mRNA_E-siliculosus-1a_F_contig1108.733.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig1108.733.1
Unique NamemRNA_E-siliculosus-1a_F_contig1108.733.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig1108.733.1 vs. uniprot
Match: D7FYM8_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FYM8_ECTSI)

HSP 1 Score: 219 bits (557), Expect = 2.070e-67
Identity = 111/167 (66.47%), Postives = 125/167 (74.85%), Query Frame = 2 
Query:    2 ARLCIVLSIVIHAISLFVEGWFWDWQRNAAFGVFAVGGLVLCIYDQYMYAIGGIGFAACAVFDIFAVVRWTTGDDEIFQDSDDDRWYAFEESSDDDSNALWYALPPFLGAITMGLGAIFSFTAVFFWEDGDGTAVPHVSAEE*FG---IGRSPTSTPRRLHQTASEP 493
            ARLCI LSIVIH ISLFVEGW+W WQRNAAFGVFAVGGLVLCIYDQYMYAIGG+GFA CA+FD+FAV+RW T DD I +  D     +F+ SS+  + ALWYALPP LGAITMGLGAIFSFTAVFFWEDGD TA+PH       G   I   P + PR  +  +  P
Sbjct:   14 ARLCIALSIVIHTISLFVEGWYWPWQRNAAFGVFAVGGLVLCIYDQYMYAIGGVGFAVCALFDLFAVLRWITDDDNIVEGDD-----SFDGSSEG-TTALWYALPPLLGAITMGLGAIFSFTAVFFWEDGDCTAMPHEGKTVELGLAPIAAHPGAPPRAYYPQSPHP 174
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BLAST of mRNA_E-siliculosus-1a_F_contig1108.733.1 vs. uniprot
Match: A0A6H5JWS2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWS2_9PHAE)

HSP 1 Score: 176 bits (446), Expect = 5.790e-50
Identity = 88/144 (61.11%), Postives = 106/144 (73.61%), Query Frame = 2 
Query:    2 ARLCIVLSIVIHAISLFVEGWFWDWQRNAAFGVFAVGGLVLCIYDQYMYAIGGIGFAACAVFDIFAVVRWTTGDDEIFQDSDDDRWYAFE------ESSDDDSNALWYALPPFLGAITMGLGAIFSFTAVFFWEDGDGTAVPHV 415
            AR C +LSIVIHAIS ++ G F+ WQRNA F  F +GGL+LC Y++YMY IG +GFA CAVFD+ AV+RW T DDEIF DSDDD    F+      E S D +  LW A+PPFLGAI MGLGAIF+FTA+F W+ G GTA+PHV
Sbjct:   39 ARGCAILSIVIHAISFYLGGGFFVWQRNACFIAFVMGGLLLCFYERYMYVIGSLGFALCAVFDVLAVLRWITRDDEIF-DSDDDYNTTFQVDDTQSEESSDSTILLWLAVPPFLGAIAMGLGAIFTFTAIFAWKYGGGTAIPHV 181
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BLAST of mRNA_E-siliculosus-1a_F_contig1108.733.1 vs. uniprot
Match: A0A6H5KAL4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAL4_9PHAE)

HSP 1 Score: 109 bits (272), Expect = 1.120e-24
Identity = 57/138 (41.30%), Postives = 81/138 (58.70%), Query Frame = 2 
Query:    2 ARLCIVLSIVIHAISLFVEGWFWDWQRNAAFGVFAVGGLVLCIYDQYMYAIGGIGFAACAVFDIFAVVRWTTGDDEIFQDSDDDRWYAFE---------ESSDDDSNALWYALPPFLGAITMGLGAIFSFTAVFFWED 388
            AR C + +I++H  +L V GW W WQ  A+   F + G++LC+YD+  Y  GGI FA  AVFDI  +V W      I+ +  DD +             E  D  +  LW+AL PFLGA+++GLGA+FSFT++ FW+D
Sbjct:    9 ARACAICAIIVHVGALLVFGWLWVWQWIASVLAFIMCGVLLCMYDRCAYITGGICFAVAAVFDILVLVGWIA----IYNNLQDDYYXXXXXXXXXXXDGEWEDWKNVILWFALLPFLGALSLGLGAVFSFTSLCFWKD 142
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1108.733.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FYM8_ECTSI2.070e-6766.47Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A6H5JWS2_9PHAE5.790e-5061.11Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KAL4_9PHAE1.120e-2441.30Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1108contigE-siliculosus-1a_F_contig1108:31945..34489 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size288
Model size1069
Exons3
Ec32 orthologEc-00_008650.1
Ec32 ortholog descriptionHypothetical protein
Hectar predicted targeting categoryother localisation
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1108.733.1prot_E-siliculosus-1a_F_contig1108.733.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig1108 32087..32909 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927614.3212903-UTR-E-siliculosus-1a_F_contig1108:31944..320861622927614.3212903-UTR-E-siliculosus-1a_F_contig1108:31944..32086Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1108 31945..32086 +
1696318610.2127469-UTR-E-siliculosus-1a_F_contig1108:31944..320861696318610.2127469-UTR-E-siliculosus-1a_F_contig1108:31944..32086Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1108 31945..32086 +
1622927614.3574371-UTR-E-siliculosus-1a_F_contig1108:32909..329191622927614.3574371-UTR-E-siliculosus-1a_F_contig1108:32909..32919Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1108 32910..32919 +
1696318610.2550468-UTR-E-siliculosus-1a_F_contig1108:32909..329191696318610.2550468-UTR-E-siliculosus-1a_F_contig1108:32909..32919Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1108 32910..32919 +
1622927614.367819-UTR-E-siliculosus-1a_F_contig1108:33860..344891622927614.367819-UTR-E-siliculosus-1a_F_contig1108:33860..34489Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1108 33861..34489 +
1696318610.263988-UTR-E-siliculosus-1a_F_contig1108:33860..344891696318610.263988-UTR-E-siliculosus-1a_F_contig1108:33860..34489Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1108 33861..34489 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927614.333477-CDS-E-siliculosus-1a_F_contig1108:32086..321541622927614.333477-CDS-E-siliculosus-1a_F_contig1108:32086..32154Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1108 32087..32154 +
1696318610.2337067-CDS-E-siliculosus-1a_F_contig1108:32086..321541696318610.2337067-CDS-E-siliculosus-1a_F_contig1108:32086..32154Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1108 32087..32154 +
1622927614.3463054-CDS-E-siliculosus-1a_F_contig1108:32689..329091622927614.3463054-CDS-E-siliculosus-1a_F_contig1108:32689..32909Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1108 32690..32909 +
1696318610.2459483-CDS-E-siliculosus-1a_F_contig1108:32689..329091696318610.2459483-CDS-E-siliculosus-1a_F_contig1108:32689..32909Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1108 32690..32909 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig1108.733.1

>prot_E-siliculosus-1a_F_contig1108.733.1 ID=prot_E-siliculosus-1a_F_contig1108.733.1|Name=mRNA_E-siliculosus-1a_F_contig1108.733.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=96bp
MYAIGGIGFAACAVFDIFAVVRWTTGDDEIFQDSDDDRWYAFEESSDDDS
NALWYALPPFLGAITMGLGAIFSFTAVFFWEDGDGTAVPHVSAEE*
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mRNA from alignment at E-siliculosus-1a_F_contig1108:31945..34489+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig1108.733.1 ID=mRNA_E-siliculosus-1a_F_contig1108.733.1|Name=mRNA_E-siliculosus-1a_F_contig1108.733.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=2545bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1108:31945..34489+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
GGCACGGCTATGTATTGTGTTGTCGATCGTTATCCATGCAATCAGCCTCT
TCGTGGAAGGTTGGTTTTGGGATTGGCAGCGGAACGCTGCCTTTGGCGTC
TTCGCCGTTGGCGGCCTTGTCCTGTGCATCTACGACCAGTACATGTACGC
CATAGGCGGCATAGGGTTCGCTGCATGTGCGGTGTTCGATATCTTTGCCG
TTGTGCGATGGTGAGCCCCGGGAAAGTAGCGCAGATTCCAAGCGCTGCCG
AATTGAGCTTCGGTGGGATTGATCAGGGTTGCGTTCGTCACAGCTGTTGT
TGAACAAAACTGTGTTTTGGTATCGGCGTTCGGCGTTGTGGGTGGAGTAG
CTGCGTATGAACACCTCAGTCATCCTTTTCGCTCGCGCGCCAGGTACGGC
ACAACGCATGGTGTCAGACTGGCATTGGTGTCTCTCACAGAGGGAAGTTC
TACGACAACAATCAATCTGCAACACTAGAGATGCTTTGCATTGGCGCCAG
TGTGGGACGTTCTGCAGTTGGTAGTCGAGATGATGTGGTTGGCTGAAGAC
TTGAAGTCAATGGTCCCGTGTTTGCTGTCCATGAGACTATCCCTCGGCAG
TTGGAGATTTGCTCCATATATACCAATTCACATATCGCCGGACACAAGAG
GCCAGGCATTGCGACTCACGGTCGGCTGCCTGTCCCTCCATTTTTCGTTA
TATATACCCACCACAACCTTGCACAACCTAACCTTGTATTTTCAGGACCA
CGGGAGACGATGAAATTTTCCAAGACAGTGATGATGACCGGTGGTACGCC
TTCGAAGAATCGAGCGACGACGACAGTAATGCCCTCTGGTACGCCTTGCC
CCCTTTTCTCGGAGCCATCACCATGGGCCTGGGTGCCATTTTTTCCTTCA
CGGCGGTGTTCTTCTGGGAGGACGGTGACGGCACGGCCGTGCCCCACGTG
AGTGCTGAAGAATAGTTCGGCATCGGTTCGCCGGCGCTAAATTTGTTTGA
CCGCAATATCACCAACCCTGCTTCGTCCGAAGCGCCATGCCCAACAGAGA
GTCGGCATATCGACACTCCCTGACAAAGTAGCAACATTCAATTCGTGGAA
GGCGAGCTTTGGATTGTTTCTTGCCATTTTGTCGACGGTCGTTGGCCCCG
CCCCGCATATTGATGCTGTATATCGACACTTGTCCTTCATAGAGAGAATG
CCACGACCTGCTGTACGAACGCTACCCGGAATCCGCCGGAATCCGGTCTC
AGCCCGTCTTGTCTCGCTGGACGTTGTCTCGTGCTTCCGGCGGGAAGTTC
GTTTTAGGTCAAATAGTGCCCTACCCGTTGTGTATGCACCATTTGTTGTC
CAGAGTTTGTCCCCGGCAAAGGATACACTGTTCTCGTCATAGGGGAGGTT
TGTGCGAAATCCAAAGCCGCCAAATACCTTGTCTTCAGATGCATCGTCCC
ACCCAATGTTTCTTTTCTGGTCTTCCTCTCTGTTTTTCTGGGACAAAAGT
CTTGCAACGTGCAAAGGGGGTGGTGTAACTCGTCAATCCCAACTACGTAT
CTCCACGCATTTTGACAGATCTCCGAATTCTCCAGAACCTAGTTGGTATG
TCTTCTGCGAATGTGTACCGATTCTGGTAAAGGTCAATTGACGGATACCT
TGCGAATCGGGTCTTCCTCAACACTGCGCCGAAATCGATGAAATCATGGC
CCCAACGTTTCCTTGTTCATGAGCTATCCAACCGTCTACATCATCATAGA
GCATGCCAAACAATTCCTCTGGTCTCACGGAATGGTTTATTGTTCCTGCG
CAAAACGATCGTTGGCGAGGTGTTCGACAGGTCCTCAAAAAGGCTTCCTG
TCGTTCTTAGGCAAGGTTCGGGGCTTCCTTCCGTATGACCCGCGTGCTGC
ACCTTGTTCTAACCAGGTCGCAGCCCCACCTCAACCCCCCGGCGACTCCA
CCAAACAGCCTCAGAGCCAGCAAGAGAGCAAGACCGCGGAGCTCGGACTG
GCACCGCCCTCTGCGTACCCACGGACTCCACCCCCCGCGTACCACCCACA
GTCGCCACCCCCGGCGTACCGCCCAAAATCGCCACCCCCGGCATACCGAC
GATAACGTGTCGTCGGCAAACCTGGTGGCCAGTACTGACGACGACGACAA
TATCGTGACAGATACCAACCAACCTTGATAGCAAGGTCACAGGCGAAGAG
ACGCCCATGATATCGTCCTGTGCCAACGGGACACTCCTGCCCAGAGTGCT
GTAGACATGTATCGGGGAGGGCATTGGTGGATGTACGTGGATCGCCCGTT
GTGAAATCTTTAGGATGATTAGTTCTTGCCTTCGTGCCTTCGATTCAGTA
GCGTTTCGTCGTGGGTACGTGTATGATGGATTTACTGCAGTTCTCGTGGT
AGTCGCTGTTCGACCAGCCTCTGTACTTGTACATACACTTTTTACACTAC
TGTACTAGCATTCATCATGTAAAGTAAGCACGAAGGAGGAAGGCAAGGCA
TCTTGACAATAGCGGCTCCCGGCGGAAGTGATCCCTCGCTTGCGG
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1108:31945..34489+

>mRNA_E-siliculosus-1a_F_contig1108.733.1 ID=mRNA_E-siliculosus-1a_F_contig1108.733.1|Name=mRNA_E-siliculosus-1a_F_contig1108.733.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=576bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1108:31945..34489+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGTACGCCATAGGCGGCATAGGGTTCGCTGCATGTGCGGTGTTCGATAT
CTTTGCCGTTGTGCGATGATGTACGCCATAGGCGGCATAGGGTTCGCTGC
ATGTGCGGTGTTCGATATCTTTGCCGTTGTGCGATGGACCACGGGAGACG
ATGAAATTTTCCAAGACAGTGATGATGACCGGTGGTACGCCTTCGAAGAA
TCGAGCGACGACGACAGTAATGCCCTCTGGTACGCCTTGCCCCCTTTTCT
CGGAGCCATCACCATGGGCCTGGGTGCCATTTTTTCCTTCACGGCGGTGT
TCTTCTGGGAGGACGGTGACGGCACGGCCGTGCCCCACGTGAGTGCTGAA
GAATAGGACCACGGGAGACGATGAAATTTTCCAAGACAGTGATGATGACC
GGTGGTACGCCTTCGAAGAATCGAGCGACGACGACAGTAATGCCCTCTGG
TACGCCTTGCCCCCTTTTCTCGGAGCCATCACCATGGGCCTGGGTGCCAT
TTTTTCCTTCACGGCGGTGTTCTTCTGGGAGGACGGTGACGGCACGGCCG
TGCCCCACGTGAGTGCTGAAGAATAG
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