mRNA_E-siliculosus-1a_F_contig110.694.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig110.694.1
Unique NamemRNA_E-siliculosus-1a_F_contig110.694.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig110.694.1 vs. uniprot
Match: D8LSV3_ECTSI (Nucleotid_trans domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LSV3_ECTSI)

HSP 1 Score: 697 bits (1799), Expect = 1.660e-252
Identity = 340/362 (93.92%), Postives = 351/362 (96.96%), Query Frame = 1
Query:    1 GGARTPLHSNGPTNGSLEYVMGWDWTPSARMRWYWVLACLVALLRTSVGAGGPADHRDEDKVTIQTTEWANATGTGTLPAISRHASCADIVAWLPPQSRPAVVFQVVSEAYVSVQKNFISNMELHSTFSRENMYLICLDEESVEIFGSLGIRCVRFGCMGCPVSRHHVWALRIEVSVCLLKAGIDVLMSDADAVWLRDPMDDFNSDDYRDSSIVASRGAMPVPLFRTWGATICMGFVLFRAGSNAIYKFMEVVGEFTEELENDQQAVNLALQELDVVWDPTSDMGFSDSTRSGVGVVHSITSGESLTVSLLPHNKYTRSCRRTPISIETVVAHCISTDKGAGMATWMKKAHLWNVPDDNGSN 1086
            GGARTPLHSNGPTNGSLEY MGWDWTP ARMRWYWVLACLVAL+RTSVGAGGPAD+RDEDKVTIQT EWANATGTGTL AISRHASCADIVAWLPPQ +PAVVFQVVS+AYVSVQKNFISNMELHSTFSRENMYLICLDEESVE FG+LGIRCVRFGCMGCPVSRHHVWALRIEVSVCLLKAGIDVLMSDADAVWL DPMDDF+SDDYRDSSIVASRGAMPVPLFRTWGATICMGFVLFRAGSNAIY+FMEVVGEFTEELENDQQAVNLALQ+LDVVWDPTSDM FSDSTRSGVGVV+SI SGESLTVSLLPHNKYTRSCRRTPIS+ETVVAHCISTDKG GMATWMK+AHLWNVPDDN SN
Sbjct:   42 GGARTPLHSNGPTNGSLEYAMGWDWTPCARMRWYWVLACLVALVRTSVGAGGPADNRDEDKVTIQTMEWANATGTGTLLAISRHASCADIVAWLPPQLQPAVVFQVVSKAYVSVQKNFISNMELHSTFSRENMYLICLDEESVESFGALGIRCVRFGCMGCPVSRHHVWALRIEVSVCLLKAGIDVLMSDADAVWLHDPMDDFDSDDYRDSSIVASRGAMPVPLFRTWGATICMGFVLFRAGSNAIYQFMEVVGEFTEELENDQQAVNLALQKLDVVWDPTSDMSFSDSTRSGVGVVNSIYSGESLTVSLLPHNKYTRSCRRTPISVETVVAHCISTDKGEGMATWMKEAHLWNVPDDNDSN 403          
BLAST of mRNA_E-siliculosus-1a_F_contig110.694.1 vs. uniprot
Match: D7FGV6_ECTSI (Acetyltransferase (Isoleucine patch superfamily protein) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FGV6_ECTSI)

HSP 1 Score: 456 bits (1173), Expect = 5.990e-157
Identity = 229/353 (64.87%), Postives = 272/353 (77.05%), Query Frame = 1
Query:   37 TNGSLEYVMGWDWTPSARMRWYWVLA-CLVALLRTS-VGAGGPADHRDE-DKVTIQTTEWANATGTGTLPAISRHASCADIVAWLPPQSRPAVVFQVVSEAYVSVQKNFISNMELHSTFSRENMYLICLDEESVEIFGSLGIRCVRFGCMGCPVSRHHVWALRIEVSVCLLKAGIDVLMSDADAVWLRDPMDDFNSDDYRDSSIVASRGAMPVPLFRTWGATICMGFVLFRAGSNAIYKFMEVVGEFTEELENDQQAVNLALQELDVVWDPTSDMGFSDSTRSGVGVVHSIT-SGESLTVSLLPHNKYTRSCRRTPISIETVVAHCISTDKGAGMATWMKKAHLWNVPDDNGS 1083
            T+GS    MG  WT S R+   W+L  CLV  L+TS + A GP    DE D V + T   AN T  GTLP I++ +SC+D++AWLPP+S PAVVFQVVSE Y S+++NFISNMELHSTFSREN+YL+CLDEESV IF  LGIRCVR+GC+GCPVSR  +W LRI+V++CLL AG DVLMSDADA+WLRDP DD  SD + DS++VASR  MP PL+  WGATICMGF  FRAG +A+  FM VV E   EL NDQ AVN AL +LDVVWDP SDM F+D+TR G GV+ +IT  G SL V+LLPHNKYTRSCRRTPIS +T+VAHC+S+DKG GMATWMK+AHLWN+PDDN S
Sbjct:   68 TSGSPGCPMGTGWTTSVRVLRGWLLTWCLVVCLKTSSIHAAGPDAEPDEADNVVVHTMGLANDTVAGTLPPITKDSSCSDMLAWLPPRSSPAVVFQVVSEPYASLEENFISNMELHSTFSRENLYLVCLDEESVAIFDGLGIRCVRYGCLGCPVSRGDIWVLRIDVTICLLNAGQDVLMSDADAIWLRDPTDDLASDAFLDSNVVASRAVMPFPLYHKWGATICMGFAFFRAGGSAMQAFMTVVEEIANELGNDQIAVNEALNKLDVVWDPMSDMNFTDNTRPGTGVIENITVDGGSLKVTLLPHNKYTRSCRRTPISNDTIVAHCVSSDKGEGMATWMKEAHLWNLPDDNDS 420          
BLAST of mRNA_E-siliculosus-1a_F_contig110.694.1 vs. uniprot
Match: A0A6H5KMQ8_9PHAE (Nucleotid_trans domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMQ8_9PHAE)

HSP 1 Score: 446 bits (1148), Expect = 2.740e-154
Identity = 223/345 (64.64%), Postives = 268/345 (77.68%), Query Frame = 1
Query:   61 MGWDWTPSARMRWYWVLA-CLVALLRTS-VGAGGPADHRDE-DKVTIQTTEWANATGTGTLPAISRHASCADIVAWLPPQSRPAVVFQVVSEAYVSVQKNFISNMELHSTFSRENMYLICLDEESVEIFGSLGIRCVRFGCMGCPVSRHHVWALRIEVSVCLLKAGIDVLMSDADAVWLRDPMDDFNSDDYRDSSIVASRGAMPVPLFRTWGATICMGFVLFRAGSNAIYKFMEVVGEFTEELENDQQAVNLALQELDVVWDPTSDMGFSDSTRSGVGVVHSITS-GESLTVSLLPHNKYTRSCRRTPISIETVVAHCISTDKGAGMATWMKKAHLWNVPDDNGS 1083
            MG  WT S R+   W+LA CL   L+TS   A GP    DE D V + T   AN T  GTLP I++ +SC+D++AWLPP+S PAVVFQVVSE Y S++ NFISNMELHSTFSREN+YL+CLDEESV IF  LGIRCVR+GC+GCP+SR  VW LR+E ++CLL AG DVLMSDADA+WLRDP +DF SD   DS++VASR  MP PL+  WGAT+CMGF  FRAG +A+  FM VVGE   EL +DQ+AVN AL +L VVWDPTSDM F++STR G GV+ +IT+ G+ L V+LLPHNKYTRSCRRTPIS +T+VAHC+S+DKG GMATWMK+AHLWN+PDDN S
Sbjct:    1 MGTGWTTSVRVLRGWILAWCLAVCLKTSSTRAAGPNAEPDEADIVVVHTMGLANDTVAGTLPPITKDSSCSDMLAWLPPRSSPAVVFQVVSEPYASLEANFISNMELHSTFSRENLYLVCLDEESVAIFDGLGIRCVRYGCLGCPMSRLDVWVLRVEATLCLLNAGQDVLMSDADAIWLRDPTNDFASDLNMDSNVVASRAVMPFPLYHKWGATVCMGFAFFRAGGSAMQAFMTVVGEIVNELGDDQKAVNEALDKLGVVWDPTSDMDFTNSTRPGTGVIENITANGDPLKVTLLPHNKYTRSCRRTPISNDTIVAHCVSSDKGEGMATWMKEAHLWNLPDDNDS 345          
BLAST of mRNA_E-siliculosus-1a_F_contig110.694.1 vs. uniprot
Match: A0A6H5LI82_9PHAE (Nucleotid_trans domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5LI82_9PHAE)

HSP 1 Score: 252 bits (643), Expect = 3.050e-78
Identity = 132/280 (47.14%), Postives = 181/280 (64.64%), Query Frame = 1
Query:  232 LPAISRHASCADIVAWLPPQSRPAVVFQVVSEAYVSVQKNFISNMELHSTFSRENMYLICLDEESVEIF-GSLGIRCVRFGCMGCPVSRHHVWALRIEVSVCLLKAGIDVLMSDADAVWLRDPMDDFNSDDYRDSSIVASRGAMPVPLFRTWGATICMGFVLFRA-GSNAIYKFMEVVGEFTEELENDQQAVNLALQELDVVWDPTSDMGFSDSTRSGVGVVHSIT--SGESLTVSLLPHNKYTRSCRRTPISIETVVAHCISTDKGAGMATWMKKAHLW 1059
            LPAI+  A+CAD + W+PP+S PA+V QVVS  Y+ +++NFI  MEL+S  +R+++YL+C+D  SV  F  S+ IRC+       P S   +W LR  V  CL++AG DV+MSDADA+WL DP  DFN     DSS+VASRG  P PL   WGAT+CMGFVLFRA G   + +F+EV+     + ++DQ +VNLA + L +VWD  SDM + +S   G G + ++   + +  +V+LLPHN YTR C  TPIS +TVVAHC +         WM ++ LW
Sbjct:   35 LPAITPKATCADWMKWIPPRSDPAIVMQVVSRHYLELERNFIRLMELNSALTRDHLYLMCMDNVSVHFFESSMNIRCIPLTAFDFP-SHAEIWVLRARVVSCLVEAGQDVIMSDADALWLDDPFKDFNLPRVIDSSVVASRGKFPKPLGLEWGATMCMGFVLFRATGRRVVGEFLEVMDALVHKNKDDQISVNLAAENLGIVWDQESDMRYVESDSFGFGTIDTLVDENNQPFSVTLLPHNAYTRVCDETPISNKTVVAHCWAPKTADSKTGWMVQSKLW 313          
BLAST of mRNA_E-siliculosus-1a_F_contig110.694.1 vs. uniprot
Match: D8LK17_ECTSI (Nucleotid_trans domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LK17_ECTSI)

HSP 1 Score: 248 bits (632), Expect = 2.780e-76
Identity = 139/318 (43.71%), Postives = 198/318 (62.26%), Query Frame = 1
Query:  229 TLPAISRHASCADIVAWLPPQSRPAVVFQVVSEAYVSVQKNFISNMELHSTFSRENMYLICLDEESVEIFGS-LGIRCVRFGCMGCPVSRHHVWALRIEVSVCLLKAG-IDVLMSDADAVWLRDPMDD-FNSDDYRDSSIVASRGAMPVPLFRTWGATICMGFVLFRAGSNA-IYKFMEVVGEFTEELENDQQAVNLALQELDVVWDPTSDMGFSDSTRSGVGVVHSITSGESLT------------------------------VSLLPHNKYTRSC-RRTPISIETVVAHCISTDKGAGMAT-WMKKAHLWNVPDD 1074
            TLPAI++ A+C D  AW+PP+SRPAVV QVVSE Y+ +++NFI  ME +S F+R N+YL+C+D+ S   F + +GIRCV    +  P +  H+W LR+ V  CLL+ G +DV+MSDADA+WL DP  D F+  D     IVASRG+ P   ++ WG+T+CMGF+LFRA + A + +F++V+ +   + ++DQ +VN A ++L +VWD  SDM + +ST  G G++  + +  + T                              V+LLPH+ YTR C RRT  +  TVVAHC    K AG+ T WMKKA+LW+V DD
Sbjct:   26 TLPAITKDATCVDWAAWIPPRSRPAVVMQVVSEGYIDIERNFIRLMERNSGFTRRNIYLMCMDDASKNFFDTKMGIRCVPMSALDLP-THEHIWQLRVRVVSCLLEIGNVDVIMSDADALWLADPAKDLFSRGDGGRGDIVASRGSWPNDQWKEWGSTLCMGFILFRARNVAGMKRFLDVMADLVVQNKDDQISVNRAAKQLGIVWDKNSDMRYEESTGYGRGIIAGLGTSNNSTSGGGGDLFIGQTGHGVVVGRGTREVEAPFRVTLLPHSAYTRLCGRRTLSNQTTVVAHCYFPQKEAGVKTSWMKKANLWSVQDD 342          
BLAST of mRNA_E-siliculosus-1a_F_contig110.694.1 vs. uniprot
Match: D7G4E2_ECTSI (Nucleotid_trans domain-containing protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4E2_ECTSI)

HSP 1 Score: 161 bits (407), Expect = 6.920e-44
Identity = 88/184 (47.83%), Postives = 123/184 (66.85%), Query Frame = 1
Query:  538 LKAGIDVLMSDADAVWLRDPMDDFNSDDYRDSSIVASRGAMPVPLFRTWGATICMGFVLFRAGSN--AIYKFMEVVGEFTEELENDQQAVNLALQELDVVWDPT-SDMGFSDSTRSGVGVVHSITSGES--LTVSLLPHNKYTRSCRRTPISIETVVAHCISTDKGAGMATWMKKAHLWNVPDD 1074
            ++AG DV+MSDADA+WL DPM DF+      SSIVASRG+ P  +   WGATICMGF+LFR  ++  A+ +F+ V+     E ++DQ AVN+A ++L +VW+   SDM +++ST  GVG + S++  ++   TV+LLPH+ YTR C  TP+S  TVVAHCIS+      A WM +  LW V +D
Sbjct:   64 VEAGHDVMMSDADALWLADPMKDFSLPGVVGSSIVASRGSFPGEVGHVWGATICMGFILFRTTASRVAMREFVTVMNALVLEEKDDQIAVNIAARDLGIVWNQEDSDMRYTESTGFGVGFIDSLSDDDNQPFTVTLLPHSAYTRICASTPVSNTTVVAHCISSKTPQSKADWMHRMDLWAVDED 247          
BLAST of mRNA_E-siliculosus-1a_F_contig110.694.1 vs. uniprot
Match: D7FQM0_ECTSI (Nucleotid_trans domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQM0_ECTSI)

HSP 1 Score: 137 bits (346), Expect = 5.110e-36
Identity = 75/150 (50.00%), Postives = 102/150 (68.00%), Query Frame = 1
Query:  364 MELHSTFSRENMYLICLDEESVEIFGS-LGIRCVRFGCMGCPVSRHH-VWALRIEVSVCLLKAGIDVLMSDADAVWLRDPMDDFNSDDYRDSSIVASRGAMPVPLFRTWGATICMGFVLFRAGSN--AIYKFMEVVGEFTEELENDQQAV 801
            MEL ++F+R ++YL+CLD++S+  F S +GI C+     G  +S H  +W LR+ V  CL +AG DV+MSDADA+WL DPM DF+     DSSIVASRG  P  + + WGAT+CMGF+LFRA +N  A+ KF+ V+     E E+DQ AV
Sbjct:    1 MELRTSFTRNHLYLMCLDDDSLHFFESFMGIHCIPLS--GLNISSHEQIWVLRVRVVSCLAEAGHDVIMSDADALWLADPMKDFSLPGVIDSSIVASRGKKPKEVGKVWGATMCMGFILFRATANRTAMGKFVTVMNALVFESEDDQIAV 148          
BLAST of mRNA_E-siliculosus-1a_F_contig110.694.1 vs. uniprot
Match: A0A6H5JTX9_9PHAE (Nucleotid_trans domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTX9_9PHAE)

HSP 1 Score: 135 bits (339), Expect = 6.510e-33
Identity = 86/259 (33.20%), Postives = 133/259 (51.35%), Query Frame = 1
Query:  316 VVSEAYVSVQKNFISNMELHSTFSRENMYLICLDEESVEIFGS-LGIRCVRFGCMGCPVSRHHVWALRIEVSVCLLKAG-IDVLMSDADAVWLRDPMDD-FNSDDYRDSSIVASRGAMPVPLFRTWGATICMGFVLFRAGSNA-IYKFMEVVGEFTEELENDQQ-----------------------------------------------------AVNLALQELDVVWDPTSDMGFSDSTRSGVGVVHSITSGESLT 921
            VVSE Y+ +++NFI  ME +S F+R N+YL+C+D  S   F + +GIRCV    +  P +   +W LR++V  CLL+ G +DV+MSDADA+WL DP  D F+        I+ASRG+ P    + WG+T+CMGF++FRA + A + +F++V+ +   + ++DQ                                                      +VN A ++L +VWD  SDM + +ST  G GV+  + S  + T
Sbjct:    5 VVSEGYIDIERNFIRLMERNSGFTRSNIYLMCMDGASKNFFDAKMGIRCVPMSALDLP-THQDIWQLRVKVVSCLLEVGHVDVIMSDADALWLADPAKDLFSRGGGGRGDIIASRGSWPNEQSKEWGSTLCMGFIVFRARNVAGMKRFLDVMADLVVQNKDDQMLCECATGVENDFCGFPASSRPRSNPTLTESAFCVAAPSPNASLILSIVSVEKISVNRAAKQLGIVWDKNSDMRYEESTGYGRGVIAGLGSSNNST 262          
BLAST of mRNA_E-siliculosus-1a_F_contig110.694.1 vs. uniprot
Match: A0A7S0SXH7_9STRA (Hypothetical protein (Fragment) n=2 Tax=Chromulina nebulosa TaxID=96789 RepID=A0A7S0SXH7_9STRA)

HSP 1 Score: 84.0 bits (206), Expect = 8.220e-15
Identity = 57/198 (28.79%), Postives = 99/198 (50.00%), Query Frame = 1
Query:  403 LICLDEESVEIFGSLGIRCVRFGCMGCPVS------RHHVWALRIEVSVCLLK-AGIDVLMSDADAVWLRDPMDDFNSDDYRDSSIVASRGAMPVPLFRTWGATICMGFVLFRAGSNAIYKFMEVVGEFTEELEN-----DQQAVNLALQELDVVWDPTSDMGFSDSTRSGVGVVHSITSGESLTVSLLPHNKYTRSC 960
            +IC+D+ S      +G+ CV         S      +H++W  RIE+   L+     DV+++D D++W+  P++D +      SSIV+SR   P  L+  WGAT+CMGF+ F+A   + Y   ++    ++ + N     DQ   N  L +  + W     M   ++  + +G +    +  S +++LLPH KY R+C
Sbjct:    1 IICIDDSSFNQLLDIGLYCVLSNNFVSDKSFNKNDYKHNIWLRRIEILSHLINNENQDVILTDLDSLWINSPLNDISIHS-ASSSIVSSRAWWPHELWSVWGATLCMGFIYFKADEFSKYFVNKIYLTMSDNINNYRKVDDQITANEELYKNQIEWFDKP-MSVGNNAIANIGSISY--NNMSYSITLLPHYKYIRNC 194          
BLAST of mRNA_E-siliculosus-1a_F_contig110.694.1 vs. uniprot
Match: A0A7S2LCA9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2LCA9_9STRA)

HSP 1 Score: 71.6 bits (174), Expect = 6.510e-10
Identity = 57/190 (30.00%), Postives = 91/190 (47.89%), Query Frame = 1
Query:  496 HHVWALRIEVSVCLLKA--GIDVLMSDADAVWLRDPMDDFNSDDYRDSSIVASRGAMP--VPL---------FRTWGATICMGFVLFRAGSNAIYKFMEVVGEFTEELENDQQ-----AVNLALQELDVVW--DPTSDMGFSDSTRSGVGVVHSITSGESLTVSLLPHNKYTRSCRRTPISIE-TVVAHC 1002
            + +W LR+ +   ++     ++VL +DADA+WL+DP+  +N   ++ S+IVASRG  P   PL               TIC GF  FR  S  +++  + +        ND Q      +NL     D +   DP+S   F+   +S +          ++ VS+LP+ + TR C R    +E +VVAHC
Sbjct:  126 NKLWVLRLHIMQRIINTFPNLNVLYTDADAIWLKDPVQLYNHPQHQSSNIVASRGTYPEWCPLAMELHDDEKMHLNTVTICFGFTYFR-NSPDLHQLAQNLQNAVARYRNDDQIAINCVLNLQYDSNDDLHMNDPSSIAAFTQPDKSVIRSFFGKVIAHNIKVSILPYEQVTRRCGRDEGMLENSVVAHC 314          
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig110.694.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 14
Match NameE-valueIdentityDescription
D8LSV3_ECTSI1.660e-25293.92Nucleotid_trans domain-containing protein n=2 Tax=... [more]
D7FGV6_ECTSI5.990e-15764.87Acetyltransferase (Isoleucine patch superfamily pr... [more]
A0A6H5KMQ8_9PHAE2.740e-15464.64Nucleotid_trans domain-containing protein n=2 Tax=... [more]
A0A6H5LI82_9PHAE3.050e-7847.14Nucleotid_trans domain-containing protein n=2 Tax=... [more]
D8LK17_ECTSI2.780e-7643.71Nucleotid_trans domain-containing protein n=1 Tax=... [more]
D7G4E2_ECTSI6.920e-4447.83Nucleotid_trans domain-containing protein n=2 Tax=... [more]
D7FQM0_ECTSI5.110e-3650.00Nucleotid_trans domain-containing protein n=1 Tax=... [more]
A0A6H5JTX9_9PHAE6.510e-3333.20Nucleotid_trans domain-containing protein n=1 Tax=... [more]
A0A7S0SXH7_9STRA8.220e-1528.79Hypothetical protein (Fragment) n=2 Tax=Chromulina... [more]
A0A7S2LCA9_9STRA6.510e-1030.00Hypothetical protein (Fragment) n=1 Tax=Skeletonem... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig110contigE-siliculosus-1a_F_contig110:84011..85099 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start0
Stop1
Cds size1089
Model size1089
Exons1
Ec32 orthologEc-26_001550.1
Ec32 ortholog descriptionNucleotide-diphospho-sugar transferase
Hectar predicted targeting categoryother localisation
Best eggNOG OGNA|NA|NA
Best tax levelEukaryota
COG Functional cat.S
EggNOG OGs2C6NG@1,2SGR5@2759
EggNOG free text desc.Nucleotide-diphospho-sugar transferase
Seed eggNOG ortholog2880.D8LSV3
Seed ortholog evalue3.3e-200
Seed ortholog score704.1
Taxonomic scopeEukaryota
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927604.5206397-CDS-E-siliculosus-1a_F_contig110:84010..850991622927604.5206397-CDS-E-siliculosus-1a_F_contig110:84010..85099Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig110 84011..85099 -
1696318607.4916286-CDS-E-siliculosus-1a_F_contig110:84010..850991696318607.4916286-CDS-E-siliculosus-1a_F_contig110:84010..85099Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig110 84011..85099 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig110.694.1prot_E-siliculosus-1a_F_contig110.694.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig110 84011..85099 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig110.694.1

>prot_E-siliculosus-1a_F_contig110.694.1 ID=prot_E-siliculosus-1a_F_contig110.694.1|Name=mRNA_E-siliculosus-1a_F_contig110.694.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=363bp
GGARTPLHSNGPTNGSLEYVMGWDWTPSARMRWYWVLACLVALLRTSVGA
GGPADHRDEDKVTIQTTEWANATGTGTLPAISRHASCADIVAWLPPQSRP
AVVFQVVSEAYVSVQKNFISNMELHSTFSRENMYLICLDEESVEIFGSLG
IRCVRFGCMGCPVSRHHVWALRIEVSVCLLKAGIDVLMSDADAVWLRDPM
DDFNSDDYRDSSIVASRGAMPVPLFRTWGATICMGFVLFRAGSNAIYKFM
EVVGEFTEELENDQQAVNLALQELDVVWDPTSDMGFSDSTRSGVGVVHSI
TSGESLTVSLLPHNKYTRSCRRTPISIETVVAHCISTDKGAGMATWMKKA
HLWNVPDDNGSN*
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mRNA from alignment at E-siliculosus-1a_F_contig110:84011..85099-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig110.694.1 ID=mRNA_E-siliculosus-1a_F_contig110.694.1|Name=mRNA_E-siliculosus-1a_F_contig110.694.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=1089bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig110:84011..85099- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
GGTGGAGCAAGAACTCCGCTACATTCGAACGGTCCGACAAACGGGTCGCT AGAGTACGTCATGGGATGGGATTGGACCCCAAGCGCTCGAATGCGGTGGT ATTGGGTGCTTGCTTGTTTGGTGGCGCTTCTGAGGACATCCGTGGGTGCC GGCGGCCCGGCCGATCACCGTGACGAGGACAAAGTTACCATCCAAACAAC GGAGTGGGCCAACGCCACGGGTACGGGAACCCTTCCAGCAATATCAAGGC ATGCGTCTTGCGCCGATATTGTTGCTTGGTTGCCTCCCCAATCACGACCG GCGGTGGTGTTCCAGGTTGTGTCCGAAGCTTATGTCAGCGTGCAAAAGAA TTTTATTTCGAACATGGAGCTGCATTCGACTTTTTCCCGAGAAAACATGT ACCTAATTTGTCTAGACGAGGAATCTGTAGAGATTTTCGGGTCTCTGGGG ATACGGTGCGTTCGCTTTGGCTGCATGGGTTGCCCAGTGTCACGCCACCA CGTATGGGCGTTGAGGATTGAAGTCAGCGTATGTCTTTTGAAAGCTGGCA TAGATGTTTTGATGTCGGACGCTGACGCAGTTTGGCTCCGCGACCCGATG GATGACTTCAACTCTGATGATTATAGGGATAGCAGCATTGTCGCTTCGAG GGGCGCAATGCCGGTTCCCCTGTTCCGCACGTGGGGGGCGACCATTTGTA TGGGCTTTGTCTTGTTCCGCGCTGGGAGCAACGCAATTTATAAATTCATG GAGGTCGTGGGAGAGTTCACGGAAGAATTGGAGAATGATCAACAGGCGGT GAACCTAGCGTTGCAAGAGCTCGACGTCGTGTGGGACCCAACGAGTGATA TGGGTTTCTCCGACAGCACACGGTCAGGGGTGGGGGTGGTACATAGCATC ACTAGTGGGGAATCGTTGACAGTGTCTCTTCTGCCGCACAACAAGTACAC ACGAAGCTGCCGGCGAACACCAATTTCCATCGAGACTGTTGTGGCCCACT GTATCAGCACTGACAAAGGAGCAGGGATGGCTACATGGATGAAGAAGGCA CACCTGTGGAACGTTCCAGACGACAACGGCAGCAACTGA
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig110:84011..85099-

>mRNA_E-siliculosus-1a_F_contig110.694.1 ID=mRNA_E-siliculosus-1a_F_contig110.694.1|Name=mRNA_E-siliculosus-1a_F_contig110.694.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=2178bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig110:84011..85099- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
GGTGGAGCAAGAACTCCGCTACATTCGAACGGTCCGACAAACGGGTCGCT
AGAGTACGTCATGGGATGGGATTGGACCCCAAGCGCTCGAATGCGGTGGT
ATTGGGTGCTTGCTTGTTTGGTGGCGCTTCTGAGGACATCCGTGGGTGCC
GGCGGCCCGGCCGATCACCGTGACGAGGACAAAGTTACCATCCAAACAAC
GGAGTGGGCCAACGCCACGGGTACGGGAACCCTTCCAGCAATATCAAGGC
ATGCGTCTTGCGCCGATATTGTTGCTTGGTTGCCTCCCCAATCACGACCG
GCGGTGGTGTTCCAGGTTGTGTCCGAAGCTTATGTCAGCGTGCAAAAGAA
TTTTATTTCGAACATGGAGCTGCATTCGACTTTTTCCCGAGAAAACATGT
ACCTAATTTGTCTAGACGAGGAATCTGTAGAGATTTTCGGGTCTCTGGGG
ATACGGTGCGTTCGCTTTGGCTGCATGGGTTGCCCAGTGTCACGCCACCA
CGTATGGGCGTTGAGGATTGAAGTCAGCGTATGTCTTTTGAAAGCTGGCA
TAGATGTTTTGATGTCGGACGCTGACGCAGTTTGGCTCCGCGACCCGATG
GATGACTTCAACTCTGATGATTATAGGGATAGCAGCATTGTCGCTTCGAG
GGGCGCAATGCCGGTTCCCCTGTTCCGCACGTGGGGGGCGACCATTTGTA
TGGGCTTTGTCTTGTTCCGCGCTGGGAGCAACGCAATTTATAAATTCATG
GAGGTCGTGGGAGAGTTCACGGAAGAATTGGAGAATGATCAACAGGCGGT
GAACCTAGCGTTGCAAGAGCTCGACGTCGTGTGGGACCCAACGAGTGATA
TGGGTTTCTCCGACAGCACACGGTCAGGGGTGGGGGTGGTACATAGCATC
ACTAGTGGGGAATCGTTGACAGTGTCTCTTCTGCCGCACAACAAGTACAC
ACGAAGCTGCCGGCGAACACCAATTTCCATCGAGACTGTTGTGGCCCACT
GTATCAGCACTGACAAAGGAGCAGGGATGGCTACATGGATGAAGAAGGCA
CACCTGTGGAACGTTCCAGACGACAACGGCAGCAACTGAGGTGGAGCAAG
AACTCCGCTACATTCGAACGGTCCGACAAACGGGTCGCTAGAGTACGTCA
TGGGATGGGATTGGACCCCAAGCGCTCGAATGCGGTGGTATTGGGTGCTT
GCTTGTTTGGTGGCGCTTCTGAGGACATCCGTGGGTGCCGGCGGCCCGGC
CGATCACCGTGACGAGGACAAAGTTACCATCCAAACAACGGAGTGGGCCA
ACGCCACGGGTACGGGAACCCTTCCAGCAATATCAAGGCATGCGTCTTGC
GCCGATATTGTTGCTTGGTTGCCTCCCCAATCACGACCGGCGGTGGTGTT
CCAGGTTGTGTCCGAAGCTTATGTCAGCGTGCAAAAGAATTTTATTTCGA
ACATGGAGCTGCATTCGACTTTTTCCCGAGAAAACATGTACCTAATTTGT
CTAGACGAGGAATCTGTAGAGATTTTCGGGTCTCTGGGGATACGGTGCGT
TCGCTTTGGCTGCATGGGTTGCCCAGTGTCACGCCACCACGTATGGGCGT
TGAGGATTGAAGTCAGCGTATGTCTTTTGAAAGCTGGCATAGATGTTTTG
ATGTCGGACGCTGACGCAGTTTGGCTCCGCGACCCGATGGATGACTTCAA
CTCTGATGATTATAGGGATAGCAGCATTGTCGCTTCGAGGGGCGCAATGC
CGGTTCCCCTGTTCCGCACGTGGGGGGCGACCATTTGTATGGGCTTTGTC
TTGTTCCGCGCTGGGAGCAACGCAATTTATAAATTCATGGAGGTCGTGGG
AGAGTTCACGGAAGAATTGGAGAATGATCAACAGGCGGTGAACCTAGCGT
TGCAAGAGCTCGACGTCGTGTGGGACCCAACGAGTGATATGGGTTTCTCC
GACAGCACACGGTCAGGGGTGGGGGTGGTACATAGCATCACTAGTGGGGA
ATCGTTGACAGTGTCTCTTCTGCCGCACAACAAGTACACACGAAGCTGCC
GGCGAACACCAATTTCCATCGAGACTGTTGTGGCCCACTGTATCAGCACT
GACAAAGGAGCAGGGATGGCTACATGGATGAAGAAGGCACACCTGTGGAA
CGTTCCAGACGACAACGGCAGCAACTGA
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