mRNA_E-siliculosus-1a_F_contig1105.718.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig1105.718.1
Unique NamemRNA_E-siliculosus-1a_F_contig1105.718.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1105.718.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1105contigE-siliculosus-1a_F_contig1105:15544..19337 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size711
Model size711
Exons3
Ec32 orthologEc-00_008340.1
Ec32 ortholog descriptionHypothetical protein
Hectar predicted targeting categoryother localisation
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1105.718.1prot_E-siliculosus-1a_F_contig1105.718.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig1105 15544..19337 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927611.8259552-CDS-E-siliculosus-1a_F_contig1105:15543..155861622927611.8259552-CDS-E-siliculosus-1a_F_contig1105:15543..15586Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1105 15544..15586 +
1696318609.2427168-CDS-E-siliculosus-1a_F_contig1105:15543..155861696318609.2427168-CDS-E-siliculosus-1a_F_contig1105:15543..15586Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1105 15544..15586 +
1622927611.8430023-CDS-E-siliculosus-1a_F_contig1105:18261..183851622927611.8430023-CDS-E-siliculosus-1a_F_contig1105:18261..18385Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1105 18262..18385 +
1696318609.252969-CDS-E-siliculosus-1a_F_contig1105:18261..183851696318609.252969-CDS-E-siliculosus-1a_F_contig1105:18261..18385Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1105 18262..18385 +
1622927611.8590276-CDS-E-siliculosus-1a_F_contig1105:18793..193371622927611.8590276-CDS-E-siliculosus-1a_F_contig1105:18793..19337Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1105 18794..19337 +
1696318609.261925-CDS-E-siliculosus-1a_F_contig1105:18793..193371696318609.261925-CDS-E-siliculosus-1a_F_contig1105:18793..19337Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1105 18794..19337 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig1105.718.1

>prot_E-siliculosus-1a_F_contig1105.718.1 ID=prot_E-siliculosus-1a_F_contig1105.718.1|Name=mRNA_E-siliculosus-1a_F_contig1105.718.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=237bp
MADVLFDRPTEPASAPRVRAFAEVAFKEIQSVVGSDASLLADKLAFAEYM
DKINESVLLGLHEPPPAASVINGGKHAFEQETQDSSSHQTAKPNYHEAPS
PLLHSFSINTTEADAVASPLEASSWRAVSSLRRHLRPVGTNSALGHSAIL
SPPSSPCSARVHKVRFDVGAEEKDLCTGKKIFPTSAALQNRNQGLGDDAQ
DQGLDGLERDLESTRESRAPSRDFDGPNFLQARRAE*
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mRNA from alignment at E-siliculosus-1a_F_contig1105:15544..19337+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig1105.718.1 ID=mRNA_E-siliculosus-1a_F_contig1105.718.1|Name=mRNA_E-siliculosus-1a_F_contig1105.718.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=3794bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1105:15544..19337+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGGCTGATGTGTTGTTCGACCGACCCACCGAGCCGGCTTCAGGTGTGTT
CCAGCCCAGTCCAGCCCAGTAGATCTGTGCATCTGTGTTTGGCTTTGGAA
TGAGTACGGGGAGGCTCGTACAGACTACATGCACCTCGACAGCAGTCTAC
ACAGTGAAACTACAATTGCCAGAAATAGACTACGTACAAAATGTAGCATC
GTGTACAAACCACACATTCAACATCGCACACACATGAAATGGGAACATTG
AAAACCTTGAGGAGAGGAGAGATACTTTCCCACCGGCAAAGGGTCTCCGA
GACCCGCATACCGTAATTGTGCGTGTTATCGCACCCCCGTGTCAACGTTT
TTCTATAAATAGCGCATTTCTCCACGACCAGGGAGGTGTCACCTCCGAAA
AGGGTGGGTTTGGAAACATCTCGTCGAGGGCTTTCCGGAGAGGTATCAGT
TGGTGTTCGCACCCTCCTAGTGGTGGAGAAATACGCTAGCTATTGAATAA
CGCTAACACGGGGGTACGATAACACGCACAATACGGTAGACTATTATTAT
TGCTCGATCCAAAAACAAATCAAATGTAGAGAACGCCTTCGCAATCCCTA
TTTGCCTATTACTGAGACATGTCTGTTTGTGAACCGCAACTATGCAACTC
CAGCGTCTTCCCCCCATTGTTCCAAGTGAAACACCAGTCCTCTCGACATT
CCGACGAGGGTACGTCAGAACCGTACCGTTCGGCATTACTCGCGTGTAAG
TCAAACTTCTAGGGGAGTTGCAGGGAGGGTATTGTCAGCACAGCCAATCA
GTCTTGGGGGGTCGTTTCTCTAGACTTCCCCCTTAACGCAAAGCGAATTT
CAACTCTGTAAATGGTAATGTATTTACATAGTTTTGTGTAATACCCTGGC
ATGGTGGCGTAGAGGCTGTGTCGTCCACGTTAGTCTAGGTGATGAAACGT
GCGAGAGGGCACATGTAGTCTGGAAGACGAGAGAGAGTCCTTCCAAGATC
TCAAGAAGATGTTGAGATATTGGAACGCTGGCGCTTATGCCCAACACAAT
CCGGAAGGATCACACGACAGAGTGGGCAGCTACTCGGCTAGCAAGCAGAG
AATCCCACGGGGGTGATTCCTCCGCATACACGTACGATCTACGATATACA
AGCCCTACTGAACATTGACTCAATCTGGCGATGTGCTAACATTTCCATAA
CACTCCCTTTCAATGAAAGTCGCTCTGAATTGTACCGAACTATTGATGAT
TAAGTCAAGCAAGTAATTCGTTTCCTGCGTGACTCAATTCGTCTCATGCA
TTTCAACCACTAATATACCAGGTGATATTTCATGTTTTGCACGTGCTACA
ATATATTCGTGGACTTGCAGAGATACCTGCTATTTTTTCCTGCATGTACC
AAAGTACCATGACTTTTCAATTTTCGTGGCTCGTTCAACCAGCGATGGTG
CGAGGCCGAATGGCGACTACCGAAAGAGTACGCTGATTCACACAAACAGA
ACAGATTAAAAAACACTTTGTACCAAACACACAAACAATATATATCACGG
TTGCTTGAACTTGTTGATGATGAAGTCGTACACGTTGAAGTTGTTGATGA
TGTCCAGTAGATGTTTGAGCCGATGCTTGTTTAAGTGTTTCGAGCTGATG
TCTGCAGGGTTGCTGTCCGTCGGGATGTAGTGGATGGAGATCCTTCCTTC
TGATAGGAGCTCTCGGATGGTACCAGACGGAAGGATCTCCATCCACTACA
TCCCGACGGACAGCAACCCTGCAGACATCAGCTCGAAACACTTAAACAAG
CATCGGCTCAAACATCTGCTGGACATCGTCAACAGTTTCAACGCCAACGA
CTTCAGCATCAACAAGTTCAAGTGATCGTGTTGGCGTTTGTGTGTTTGTT
ACGAAGCGTCATTGAATCTGTTCAGTTTATGTGAATCAGCGTACCTTTCG
ATAGTCGACATTCGGCCTCGCACCATCACTACACTGGTTGCGAGCCATGT
AGGATTGAACGAATTCGTACTTTGATTTATGCTGGAAACATAGCAGGTAC
TCTTTGCAAGCGCACGAATATATTGTAGCAGGTGGAAAACACGAAATCTT
ACTTGGTACATTAGTGGATGGAACGCATGAAACAAATTGAGTTACGCAGG
AAACGAAAATATTACTTGCTTGATTTAATCTCAATAGTTCGGCAATTCAG
AGCGGCTTTCATTGAGGGGGAGTGCTATGGAAATGTTTAACACGTAGCCA
GTATGAGTCAATGTTCAGTAGCACTGCTCTGGTATGTCGTAGATCTCATG
TGTGTCGGTTCGAATGTAACGTACGTATGCGGAGGAATCACTCCCGTGGG
ATTCTCGGCTTGCTAGCCGAGTAGCTGACTCTCTCGTGTGATGCTTACGG
ATTGTGTTGGCCACTTTCGCGCCAGTGTTCCACTATCTCAACATCTTCAC
ATCTTGGAAGGACTCTTCCAGGCTTCCCTCTTGCACGTGTCATCACCGCG
ACCAACGTCGACGACACAGCCTCTACGCCACCGTGCCAGGGTATTACACA
ATATCCGTGATAGGCTATGAGACTCGTTTGTGAAGGTGTACAGCATATCC
ATTACGCTACAAGTCGGCGTCCTCTCGTTTGCTCTCACATACGTTTTCTC
AAGGGGCTTCCTCAAAGACGTGCGCCTCTCGTATTGAATGACGTTCTCTT
GTCCCCTCCCCGTTTCAGCCCCGCGTGTGAGGGCGTTCGCTGAGGTCGCT
TTCAAAGAGATCCAATCGGTGGTAGGCAGCGACGCAAGTCTGTTGGCAGA
CAAGCTTGCGTTTGCCGAGTACATGGACAAGATTAACGAAAGGTATGCAT
AGGTCGTACATAGTGAGTAGAATTCATGTGAGAGTGGTAAGCCGACGCCA
GACATACCGATGACATTTCAAAATAGTTCGAGCCCACAGCGCTCATTCCC
GCCATGCATTCTCACTCTATTCGCGTTTGACAAGCGTATGTCCAGTATGG
TGAAACGCTCTTGCCCAGGGAGAAATATAACGACAAGAAACAGATCTTGG
AGACATCATCACATTTTTCCAATGTCCGACGTGTGTAGAATGAATAAAAA
CCAAACCCTCGTCTCTGTTCTGTCACGGCAGGACGACTTCCATCCTCCCA
TGTCTGCGTTCATCAGTTCTAGAAGGTCTCGTAGGCCGGCGTCGGCAATG
GCTTCTTTTCTGATTCATTTCGTTCTCACTCGTCCACTCGCGCCCTTCAG
CGTTCTTTTGGGGCTGCACGAGCCCCCGCCGGCCGCATCCGTCATCAATG
GTGGCAAACATGCGTTCGAGCAAGAGACGCAAGACAGTTCTTCCCATCAG
ACAGCGAAACCCAACTACCACGAGGCACCATCACCACTTCTTCATTCTTT
TAGCATCAACACCACCGAGGCGGACGCAGTTGCAAGCCCTCTCGAGGCAT
CATCGTGGAGGGCTGTGTCTTCTCTGCGGCGCCACCTCCGCCCAGTCGGC
ACTAATTCCGCGCTAGGACATTCGGCGATACTATCACCACCATCCTCCCC
GTGCAGCGCTAGAGTACACAAGGTGCGGTTCGACGTGGGTGCCGAGGAGA
AGGATCTCTGTACTGGCAAAAAGATATTCCCCACATCGGCGGCTCTGCAG
AATCGCAACCAAGGGCTTGGTGACGACGCTCAGGACCAGGGACTGGATGG
CCTGGAAAGAGACCTTGAATCCACCAGGGAGTCACGCGCACCGAGTCGTG
ACTTTGACGGACCGAACTTCCTGCAGGCACGTCGGGCAGAATAG
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1105:15544..19337+

>mRNA_E-siliculosus-1a_F_contig1105.718.1 ID=mRNA_E-siliculosus-1a_F_contig1105.718.1|Name=mRNA_E-siliculosus-1a_F_contig1105.718.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1422bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1105:15544..19337+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGGCTGATGTGTTGTTCGACCGACCCACCGAGCCGGCTTCAGATGGCTG
ATGTGTTGTTCGACCGACCCACCGAGCCGGCTTCAGCCCCGCGTGTGAGG
GCGTTCGCTGAGGTCGCTTTCAAAGAGATCCAATCGGTGGTAGGCAGCGA
CGCAAGTCTGTTGGCAGACAAGCTTGCGTTTGCCGAGTACATGGACAAGA
TTAACGAAAGCCCCGCGTGTGAGGGCGTTCGCTGAGGTCGCTTTCAAAGA
GATCCAATCGGTGGTAGGCAGCGACGCAAGTCTGTTGGCAGACAAGCTTG
CGTTTGCCGAGTACATGGACAAGATTAACGAAAGCGTTCTTTTGGGGCTG
CACGAGCCCCCGCCGGCCGCATCCGTCATCAATGGTGGCAAACATGCGTT
CGAGCAAGAGACGCAAGACAGTTCTTCCCATCAGACAGCGAAACCCAACT
ACCACGAGGCACCATCACCACTTCTTCATTCTTTTAGCATCAACACCACC
GAGGCGGACGCAGTTGCAAGCCCTCTCGAGGCATCATCGTGGAGGGCTGT
GTCTTCTCTGCGGCGCCACCTCCGCCCAGTCGGCACTAATTCCGCGCTAG
GACATTCGGCGATACTATCACCACCATCCTCCCCGTGCAGCGCTAGAGTA
CACAAGGTGCGGTTCGACGTGGGTGCCGAGGAGAAGGATCTCTGTACTGG
CAAAAAGATATTCCCCACATCGGCGGCTCTGCAGAATCGCAACCAAGGGC
TTGGTGACGACGCTCAGGACCAGGGACTGGATGGCCTGGAAAGAGACCTT
GAATCCACCAGGGAGTCACGCGCACCGAGTCGTGACTTTGACGGACCGAA
CTTCCTGCAGGCACGTCGGGCAGAATAGCGTTCTTTTGGGGCTGCACGAG
CCCCCGCCGGCCGCATCCGTCATCAATGGTGGCAAACATGCGTTCGAGCA
AGAGACGCAAGACAGTTCTTCCCATCAGACAGCGAAACCCAACTACCACG
AGGCACCATCACCACTTCTTCATTCTTTTAGCATCAACACCACCGAGGCG
GACGCAGTTGCAAGCCCTCTCGAGGCATCATCGTGGAGGGCTGTGTCTTC
TCTGCGGCGCCACCTCCGCCCAGTCGGCACTAATTCCGCGCTAGGACATT
CGGCGATACTATCACCACCATCCTCCCCGTGCAGCGCTAGAGTACACAAG
GTGCGGTTCGACGTGGGTGCCGAGGAGAAGGATCTCTGTACTGGCAAAAA
GATATTCCCCACATCGGCGGCTCTGCAGAATCGCAACCAAGGGCTTGGTG
ACGACGCTCAGGACCAGGGACTGGATGGCCTGGAAAGAGACCTTGAATCC
ACCAGGGAGTCACGCGCACCGAGTCGTGACTTTGACGGACCGAACTTCCT
GCAGGCACGTCGGGCAGAATAG
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