mRNA_E-siliculosus-1a_F_contig11038.711.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig11038.711.1
Unique NamemRNA_E-siliculosus-1a_F_contig11038.711.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig11038.711.1 vs. uniprot
Match: A0A6H5JFE7_9PHAE (J domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFE7_9PHAE)

HSP 1 Score: 343 bits (881), Expect = 8.910e-107
Identity = 231/316 (73.10%), Postives = 240/316 (75.95%), Query Frame = 1 
Query:    1 MRLGRIFTAAAKGKNPDPGTFYSVENAPDPLASSGAAGSSQPAYDGGYGGGDAGFDISNGYNGXXXXFTARAEGWREGGXPRXXXXXXXXXXXXXXXXXXASGSRDYEGEMGVGSGESEASFDGCLYSGSGGS--GGASFGVEKTFLAFDADDDSTGGGMGGSVGCRDDGFGGHGVASGGGDFCAHERGEVEEDEMLEPFAEKRSWPPQPPDLPFRAHDDGGVSCSSDPPGGCDDAIVGAISGISG------GSSLSDSHQRVPRNTDGRAGVRGDIGQRQEGEMMSRPDVLPERSFFGRRRAAEDDWRDPGAATP 924
            MRLGRIFTAAAKGKNPD GTFYSVENAPDPLASSGAAGSSQPAY GG     AGFDISNG+N     +TAR EGWREG X  XXXXXXXXXXXXXXXXXXASG R YEGEM V SGE EASFDG LYSGSGG   GGASFGVEKTF A+DADDDSTGGGMG SVG               G F A ER EV+  E+LEPFAEKRSWPPQPPD P RAHD GG + +  P GGCDDAIVG I+ ISG      GSSLSDSHQ VPRN D RA  RGDIGQ Q  E MSRP VLPERSFFGR+ AAEDDWRD GAATP
Sbjct:  534 MRLGRIFTAAAKGKNPDSGTFYSVENAPDPLASSGAAGSSQPAYGGGXXXXXAGFDISNGHNCGGGGYTAREEGWREGXXXXXXXXXXXXXXXXXXXXXXASGPRGYEGEMRVESGEREASFDGRLYSGSGGGCGGGASFGVEKTFCAYDADDDSTGGGMGRSVGRXXXXXXXXXXXXXXG-FRAQER-EVDGKEILEPFAEKRSWPPQPPDFPCRAHD-GGATSTCVPHGGCDDAIVGGITEISGIXXXXGGSSLSDSHQGVPRNMDDRARDRGDIGQGQGRETMSRPGVLPERSFFGRQGAAEDDWRDSGAATP 846
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BLAST of mRNA_E-siliculosus-1a_F_contig11038.711.1 vs. uniprot
Match: D8LDC2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDC2_ECTSI)

HSP 1 Score: 62.0 bits (149), Expect = 6.250e-9
Identity = 39/57 (68.42%), Postives = 40/57 (70.18%), Query Frame = 2 
Query:  647 MMMVVFRVVLILPVVVMTPLLERSPGSPAEVA----SVTVTNGFRGTRMVEQGCEAT 805
            MMMVVFRVVLILPVVVM PLLE SP SP   A    +VTV   FRG  M  QGCEAT
Sbjct:    1 MMMVVFRVVLILPVVVMAPLLEGSPVSPVSPAEASVTVTVIKAFRGIWMAGQGCEAT 57
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig11038.711.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JFE7_9PHAE8.910e-10773.10J domain-containing protein n=1 Tax=Ectocarpus sp.... [more]
D8LDC2_ECTSI6.250e-968.42Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig11038contigE-siliculosus-1a_F_contig11038:68..1351 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size927
Model size1284
Exons1
Ec32 orthologEc-25_001790.1
Ec32 ortholog descriptionhypothetical protein
Hectar predicted targeting categoryother localisation
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927610.9732559-CDS-E-siliculosus-1a_F_contig11038:67..9941622927610.9732559-CDS-E-siliculosus-1a_F_contig11038:67..994Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig11038 68..994 +
1696318608.7070398-CDS-E-siliculosus-1a_F_contig11038:67..9941696318608.7070398-CDS-E-siliculosus-1a_F_contig11038:67..994Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig11038 68..994 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927610.9851584-UTR-E-siliculosus-1a_F_contig11038:994..13511622927610.9851584-UTR-E-siliculosus-1a_F_contig11038:994..1351Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig11038 995..1351 +
1696318608.715533-UTR-E-siliculosus-1a_F_contig11038:994..13511696318608.715533-UTR-E-siliculosus-1a_F_contig11038:994..1351Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig11038 995..1351 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig11038.711.1prot_E-siliculosus-1a_F_contig11038.711.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig11038 68..994 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig11038.711.1

>prot_E-siliculosus-1a_F_contig11038.711.1 ID=prot_E-siliculosus-1a_F_contig11038.711.1|Name=mRNA_E-siliculosus-1a_F_contig11038.711.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=309bp
MRLGRIFTAAAKGKNPDPGTFYSVENAPDPLASSGAAGSSQPAYDGGYGG
GDAGFDISNGYNGGGGGFTARAEGWREGGGPRGGGGGDEGPPPPPPPPPP
ASGSRDYEGEMGVGSGESEASFDGCLYSGSGGSGGASFGVEKTFLAFDAD
DDSTGGGMGGSVGCRDDGFGGHGVASGGGDFCAHERGEVEEDEMLEPFAE
KRSWPPQPPDLPFRAHDDGGVSCSSDPPGGCDDAIVGAISGISGGSSLSD
SHQRVPRNTDGRAGVRGDIGQRQEGEMMSRPDVLPERSFFGRRRAAEDDW
RDPGAATP*
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mRNA from alignment at E-siliculosus-1a_F_contig11038:68..1351+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig11038.711.1 ID=mRNA_E-siliculosus-1a_F_contig11038.711.1|Name=mRNA_E-siliculosus-1a_F_contig11038.711.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=1284bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig11038:68..1351+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGCGACTAGGTCGAATTTTCACTGCGGCGGCAAAGGGCAAGAACCCCGA
CCCCGGAACCTTTTACTCGGTAGAGAACGCGCCCGACCCTCTCGCCTCCT
CCGGCGCTGCGGGGTCTTCGCAGCCCGCGTACGACGGTGGGTACGGTGGC
GGTGACGCCGGCTTCGACATCTCGAACGGTTACAACGGCGGTGGCGGCGG
GTTTACGGCGAGGGCGGAGGGTTGGCGGGAAGGGGGGGGCCCCCGGGGGG
GGGGGGGGGGGGATGAGGGCCCGCCGCCACCGCCGCCGCCGCCGCCGCCG
GCCTCCGGCTCTAGAGATTACGAGGGGGAGATGGGCGTCGGGAGCGGTGA
GAGTGAGGCTAGCTTTGACGGTTGCCTATACAGCGGTAGTGGTGGTAGTG
GTGGTGCGTCGTTCGGCGTTGAGAAAACGTTCCTCGCGTTTGATGCTGAT
GACGACTCCACGGGGGGGGGAATGGGTGGGAGTGTCGGCTGCAGGGATGA
TGGCTTTGGTGGTCATGGAGTAGCGTCAGGCGGGGGTGATTTTTGCGCTC
ACGAGAGGGGAGAAGTGGAGGAAGACGAGATGTTGGAGCCATTTGCTGAG
AAGCGAAGCTGGCCGCCGCAGCCTCCGGATTTGCCTTTCCGTGCCCATGA
TGATGGTGGTGTTTCGTGTAGTTCTGATCCTCCCGGTGGTTGTGATGACG
CCATTGTTGGAGCGATCTCCGGGATCTCCGGCGGAAGTAGCCTCAGTGAC
AGTCACCAACGGGTTCCGCGGAACACGGATGGTCGAGCAGGGGTGCGAGG
CGACATCGGGCAGCGTCAGGAGGGGGAGATGATGTCTCGCCCTGACGTTT
TGCCAGAAAGAAGCTTCTTCGGGAGACGCAGGGCGGCGGAAGACGATTGG
AGAGACCCTGGTGCTGCTACTCCGTAGAAGATGTGCGTTGTTGTTTGACA
GGGAGAGACAGAGGGATGAGAGAAGTTTTTGTGGTGTTGGTAGTTGATTG
TTGTGTCGCACCCCTTATCTAATAGTTGAGTAGTTCGGGGCTTGAAAGTC
GGAGAGGTAACTGTTTGCCCACGCATGTATCTGCTCCTGCGTGGTCTTAT
CATAGTGTTGTTACACACAATTTTATTTGTTGTTTGTGTTTTAGGTTGGA
TGTACTGTAGGCGTATGTGCGTGGAAGGAAGTTCGCGGGTGGTGTTGTGG
AGCGACTGCCGCTGAATGAACCGTGAGGAGCGAGGAAGAAATGCAACGAG
CGAACGAATGAAAACATTTCCTCAGAGACGTGTG
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig11038:68..1351+

>mRNA_E-siliculosus-1a_F_contig11038.711.1 ID=mRNA_E-siliculosus-1a_F_contig11038.711.1|Name=mRNA_E-siliculosus-1a_F_contig11038.711.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1854bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig11038:68..1351+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGCGACTAGGTCGAATTTTCACTGCGGCGGCAAAGGGCAAGAACCCCGA
CCCCGGAACCTTTTACTCGGTAGAGAACGCGCCCGACCCTCTCGCCTCCT
CCGGCGCTGCGGGGTCTTCGCAGCCCGCGTACGACGGTGGGTACGGTGGC
GGTGACGCCGGCTTCGACATCTCGAACGGTTACAACGGCGGTGGCGGCGG
GTTTACGGCGAGGGCGGAGGGTTGGCGGGAAGGGGGGGGCCCCCGGGGGG
GGGGGGGGGGGGATGAGGGCCCGCCGCCACCGCCGCCGCCGCCGCCGCCG
GCCTCCGGCTCTAGAGATTACGAGGGGGAGATGGGCGTCGGGAGCGGTGA
GAGTGAGGCTAGCTTTGACGGTTGCCTATACAGCGGTAGTGGTGGTAGTG
GTGGTGCGTCGTTCGGCGTTGAGAAAACGTTCCTCGCGTTTGATGCTGAT
GACGACTCCACGGGGGGGGGAATGGGTGGGAGTGTCGGCTGCAGGGATGA
TGGCTTTGGTGGTCATGGAGTAGCGTCAGGCGGGGGTGATTTTTGCGCTC
ACGAGAGGGGAGAAGTGGAGGAAGACGAGATGTTGGAGCCATTTGCTGAG
AAGCGAAGCTGGCCGCCGCAGCCTCCGGATTTGCCTTTCCGTGCCCATGA
TGATGGTGGTGTTTCGTGTAGTTCTGATCCTCCCGGTGGTTGTGATGACG
CCATTGTTGGAGCGATCTCCGGGATCTCCGGCGGAAGTAGCCTCAGTGAC
AGTCACCAACGGGTTCCGCGGAACACGGATGGTCGAGCAGGGGTGCGAGG
CGACATCGGGCAGCGTCAGGAGGGGGAGATGATGTCTCGCCCTGACGTTT
TGCCAGAAAGAAGCTTCTTCGGGAGACGCAGGGCGGCGGAAGACGATTGG
AGAGACCCTGGTGCTGCTACTCCGTAGATGCGACTAGGTCGAATTTTCAC
TGCGGCGGCAAAGGGCAAGAACCCCGACCCCGGAACCTTTTACTCGGTAG
AGAACGCGCCCGACCCTCTCGCCTCCTCCGGCGCTGCGGGGTCTTCGCAG
CCCGCGTACGACGGTGGGTACGGTGGCGGTGACGCCGGCTTCGACATCTC
GAACGGTTACAACGGCGGTGGCGGCGGGTTTACGGCGAGGGCGGAGGGTT
GGCGGGAAGGGGGGGGCCCCCGGGGGGGGGGGGGGGGGGATGAGGGCCCG
CCGCCACCGCCGCCGCCGCCGCCGCCGGCCTCCGGCTCTAGAGATTACGA
GGGGGAGATGGGCGTCGGGAGCGGTGAGAGTGAGGCTAGCTTTGACGGTT
GCCTATACAGCGGTAGTGGTGGTAGTGGTGGTGCGTCGTTCGGCGTTGAG
AAAACGTTCCTCGCGTTTGATGCTGATGACGACTCCACGGGGGGGGGAAT
GGGTGGGAGTGTCGGCTGCAGGGATGATGGCTTTGGTGGTCATGGAGTAG
CGTCAGGCGGGGGTGATTTTTGCGCTCACGAGAGGGGAGAAGTGGAGGAA
GACGAGATGTTGGAGCCATTTGCTGAGAAGCGAAGCTGGCCGCCGCAGCC
TCCGGATTTGCCTTTCCGTGCCCATGATGATGGTGGTGTTTCGTGTAGTT
CTGATCCTCCCGGTGGTTGTGATGACGCCATTGTTGGAGCGATCTCCGGG
ATCTCCGGCGGAAGTAGCCTCAGTGACAGTCACCAACGGGTTCCGCGGAA
CACGGATGGTCGAGCAGGGGTGCGAGGCGACATCGGGCAGCGTCAGGAGG
GGGAGATGATGTCTCGCCCTGACGTTTTGCCAGAAAGAAGCTTCTTCGGG
AGACGCAGGGCGGCGGAAGACGATTGGAGAGACCCTGGTGCTGCTACTCC
GTAG
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