prot_E-siliculosus-1a_F_contig11022.706.1 (polypeptide) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_E-siliculosus-1a_F_contig11022.706.1
Unique Nameprot_E-siliculosus-1a_F_contig11022.706.1
Typepolypeptide
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Sequence length58
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig11022.706.1 vs. uniprot
Match: A0A6H5KRY8_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KRY8_9PHAE)

HSP 1 Score: 109 bits (272), Expect = 1.020e-26
Identity = 54/57 (94.74%), Postives = 55/57 (96.49%), Query Frame = 0 
Query:    1 QGIALVETRDGKGKDKNASPVSYVPASGLPFSPAERLAALFRIKPKWPMAELEPYIS 57
            +GIALVETRD KGKDKNAS VSYVPASGLPFSPAERLAALFRIKPKWPMAELEPYIS
Sbjct:  388 KGIALVETRDSKGKDKNASLVSYVPASGLPFSPAERLAALFRIKPKWPMAELEPYIS 444
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BLAST of mRNA_E-siliculosus-1a_F_contig11022.706.1 vs. uniprot
Match: I0Z8H1_COCSC (Uncharacterized protein n=1 Tax=Coccomyxa subellipsoidea (strain C-169) TaxID=574566 RepID=I0Z8H1_COCSC)

HSP 1 Score: 46.6 bits (109), Expect = 3.900e-5
Identity = 17/35 (48.57%), Postives = 27/35 (77.14%), Query Frame = 0 
Query:   23 YVPASGLPFSPAERLAALFRIKPKWPMAELEPYIS 57
            ++PA+ +P  PA R AALF +KP+W + +LEPY++
Sbjct:   25 HLPAAAMPTDPAARFAALFAVKPRWELPDLEPYLA 59
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BLAST of mRNA_E-siliculosus-1a_F_contig11022.706.1 vs. uniprot
Match: A0A7R9Y8B8_MICPS (Hypothetical protein n=1 Tax=Micromonas pusilla TaxID=38833 RepID=A0A7R9Y8B8_MICPS)

HSP 1 Score: 46.6 bits (109), Expect = 8.040e-5
Identity = 26/56 (46.43%), Postives = 34/56 (60.71%), Query Frame = 0 
Query:    1 QGIALVETRDGKGKDKNASPVSYVPASGLPFSPAERLAALFRIKPKWPMAELEPYI 56
            +G+ALV+   G    +NA  V    A  LP +P ER  ALF +KP+W M ELEPY+
Sbjct:   45 RGLALVDKTAGVDGSENAF-VRPFRADRLPKTPKERFHALFTLKPRWTMDELEPYV 99
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig11022.706.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5KRY8_9PHAE1.020e-2694.74Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
I0Z8H1_COCSC3.900e-548.57Uncharacterized protein n=1 Tax=Coccomyxa subellip... [more]
A0A7R9Y8B8_MICPS8.040e-546.43Hypothetical protein n=1 Tax=Micromonas pusilla Ta... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Ectocarpus siliculosus 1a female
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR019128Sister chromatid cohesion protein Dcc1PFAMPF09724Dcc1coord: 2..56
e-value: 4.8E-14
score: 52.4

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig11022contigE-siliculosus-1a_F_contig11022:148..321 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Ectocarpus siliculosus 1a female2022-09-29
Diamond blastp: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-16
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig11022.706.1mRNA_E-siliculosus-1a_F_contig11022.706.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalemRNAE-siliculosus-1a_F_contig11022 148..321 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_E-siliculosus-1a_F_contig11022.706.1 ID=prot_E-siliculosus-1a_F_contig11022.706.1|Name=mRNA_E-siliculosus-1a_F_contig11022.706.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=58bp
QGIALVETRDGKGKDKNASPVSYVPASGLPFSPAERLAALFRIKPKWPMA
ELEPYIS*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR019128Dcc1