGCTGCGGCC
T
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1109:13705..14055+

>mRNA_E-siliculosus-1a_F_contig1109.737.1 ID=mRNA_E-siliculosus-1a_F_contig1109.737.1|Name=mRNA_E-siliculosus-1a_F_contig1109.737.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=654bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1109:13705..14055+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGCACGACCCCCAGGGGAGCGCCGTGGACTGGTGGGGTCTGGGCGTCCT
GGTCTACGAGCTGCTGCTGGGCCGCACCCCGTTCGCCGGAGAGAACGGCA
AGACCCGCCTCACGTTCCTCAACATCATGCACGGGGAGGCCCGTTTCCCG
GAGCCCGGGGAGCGCGACGAGGGGGACATCAGCGGCGTCTGCCAGGAGTT
CGTGCGGGCGCTGCTGGTCAAGGACCCCCGGGGACGCGCCGGCGGCGCGT
CCCCGGTGCGGGACCACGCCTTCTTCTCCGGGGTGCGGTGGGACCGCCTT
CTCGAAGAGGAACCCCCGCTGCGGCCTATGCACGACCCCCAGGGGAGCGC
CGTGGACTGGTGGGGTCTGGGCGTCCTGGTCTACGAGCTGCTGCTGGGCC
GCACCCCGTTCGCCGGAGAGAACGGCAAGACCCGCCTCACGTTCCTCAAC
ATCATGCACGGGGAGGCCCGTTTCCCGGAGCCCGGGGAGCGCGACGAGGG
GGACATCAGCGGCGTCTGCCAGGAGTTCGTGCGGGCGCTGCTGGTCAAGG
ACCCCCGGGGACGCGCCGGCGGCGCGTCCCCGGTGCGGGACCACGCCTTC
TTCTCCGGGGTGCGGTGGGACCGCCTTCTCGAAGAGGAACCCCCGCTGCG
GCCT
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