prot_E-siliculosus-1a_F_contig1108.733.1 (polypeptide) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_E-siliculosus-1a_F_contig1108.733.1
Unique Nameprot_E-siliculosus-1a_F_contig1108.733.1
Typepolypeptide
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Sequence length96
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1108.733.1 vs. uniprot
Match: D7FYM8_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FYM8_ECTSI)

HSP 1 Score: 125 bits (315), Expect = 9.860e-35
Identity = 62/90 (68.89%), Postives = 72/90 (80.00%), Query Frame = 0
Query:    1 MYAIGGIGFAACAVFDIFAVVRWTTGDDEIFQDSDDDRWYAFEESSDDDSNALWYALPPFLGAITMGLGAIFSFTAVFFWEDGDGTAVPH 90
            MYAIGG+GFA CA+FD+FAV+RW T DD I +  D     +F+ SS+  + ALWYALPP LGAITMGLGAIFSFTAVFFWEDGD TA+PH
Sbjct:   61 MYAIGGVGFAVCALFDLFAVLRWITDDDNIVEGDD-----SFDGSSEG-TTALWYALPPLLGAITMGLGAIFSFTAVFFWEDGDCTAMPH 144          
BLAST of mRNA_E-siliculosus-1a_F_contig1108.733.1 vs. uniprot
Match: A0A6H5JWS2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWS2_9PHAE)

HSP 1 Score: 117 bits (293), Expect = 9.540e-31
Identity = 60/97 (61.86%), Postives = 70/97 (72.16%), Query Frame = 0
Query:    1 MYAIGGIGFAACAVFDIFAVVRWTTGDDEIFQDSDDDRWYAFE------ESSDDDSNALWYALPPFLGAITMGLGAIFSFTAVFFWEDGDGTAVPHV 91
            MY IG +GFA CAVFD+ AV+RW T DDEIF DSDDD    F+      E S D +  LW A+PPFLGAI MGLGAIF+FTA+F W+ G GTA+PHV
Sbjct:   86 MYVIGSLGFALCAVFDVLAVLRWITRDDEIF-DSDDDYNTTFQVDDTQSEESSDSTILLWLAVPPFLGAIAMGLGAIFTFTAIFAWKYGGGTAIPHV 181          
BLAST of mRNA_E-siliculosus-1a_F_contig1108.733.1 vs. uniprot
Match: A0A6H5KAL4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAL4_9PHAE)

HSP 1 Score: 67.0 bits (162), Expect = 1.730e-11
Identity = 39/95 (41.05%), Postives = 52/95 (54.74%), Query Frame = 0
Query:    2 YAIGGIGFAACAVFDIFAVVRWTTGDDEIFQDSDDDRWYAFE---------ESSDDDSNALWYALPPFLGAITMGLGAIFSFTAVFFWEDGDGTA 87
            Y  GGI FA  AVFDI  +V W      I+ +  DD +             E  D  +  LW+AL PFLGA+++GLGA+FSFT++ FW+D    A
Sbjct:   57 YITGGICFAVAAVFDILVLVGWIA----IYNNLQDDYYXXXXXXXXXXXDGEWEDWKNVILWFALLPFLGALSLGLGAVFSFTSLCFWKDAGSPA 147          
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1108.733.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FYM8_ECTSI9.860e-3568.89Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A6H5JWS2_9PHAE9.540e-3161.86Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KAL4_9PHAE1.730e-1141.05Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Ectocarpus siliculosus 1a female
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 81..95
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 60..80
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..59
NoneNo IPR availableTMHMMTMhelixcoord: 2..24
NoneNo IPR availableTMHMMTMhelixcoord: 58..80

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1108contigE-siliculosus-1a_F_contig1108:32087..32909 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Ectocarpus siliculosus 1a female2022-09-29
Diamond blastp: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-16
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1108.733.1mRNA_E-siliculosus-1a_F_contig1108.733.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalemRNAE-siliculosus-1a_F_contig1108 31945..34489 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_E-siliculosus-1a_F_contig1108.733.1 ID=prot_E-siliculosus-1a_F_contig1108.733.1|Name=mRNA_E-siliculosus-1a_F_contig1108.733.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=96bp
MYAIGGIGFAACAVFDIFAVVRWTTGDDEIFQDSDDDRWYAFEESSDDDS
NALWYALPPFLGAITMGLGAIFSFTAVFFWEDGDGTAVPHVSAEE*
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