mRNA_E-siliculosus-1a_F_contig1108.733.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1108.733.1 vs. uniprot
Match: D7FYM8_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FYM8_ECTSI) HSP 1 Score: 219 bits (557), Expect = 2.070e-67 Identity = 111/167 (66.47%), Postives = 125/167 (74.85%), Query Frame = 2 Query: 2 ARLCIVLSIVIHAISLFVEGWFWDWQRNAAFGVFAVGGLVLCIYDQYMYAIGGIGFAACAVFDIFAVVRWTTGDDEIFQDSDDDRWYAFEESSDDDSNALWYALPPFLGAITMGLGAIFSFTAVFFWEDGDGTAVPHVSAEE*FG---IGRSPTSTPRRLHQTASEP 493
ARLCI LSIVIH ISLFVEGW+W WQRNAAFGVFAVGGLVLCIYDQYMYAIGG+GFA CA+FD+FAV+RW T DD I + D +F+ SS+ + ALWYALPP LGAITMGLGAIFSFTAVFFWEDGD TA+PH G I P + PR + + P
Sbjct: 14 ARLCIALSIVIHTISLFVEGWYWPWQRNAAFGVFAVGGLVLCIYDQYMYAIGGVGFAVCALFDLFAVLRWITDDDNIVEGDD-----SFDGSSEG-TTALWYALPPLLGAITMGLGAIFSFTAVFFWEDGDCTAMPHEGKTVELGLAPIAAHPGAPPRAYYPQSPHP 174
BLAST of mRNA_E-siliculosus-1a_F_contig1108.733.1 vs. uniprot
Match: A0A6H5JWS2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWS2_9PHAE) HSP 1 Score: 176 bits (446), Expect = 5.790e-50 Identity = 88/144 (61.11%), Postives = 106/144 (73.61%), Query Frame = 2 Query: 2 ARLCIVLSIVIHAISLFVEGWFWDWQRNAAFGVFAVGGLVLCIYDQYMYAIGGIGFAACAVFDIFAVVRWTTGDDEIFQDSDDDRWYAFE------ESSDDDSNALWYALPPFLGAITMGLGAIFSFTAVFFWEDGDGTAVPHV 415
AR C +LSIVIHAIS ++ G F+ WQRNA F F +GGL+LC Y++YMY IG +GFA CAVFD+ AV+RW T DDEIF DSDDD F+ E S D + LW A+PPFLGAI MGLGAIF+FTA+F W+ G GTA+PHV
Sbjct: 39 ARGCAILSIVIHAISFYLGGGFFVWQRNACFIAFVMGGLLLCFYERYMYVIGSLGFALCAVFDVLAVLRWITRDDEIF-DSDDDYNTTFQVDDTQSEESSDSTILLWLAVPPFLGAIAMGLGAIFTFTAIFAWKYGGGTAIPHV 181
BLAST of mRNA_E-siliculosus-1a_F_contig1108.733.1 vs. uniprot
Match: A0A6H5KAL4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAL4_9PHAE) HSP 1 Score: 109 bits (272), Expect = 1.120e-24 Identity = 57/138 (41.30%), Postives = 81/138 (58.70%), Query Frame = 2 Query: 2 ARLCIVLSIVIHAISLFVEGWFWDWQRNAAFGVFAVGGLVLCIYDQYMYAIGGIGFAACAVFDIFAVVRWTTGDDEIFQDSDDDRWYAFE---------ESSDDDSNALWYALPPFLGAITMGLGAIFSFTAVFFWED 388
AR C + +I++H +L V GW W WQ A+ F + G++LC+YD+ Y GGI FA AVFDI +V W I+ + DD + E D + LW+AL PFLGA+++GLGA+FSFT++ FW+D
Sbjct: 9 ARACAICAIIVHVGALLVFGWLWVWQWIASVLAFIMCGVLLCMYDRCAYITGGICFAVAAVFDILVLVGWIA----IYNNLQDDYYXXXXXXXXXXXDGEWEDWKNVILWFALLPFLGALSLGLGAVFSFTSLCFWKD 142 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1108.733.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 3 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig1108.733.1 >prot_E-siliculosus-1a_F_contig1108.733.1 ID=prot_E-siliculosus-1a_F_contig1108.733.1|Name=mRNA_E-siliculosus-1a_F_contig1108.733.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=96bp MYAIGGIGFAACAVFDIFAVVRWTTGDDEIFQDSDDDRWYAFEESSDDDSback to top mRNA from alignment at E-siliculosus-1a_F_contig1108:31945..34489+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig1108.733.1 ID=mRNA_E-siliculosus-1a_F_contig1108.733.1|Name=mRNA_E-siliculosus-1a_F_contig1108.733.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=2545bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1108:31945..34489+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1108:31945..34489+ >mRNA_E-siliculosus-1a_F_contig1108.733.1 ID=mRNA_E-siliculosus-1a_F_contig1108.733.1|Name=mRNA_E-siliculosus-1a_F_contig1108.733.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=576bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1108:31945..34489+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |