mRNA_E-siliculosus-1a_F_contig11037.710.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig11037.710.1
Unique NamemRNA_E-siliculosus-1a_F_contig11037.710.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig11037.710.1 vs. uniprot
Match: A0A6H5KVA0_9PHAE (Formate--tetrahydrofolate ligase n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KVA0_9PHAE)

HSP 1 Score: 154 bits (390), Expect = 1.710e-42
Identity = 74/75 (98.67%), Postives = 74/75 (98.67%), Query Frame = 3 
Query:    3 LPICVAKTQYSLSTDPSAKGAPSGHTVFVRDVRASVGAGFVYLLCGDINTIPGLPARPGFYDVDIDFGTGRVVGL 227
            LPICVAKTQYSLSTDPSAKGAPSGHTVFVRDVRASVGAGFVYLLCGDINTIPGLP RPGFYDVDIDFGTGRVVGL
Sbjct:  570 LPICVAKTQYSLSTDPSAKGAPSGHTVFVRDVRASVGAGFVYLLCGDINTIPGLPTRPGFYDVDIDFGTGRVVGL 644
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BLAST of mRNA_E-siliculosus-1a_F_contig11037.710.1 vs. uniprot
Match: W7TK34_9STRA (Formate-tetrahydrofolate ligase n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TK34_9STRA)

HSP 1 Score: 119 bits (298), Expect = 1.970e-33
Identity = 56/75 (74.67%), Postives = 63/75 (84.00%), Query Frame = 3 
Query:    3 LPICVAKTQYSLSTDPSAKGAPSGHTVFVRDVRASVGAGFVYLLCGDINTIPGLPARPGFYDVDIDFGTGRVVGL 227
            LP+CVAKTQYSLS D +AKG P+G  V VR++RA VGAGF+Y L GDI TIPGLP RPGFYDVDIDF TGR+VGL
Sbjct:   28 LPMCVAKTQYSLSCDATAKGVPTGFKVAVREIRACVGAGFLYALAGDIMTIPGLPTRPGFYDVDIDFATGRIVGL 102
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BLAST of mRNA_E-siliculosus-1a_F_contig11037.710.1 vs. uniprot
Match: A0A4Q5Y295_9DELT (Formate--tetrahydrofolate ligase n=1 Tax=Myxococcaceae bacterium TaxID=2484252 RepID=A0A4Q5Y295_9DELT)

HSP 1 Score: 122 bits (305), Expect = 2.440e-33
Identity = 56/75 (74.67%), Postives = 64/75 (85.33%), Query Frame = 3 
Query:    3 LPICVAKTQYSLSTDPSAKGAPSGHTVFVRDVRASVGAGFVYLLCGDINTIPGLPARPGFYDVDIDFGTGRVVGL 227
            LP+C+AKTQYSLSTD S KG P G +V VRDVRA+VGAG++Y +CGDI TIPGLP RPGFYDVD+D  TGRVVGL
Sbjct:  121 LPVCMAKTQYSLSTDASKKGVPRGFSVTVRDVRAAVGAGYIYPICGDIMTIPGLPTRPGFYDVDVDLDTGRVVGL 195
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BLAST of mRNA_E-siliculosus-1a_F_contig11037.710.1 vs. uniprot
Match: A0A8J2SYL7_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SYL7_9STRA)

HSP 1 Score: 126 bits (316), Expect = 4.660e-32
Identity = 59/75 (78.67%), Postives = 66/75 (88.00%), Query Frame = 3 
Query:    3 LPICVAKTQYSLSTDPSAKGAPSGHTVFVRDVRASVGAGFVYLLCGDINTIPGLPARPGFYDVDIDFGTGRVVGL 227
            LPICVAKTQYSLSTDPS KGAPSGHTV VR+VRA+VGAGF+YLLCGDI T+PGLP RPGF D+D+D    RV+GL
Sbjct:  935 LPICVAKTQYSLSTDPSKKGAPSGHTVNVREVRAAVGAGFLYLLCGDIMTVPGLPTRPGFVDIDLDTVNDRVIGL 1009
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BLAST of mRNA_E-siliculosus-1a_F_contig11037.710.1 vs. uniprot
Match: A0A4D9CUJ7_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CUJ7_9STRA)

HSP 1 Score: 119 bits (298), Expect = 1.610e-31
Identity = 56/75 (74.67%), Postives = 63/75 (84.00%), Query Frame = 3 
Query:    3 LPICVAKTQYSLSTDPSAKGAPSGHTVFVRDVRASVGAGFVYLLCGDINTIPGLPARPGFYDVDIDFGTGRVVGL 227
            LP+CVAKTQYSLS D +AKG P+G  V VR++RA VGAGF+Y L GDI TIPGLP RPGFYDVDIDF TGR+VGL
Sbjct:  192 LPMCVAKTQYSLSCDAAAKGVPTGFKVAVREIRACVGAGFLYALAGDIMTIPGLPTRPGFYDVDIDFATGRIVGL 266
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BLAST of mRNA_E-siliculosus-1a_F_contig11037.710.1 vs. uniprot
Match: A0A6U0RF96_9STRA (Hypothetical protein n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A6U0RF96_9STRA)

HSP 1 Score: 117 bits (292), Expect = 1.970e-31
Identity = 54/75 (72.00%), Postives = 61/75 (81.33%), Query Frame = 3 
Query:    3 LPICVAKTQYSLSTDPSAKGAPSGHTVFVRDVRASVGAGFVYLLCGDINTIPGLPARPGFYDVDIDFGTGRVVGL 227
            LPIC+AKTQYS S DPSAKG P+G  + VR++RA VGAGF+Y +CGDI TIPGLP RPGFYDVDID  TG V GL
Sbjct:  116 LPICIAKTQYSFSCDPSAKGVPTGFRISVREIRACVGAGFLYPICGDIMTIPGLPTRPGFYDVDIDVETGEVKGL 190
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BLAST of mRNA_E-siliculosus-1a_F_contig11037.710.1 vs. uniprot
Match: A0A8K1FBV6_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FBV6_PYTOL)

HSP 1 Score: 124 bits (310), Expect = 2.410e-31
Identity = 56/75 (74.67%), Postives = 65/75 (86.67%), Query Frame = 3 
Query:    3 LPICVAKTQYSLSTDPSAKGAPSGHTVFVRDVRASVGAGFVYLLCGDINTIPGLPARPGFYDVDIDFGTGRVVGL 227
            LP+C AKT  SLSTDP+AKG P+G TV VRD+RASVGAGFVYLLCGD+ T+PGLP RPGFYDVD+D  TG+V+GL
Sbjct:  563 LPVCCAKTHLSLSTDPTAKGVPTGFTVTVRDIRASVGAGFVYLLCGDMMTVPGLPTRPGFYDVDLDVETGKVIGL 637
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BLAST of mRNA_E-siliculosus-1a_F_contig11037.710.1 vs. uniprot
Match: A0A6U4C1F9_9STRA (Formate--tetrahydrofolate ligase n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A6U4C1F9_9STRA)

HSP 1 Score: 123 bits (309), Expect = 3.400e-31
Identity = 58/75 (77.33%), Postives = 64/75 (85.33%), Query Frame = 3 
Query:    3 LPICVAKTQYSLSTDPSAKGAPSGHTVFVRDVRASVGAGFVYLLCGDINTIPGLPARPGFYDVDIDFGTGRVVGL 227
            LPIC+AKTQYSLS D + KG P+  TV VRDVRASVGAGF+Y +CGDI TIPGLP RPGFYDVD+DF TGRVVGL
Sbjct:  573 LPICIAKTQYSLSCDAALKGVPTDFTVTVRDVRASVGAGFLYFICGDIMTIPGLPTRPGFYDVDLDFETGRVVGL 647
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BLAST of mRNA_E-siliculosus-1a_F_contig11037.710.1 vs. uniprot
Match: F0YQT5_AURAN (Uncharacterized protein (Fragment) n=2 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YQT5_AURAN)

HSP 1 Score: 114 bits (284), Expect = 4.520e-31
Identity = 51/75 (68.00%), Postives = 60/75 (80.00%), Query Frame = 3 
Query:    3 LPICVAKTQYSLSTDPSAKGAPSGHTVFVRDVRASVGAGFVYLLCGDINTIPGLPARPGFYDVDIDFGTGRVVGL 227
            LP+C+AKTQYSLSTD   KG P GHTV VR+VRA+ GAGF+Y+LCGDI T+PGLP RPGF D+D D    RV+GL
Sbjct:   46 LPVCIAKTQYSLSTDAKLKGVPEGHTVNVREVRAAAGAGFLYMLCGDIMTVPGLPTRPGFVDIDYDHEKDRVLGL 120
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig11037.710.1 vs. uniprot
Match: A0A2D4C5S4_PYTIN (Formate--tetrahydrofolate ligase n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4C5S4_PYTIN)

HSP 1 Score: 122 bits (307), Expect = 5.050e-31
Identity = 56/75 (74.67%), Postives = 64/75 (85.33%), Query Frame = 3 
Query:    3 LPICVAKTQYSLSTDPSAKGAPSGHTVFVRDVRASVGAGFVYLLCGDINTIPGLPARPGFYDVDIDFGTGRVVGL 227
            LP+C AKT  SLSTDP AKG P+G TV VRD+RASVGAGFVYLLCGD+ T+PGLP RPGFYDVD+D  TG+V+GL
Sbjct:  508 LPVCCAKTHLSLSTDPXAKGVPTGFTVTVRDIRASVGAGFVYLLCGDMMTVPGLPTRPGFYDVDLDTETGKVIGL 582
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig11037.710.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KVA0_9PHAE1.710e-4298.67Formate--tetrahydrofolate ligase n=2 Tax=Ectocarpu... [more]
W7TK34_9STRA1.970e-3374.67Formate-tetrahydrofolate ligase n=1 Tax=Nannochlor... [more]
A0A4Q5Y295_9DELT2.440e-3374.67Formate--tetrahydrofolate ligase n=1 Tax=Myxococca... [more]
A0A8J2SYL7_9STRA4.660e-3278.67Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A4D9CUJ7_9STRA1.610e-3174.67Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
A0A6U0RF96_9STRA1.970e-3172.00Hypothetical protein n=1 Tax=Eucampia antarctica T... [more]
A0A8K1FBV6_PYTOL2.410e-3174.67Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A6U4C1F9_9STRA3.400e-3177.33Formate--tetrahydrofolate ligase n=1 Tax=Phaeomona... [more]
F0YQT5_AURAN4.520e-3168.00Uncharacterized protein (Fragment) n=2 Tax=Aureoco... [more]
A0A2D4C5S4_PYTIN5.050e-3174.67Formate--tetrahydrofolate ligase n=1 Tax=Pythium i... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig11037contigE-siliculosus-1a_F_contig11037:839..1696 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start0
Stop0
Cds size228
Model size231
Exons2
Hectar predicted targeting categorymitochondrion
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927610.8717973-CDS-E-siliculosus-1a_F_contig11037:840..9881622927610.8717973-CDS-E-siliculosus-1a_F_contig11037:840..988Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig11037 841..988 -
1696318608.6834185-CDS-E-siliculosus-1a_F_contig11037:840..9881696318608.6834185-CDS-E-siliculosus-1a_F_contig11037:840..988Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig11037 841..988 -
1622927610.886349-CDS-E-siliculosus-1a_F_contig11037:1616..16961622927610.886349-CDS-E-siliculosus-1a_F_contig11037:1616..1696Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig11037 1617..1696 -
1696318608.6907759-CDS-E-siliculosus-1a_F_contig11037:1616..16961696318608.6907759-CDS-E-siliculosus-1a_F_contig11037:1616..1696Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig11037 1617..1696 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig11037.710.1prot_E-siliculosus-1a_F_contig11037.710.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig11037 841..1696 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig11037.710.1

>prot_E-siliculosus-1a_F_contig11037.710.1 ID=prot_E-siliculosus-1a_F_contig11037.710.1|Name=mRNA_E-siliculosus-1a_F_contig11037.710.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=76bp
SCRFAWRRRSIHFPRTRRLRGPRQDIRFSYAMCGLPWGQGSCTFFAATLT
PSRAFQHGRVSMTLTSTSAQGVLLVC
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mRNA from alignment at E-siliculosus-1a_F_contig11037:839..1696-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig11037.710.1 ID=mRNA_E-siliculosus-1a_F_contig11037.710.1|Name=mRNA_E-siliculosus-1a_F_contig11037.710.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=858bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig11037:839..1696- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
AGCTGCCGATTTGCGTGGCGAAGACGCAGTATTCACTTTCCACGGACCCG
TCGGCTAAGGGGGCCCCGTCAGGACATACGGTGAGGGGGTGGTGACGTCA
CCAGAGAAGAGGTTCTCCTACCTCTGTGCGAACGCCTAACTGCTGTTTTA
TGTGTGTCGATTGTTTCTTGCAGGGTATATAAACCGGGGATACTATTTGC
TTGTCTTGTGATTGTCATGCCGCGGGACTCGGGAAGTTCCCCCGTCTTTC
TTCCTGCTGTTTTCTGTGTGCAGTCTATTTTTTGTCTGGCTGTCATGACT
TTGGGAGGGTCAAGTCTGTGTTTAACTGCGTTGCTGTGGCAGCCATTTAT
TCCTGCTGATTTAAGCAAATATCTTCCGCAAGGGCACTGGTTCACCTGAT
AGCTCGCTCTCGAACCTGTGTCATGCGAAAGTATGGGTATCGTGACGATA
TCAAACCCTGCCTGCCGTCGGCGATGAGCACAACCCGATGACGGCCGGGG
CCTGGAGTGGTGATCTATTCCCATGTGGATTCAATGAAGCACGACGAACT
GCTAGCTTTGGTAGTTCGTACCGAAGCTATTGACAAAACAGACAGCAGTC
TAGCTTTTCATTTGTTTTTTTCATACCGCTCGTCCTTCTTTCATTTTACT
CACACAGCTGGTTGTTGTCTGTTTTTCCGTCTACTTATTGAAAATATTAT
TCATTCAGGTTTTCGTACGCGATGTGCGGGCTTCCGTGGGGGCAGGGTTC
GTGTACCTTCTTTGCGGCGACATTAACACCATCCCGGGCCTTCCAGCACG
GCCGGGTTTCTATGACGTTGACATCGACTTCGGCACAGGGCGTGTTGTTG
GTCTGTTT
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig11037:839..1696-

>mRNA_E-siliculosus-1a_F_contig11037.710.1 ID=mRNA_E-siliculosus-1a_F_contig11037.710.1|Name=mRNA_E-siliculosus-1a_F_contig11037.710.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=456bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig11037:839..1696- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
AGCTGCCGATTTGCGTGGCGAAGACGCAGTATTCACTTTCCACGGACCCG
TCGGCTAAGGGGGCCCCGTCAGGACATACGAGCTGCCGATTTGCGTGGCG
AAGACGCAGTATTCACTTTCCACGGACCCGTCGGCTAAGGGGGCCCCGTC
AGGACATACGGTTTTCGTACGCGATGTGCGGGCTTCCGTGGGGGCAGGGT
TCGTGTACCTTCTTTGCGGCGACATTAACACCATCCCGGGCCTTCCAGCA
CGGCCGGGTTTCTATGACGTTGACATCGACTTCGGCACAGGGCGTGTTGT
TGGTCTGTGTTTTCGTACGCGATGTGCGGGCTTCCGTGGGGGCAGGGTTC
GTGTACCTTCTTTGCGGCGACATTAACACCATCCCGGGCCTTCCAGCACG
GCCGGGTTTCTATGACGTTGACATCGACTTCGGCACAGGGCGTGTTGTTG
GTCTGT
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