mRNA_E-siliculosus-1a_F_contig11022.706.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig11022.706.1
Unique NamemRNA_E-siliculosus-1a_F_contig11022.706.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig11022.706.1 vs. uniprot
Match: A0A6H5KRY8_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KRY8_9PHAE)

HSP 1 Score: 109 bits (272), Expect = 1.020e-26
Identity = 54/57 (94.74%), Postives = 55/57 (96.49%), Query Frame = 1 
Query:    1 QGIALVETRDGKGKDKNASPVSYVPASGLPFSPAERLAALFRIKPKWPMAELEPYIS 171
            +GIALVETRD KGKDKNAS VSYVPASGLPFSPAERLAALFRIKPKWPMAELEPYIS
Sbjct:  388 KGIALVETRDSKGKDKNASLVSYVPASGLPFSPAERLAALFRIKPKWPMAELEPYIS 444
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BLAST of mRNA_E-siliculosus-1a_F_contig11022.706.1 vs. uniprot
Match: I0Z8H1_COCSC (Uncharacterized protein n=1 Tax=Coccomyxa subellipsoidea (strain C-169) TaxID=574566 RepID=I0Z8H1_COCSC)

HSP 1 Score: 46.6 bits (109), Expect = 3.900e-5
Identity = 17/35 (48.57%), Postives = 27/35 (77.14%), Query Frame = 1 
Query:   67 YVPASGLPFSPAERLAALFRIKPKWPMAELEPYIS 171
            ++PA+ +P  PA R AALF +KP+W + +LEPY++
Sbjct:   25 HLPAAAMPTDPAARFAALFAVKPRWELPDLEPYLA 59
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BLAST of mRNA_E-siliculosus-1a_F_contig11022.706.1 vs. uniprot
Match: A0A7R9Y8B8_MICPS (Hypothetical protein n=1 Tax=Micromonas pusilla TaxID=38833 RepID=A0A7R9Y8B8_MICPS)

HSP 1 Score: 46.6 bits (109), Expect = 8.040e-5
Identity = 26/56 (46.43%), Postives = 34/56 (60.71%), Query Frame = 1 
Query:    1 QGIALVETRDGKGKDKNASPVSYVPASGLPFSPAERLAALFRIKPKWPMAELEPYI 168
            +G+ALV+   G    +NA  V    A  LP +P ER  ALF +KP+W M ELEPY+
Sbjct:   45 RGLALVDKTAGVDGSENAF-VRPFRADRLPKTPKERFHALFTLKPRWTMDELEPYV 99
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig11022.706.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5KRY8_9PHAE1.020e-2694.74Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
I0Z8H1_COCSC3.900e-548.57Uncharacterized protein n=1 Tax=Coccomyxa subellip... [more]
A0A7R9Y8B8_MICPS8.040e-546.43Hypothetical protein n=1 Tax=Micromonas pusilla Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig11022contigE-siliculosus-1a_F_contig11022:148..321 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start0
Stop1
Cds size174
Model size174
Exons1
Hectar predicted targeting categoryno signal peptide or anchor
BRITEko00000,ko00001,ko03036,ko04121
Best eggNOG OGNA|NA|NA
Best tax levelEukaryota
COG Functional cat.DTZ
EggNOG OGsKOG0798@1,KOG0798@2759
EggNOG free text desc.maintenance of mitotic sister chromatid cohesion
GOsGO:0000070,GO:0000278,GO:0000280,GO:0000775,GO:0000785,GO:0000819,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0006139,GO:0006259,GO:0006275,GO:0006464,GO:0006473,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007049,GO:0007059,GO:0007062,GO:0007064,GO:0008150,GO:0008152,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0010556,GO:0010557,GO:0010604,GO:0016043,GO:0019219,GO:0019222,GO:0019538,GO:0022402,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031390,GO:0031974,GO:0031981,GO:0032991,GO:0033554,GO:0034086,GO:0034088,GO:0034421,GO:0034641,GO:0035753,GO:0036211,GO:0043085,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0043543,GO:0043570,GO:0043687,GO:0044093,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044464,GO:0045935,GO:0046483,GO:0048285,GO:0048518,GO:0048522,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051052,GO:0051054,GO:0051171,GO:0051173,GO:0051276,GO:0051338,GO:0051347,GO:0051716,GO:0060255,GO:0065007,GO:0065009,GO:0070013,GO:0071704,GO:0071840,GO:0080090,GO:0090304,GO:0090329,GO:0098687,GO:0098813,GO:0140014,GO:1900262,GO:1900264,GO:1901360,GO:1901564,GO:1903047,GO:2000112,GO:2000278,GO:2000573
KEGG Pathwayko04120,map04120
KEGG koko:K03876,ko:K11271
Preferred nameDSCC1
Seed eggNOG ortholog2880.D8LLS1
Seed ortholog evalue6.4e-21
Seed ortholog score105.9
Taxonomic scopeEukaryota
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927609.8653872-CDS-E-siliculosus-1a_F_contig11022:147..3211622927609.8653872-CDS-E-siliculosus-1a_F_contig11022:147..321Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig11022 148..321 +
1696318608.2810228-CDS-E-siliculosus-1a_F_contig11022:147..3211696318608.2810228-CDS-E-siliculosus-1a_F_contig11022:147..321Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig11022 148..321 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig11022.706.1prot_E-siliculosus-1a_F_contig11022.706.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig11022 148..321 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig11022.706.1

>prot_E-siliculosus-1a_F_contig11022.706.1 ID=prot_E-siliculosus-1a_F_contig11022.706.1|Name=mRNA_E-siliculosus-1a_F_contig11022.706.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=58bp
QGIALVETRDGKGKDKNASPVSYVPASGLPFSPAERLAALFRIKPKWPMA
ELEPYIS*
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mRNA from alignment at E-siliculosus-1a_F_contig11022:148..321+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig11022.706.1 ID=mRNA_E-siliculosus-1a_F_contig11022.706.1|Name=mRNA_E-siliculosus-1a_F_contig11022.706.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=174bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig11022:148..321+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
CAGGGCATCGCCCTTGTGGAGACGAGAGACGGCAAGGGCAAGGACAAGAA
CGCCTCGCCGGTGTCTTACGTCCCGGCGTCCGGCCTGCCCTTCTCCCCTG
CCGAGCGGCTGGCCGCGCTGTTCCGGATCAAGCCCAAGTGGCCCATGGCA
GAGCTCGAGCCCTACATATCGTGA
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig11022:148..321+

>mRNA_E-siliculosus-1a_F_contig11022.706.1 ID=mRNA_E-siliculosus-1a_F_contig11022.706.1|Name=mRNA_E-siliculosus-1a_F_contig11022.706.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=348bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig11022:148..321+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
CAGGGCATCGCCCTTGTGGAGACGAGAGACGGCAAGGGCAAGGACAAGAA
CGCCTCGCCGGTGTCTTACGTCCCGGCGTCCGGCCTGCCCTTCTCCCCTG
CCGAGCGGCTGGCCGCGCTGTTCCGGATCAAGCCCAAGTGGCCCATGGCA
GAGCTCGAGCCCTACATATCGTGACAGGGCATCGCCCTTGTGGAGACGAG
AGACGGCAAGGGCAAGGACAAGAACGCCTCGCCGGTGTCTTACGTCCCGG
CGTCCGGCCTGCCCTTCTCCCCTGCCGAGCGGCTGGCCGCGCTGTTCCGG
ATCAAGCCCAAGTGGCCCATGGCAGAGCTCGAGCCCTACATATCGTGA
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