mRNA_E-siliculosus-1a_F_contig110.689.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig110.689.1 vs. uniprot
Match: A0A6H5JZR3_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZR3_9PHAE) HSP 1 Score: 578 bits (1490), Expect = 1.600e-200 Identity = 275/282 (97.52%), Postives = 279/282 (98.94%), Query Frame = 1
Query: 703 SGTTWLGRVVPALALELCGSFNNQWCQVGGMTIIPHPPASLHEFELLKRNIDGSGSPELFLHFKGIHKHVIPGMDLGVPVSCRNGGRLHRDYFLDLQPCASDEMPTRDQLVSCLYDTSPSCVRHMPSADPAVRRSIVIMRDPRNVVISEYMMRTQVIERERWTRKFSLDEFIMWKFEVLVSWIHQRYMWHTGTLMGPSSHITVYEELQKSHLGLIDIAGFMGLQCSEQQAAKVWIGRRHPSPNGGYASRGLSVETVSFMNATMARLLPPALALRWDVTPTEL 1548
SGTTWLGRVVPALALELCGSFNNQWCQVGGMTIIPHPPASLHEFELLKRNI GSGSPELFLHFKGIHKH+IPGMDLGVPVSCRNGGRLHRDYFLDLQPCASDEMPTRD+LVSCLYDTS SCVRHMPSADPAVRRSIVIMRDPRNVVISEYMMRTQVIERERWTR FSLDEFIMWKFEVLVSWIHQRYMWHTGTLMGPSSHITVYEELQ+SHLGLIDIAGFMGLQCSEQQAAKVWIGRRHPSP+GGYASRGLSVETVSFMNATMARLLPPALALRWDVTPTEL
Sbjct: 17 SGTTWLGRVVPALALELCGSFNNQWCQVGGMTIIPHPPASLHEFELLKRNIGGSGSPELFLHFKGIHKHIIPGMDLGVPVSCRNGGRLHRDYFLDLQPCASDEMPTRDRLVSCLYDTSASCVRHMPSADPAVRRSIVIMRDPRNVVISEYMMRTQVIERERWTRTFSLDEFIMWKFEVLVSWIHQRYMWHTGTLMGPSSHITVYEELQRSHLGLIDIAGFMGLQCSEQQAAKVWIGRRHPSPSGGYASRGLSVETVSFMNATMARLLPPALALRWDVTPTEL 298
BLAST of mRNA_E-siliculosus-1a_F_contig110.689.1 vs. uniprot
Match: A0A6H5L183_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L183_9PHAE) HSP 1 Score: 464 bits (1194), Expect = 2.860e-154 Identity = 232/400 (58.00%), Postives = 291/400 (72.75%), Query Frame = 1
Query: 358 RSRVAGHAMGTFFQRLI-ACVATACISVDSSSSRLFAEAQVEVLPDPRTENSDGRSQSRRTSTLPLSTL--SGVNRALQHAPDEANSIEPIAKSFMQDPDGFGKPGQGISLDALGEPKSGTTWLGRVVPALALELCGSFNNQWCQVGGMTIIPHPPASLHEFELLKRNIDGSGSPELFLHFKGIHKHVIPGMDLGVPVSCRNGGRLHRDYFLDLQPCASDEMPTRDQLVSCLYDTSPSCVRHMPSADPAVRRSIVIMRDPRNVVISEYMMRTQVIERERWTRKFSLDEFIMWKFEVLVSWIHQRYMWHTGTLMGPSSHITVYEELQKSHLGLIDIAGFMGLQCSEQQAAKVWIGRRHPSPNGGYASRGLSVETVSFMNATMARLLPPALALRWDVTPTEL 1548
R R +AMGT +RL+ CVATAC DSS R+ E + E +P R N R +R L ++ N + P+EA+SI+P+A F Q PD FG+ G G+SL ALGEPKSGTTWLGR+VP+LA+ELCGS NN WCQ+GG+ + PHPPA +EFELL + +G P LFLHF+G KH+IPGMDLG+P+ CRNGGRLH++ F+DLQPC S E PTR++L SCL++T+ CV +M S DPAVRRSIV+ RDPR+VVISEY MRTQV R+ W SL+EF+ +KFEVLVSW+HQRYMWHTG LMGPSSH+ Y+ELQKS +G + IA MGL+CSE QA KVW + SPNGG+A+R L T+ FMNATMARLLPP++A++W +TPTEL
Sbjct: 5 RVRRPPYAMGTILRRLVLVCVATACTGRDSSDPRV-PETEAEAMPGRRM-NHPARIHARNAKILAQQSVLRDQANITAEPVPEEADSIKPVAIPFKQKPDEFGERGHGLSLVALGEPKSGTTWLGRMVPSLAIELCGSENNPWCQLGGVEVFPHPPAPSYEFELLNISTP-TGRPRLFLHFQGRIKHIIPGMDLGIPLKCRNGGRLHKEGFMDLQPCDSGESPTRERLESCLWNTTKRCVNYMTSTDPAVRRSIVLFRDPRDVVISEYKMRTQVFHRDPWIASLSLEEFVQFKFEVLVSWLHQRYMWHTGDLMGPSSHVEFYDELQKSPVGFVGIARLMGLECSEDQAYKVWKAHKQASPNGGFATR-LGEATIQFMNATMARLLPPSVAIQWGLTPTEL 400
BLAST of mRNA_E-siliculosus-1a_F_contig110.689.1 vs. uniprot
Match: A0A6H5L6E2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6E2_9PHAE) HSP 1 Score: 355 bits (912), Expect = 2.190e-111 Identity = 172/324 (53.09%), Postives = 225/324 (69.44%), Query Frame = 1
Query: 586 HAPD--EANSIEPIAKSFMQDPDGFGKPGQGISLDALGEPKSGTTWLGRVVPALALELCGSFNNQWCQVGGMTIIPHPPASLHEFELLKRNIDGSGSPELFLHFKGIHKHVIPGMDLGVPVSCRNGGRLHRDYFLDLQPCASDE-MPTRDQLVSCLYDTSPSCVRHMPSADPAVRRSIVIMRDPRNVVISEYMMRTQVIERERWTRKFSLDEFIMWKFEVLVSWIHQRYMWHTGTLMGPSSHITVYEELQKSHLGLIDIAGFMGLQCSEQQAAKVWIGRRHPSPNGGYASRGLSVETVSFMNATMARLLPPALALRWDVTPTEL 1548
H PD E +SI+PI F+Q+P G+ PG GIS+DA GEPKSGTTWLGR+VP LAL LCG+ NN WC +GG+ ++ + PA + FE++ + +G LFLHF G KH IPGM C NGGR H +YF D PC +E PTR++L +CL++TS CV++M S DP VRRS+VI+RDPR+V +SE MR + W RK + D F +FE+LVSW HQRY+WHT T+M PSSH+ YE+L+ H G I +A FMGL CSE+ A +VW R+P+P+G Y++ GL +ET+ +MN TMARLLPP+LA RW VTPT+L
Sbjct: 130 HQPDLPEKSSIQPIDIPFLQEPGGWQLPGNGISMDATGEPKSGTTWLGRLVPDLALHLCGNANNSWCGMGGLAVLDNLPAPKYVFEMVNKT---AGEGALFLHFDGNGKHYIPGMKGEPHPGCDNGGRPHENYFGDTPPCLDEEETPTRERLRACLFNTSALCVQYMASVDPDVRRSMVIIRDPRDVAMSEREMRIKYYREPAWIRKTTPDVFARKRFEILVSWTHQRYLWHTETVMAPSSHVVFYEDLKDHHHGFIGMADFMGLACSEEDALEVWRAHRNPAPHGDYSTHGLQLETIQWMNETMARLLPPSLAFRWGVTPTDL 450
BLAST of mRNA_E-siliculosus-1a_F_contig110.689.1 vs. uniprot
Match: D7FXT7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXT7_ECTSI) HSP 1 Score: 352 bits (902), Expect = 7.950e-111 Identity = 172/324 (53.09%), Postives = 224/324 (69.14%), Query Frame = 1
Query: 586 HAPD--EANSIEPIAKSFMQDPDGFGKPGQGISLDALGEPKSGTTWLGRVVPALALELCGSFNNQWCQVGGMTIIPHPPASLHEFELLKRNIDGSGSPELFLHFKGIHKHVIPGMDLGVPVSCRNGGRLHRDYFLDLQPCASDE-MPTRDQLVSCLYDTSPSCVRHMPSADPAVRRSIVIMRDPRNVVISEYMMRTQVIERERWTRKFSLDEFIMWKFEVLVSWIHQRYMWHTGTLMGPSSHITVYEELQKSHLGLIDIAGFMGLQCSEQQAAKVWIGRRHPSPNGGYASRGLSVETVSFMNATMARLLPPALALRWDVTPTEL 1548
H P+ E +SI+ I +Q+P G+ PG GIS+DA GEPKSGTTWLGR+VP LAL LCG+ NN WC +GG+ ++ + PA + FE++ + +G LFLHF G KH IPGM C NGGR H +YF D PC +E PTR++L +CL++TS CV++MPS DP VRRS+VI+RDPR+V +SE MR + W RK + D F +FE+LVSW HQRY+WHT T+M PSSH+ YE+L+ H G I +A FMGL CSE+ A +VW R+P+P+G Y++ GL ETV +MN TMARLLPP+LALRW VTPT+L
Sbjct: 64 HQPELPEMSSIQLIDTPLLQEPGGWQLPGNGISMDATGEPKSGTTWLGRLVPDLALHLCGNANNSWCGMGGLVVLDNIPAPKYVFEMVNKT---AGEGALFLHFDGNGKHYIPGMKGEPHPGCDNGGRPHENYFGDTPPCLDEEDTPTRERLRACLFNTSALCVQYMPSVDPDVRRSMVIIRDPRDVAMSEREMRMKYYRDPAWIRKATPDVFARKRFEILVSWTHQRYLWHTETVMAPSSHVVFYEDLKDHHHGFIGMADFMGLTCSEEDALEVWRAHRNPAPHGDYSTHGLKQETVQWMNETMARLLPPSLALRWGVTPTDL 384
BLAST of mRNA_E-siliculosus-1a_F_contig110.689.1 vs. uniprot
Match: D8LSW1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSW1_ECTSI) HSP 1 Score: 337 bits (864), Expect = 1.400e-108 Identity = 157/158 (99.37%), Postives = 158/158 (100.00%), Query Frame = 1
Query: 634 MQDPDGFGKPGQGISLDALGEPKSGTTWLGRVVPALALELCGSFNNQWCQVGGMTIIPHPPASLHEFELLKRNIDGSGSPELFLHFKGIHKHVIPGMDLGVPVSCRNGGRLHRDYFLDLQPCASDEMPTRDQLVSCLYDTSPSCVRHMPSADPAVRRS 1107
MQDPDGFGKPGQGISLDALGEPKSGTTWLGRVVPALALELCGSFNNQWCQVGGMTIIPHPPASLHEFELLKRNIDGSGSPELFLHFKGIHKHVIPGMDLGVPVSCRNGGRLHRDYFLDLQPCASDEMPTRD+LVSCLYDTSPSCVRHMPSADPAVRRS
Sbjct: 1 MQDPDGFGKPGQGISLDALGEPKSGTTWLGRVVPALALELCGSFNNQWCQVGGMTIIPHPPASLHEFELLKRNIDGSGSPELFLHFKGIHKHVIPGMDLGVPVSCRNGGRLHRDYFLDLQPCASDEMPTRDRLVSCLYDTSPSCVRHMPSADPAVRRS 158
BLAST of mRNA_E-siliculosus-1a_F_contig110.689.1 vs. uniprot
Match: A0A6H5JLX3_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JLX3_9PHAE) HSP 1 Score: 266 bits (681), Expect = 1.730e-79 Identity = 132/302 (43.71%), Postives = 183/302 (60.60%), Query Frame = 1
Query: 730 VPALALELCGSFNNQWCQVGGMTIIPHPPASLHEFELLKRNIDGSGSPELFLHFKGIHKHVIPGMDL-GVPVSCRNGGRLHRDYFLDLQPCASDEMPTRDQLVSCLYDTSPSCVRHMPSADPAVRRSIVIMRDPRNVVISEYMMRTQVIERERWTRKFSLDEFIMWKFEVLVSWIHQRYMWHTGTLMGPSSHITVYEELQ-----------------------------KSHLGLIDIAGFMGLQCSEQQAAKVWIGRRHPSPNGGYASRGLSVETVSFMNATMARLLPPALALRWDVTPTE 1545
+P LALELCGS N WC++GG+ + P P+ +EFELLKR P LFLH+KG +KHVIPGM G P C GGR HR++F D PC S TR+QL CL++TS C+ +PS RR+ V++RDPR+VV+SE+ MR +E S+D+FI +F+ +VSW HQR++WHT T++ SSH+ Y++LQ + +G+ID+A FMGL+CSE QA VW ++ P+G Y + GL + T+ +MNATMA LLP A++L W +TPT+
Sbjct: 1 MPQLALELCGSSTNTWCEMGGLAVYPSEPSPWYEFELLKRGTGEGSGPTLFLHYKGSNKHVIPGMSWKGHPEGCNQGGRRHRNFFEDYPPCISGPASTREQLTGCLWNTSSRCMGFVPSES---RRTAVMLRDPRDVVLSEFRMRRDYYHQEE-VMAISVDDFIWDRFQTIVSWTHQRWVWHTETVLSESSHVMFYDDLQIFSACCCISNLSAPVRGARRLFYTQSSLKANPMGMIDLAAFMGLECSEDQARNVWESHQNAIPHGDYTTHGLQLGTIEWMNATMASLLPTAVSLHWGLTPTD 298
BLAST of mRNA_E-siliculosus-1a_F_contig110.689.1 vs. uniprot
Match: A0A6H5K146_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K146_9PHAE) HSP 1 Score: 64.3 bits (155), Expect = 5.840e-9 Identity = 32/44 (72.73%), Postives = 36/44 (81.82%), Query Frame = 1
Query: 514 GRSQSRRTSTLPLSTLSGVNRALQHAPDEANSIEPIAKSFMQDP 645
G S + +TS PLS +SG NRALQHAPDEANSIEPIAK F+QDP
Sbjct: 3 GPSPTGKTSIPPLSIISGENRALQHAPDEANSIEPIAKPFVQDP 46 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig110.689.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 7
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig110.689.1 >prot_E-siliculosus-1a_F_contig110.689.1 ID=prot_E-siliculosus-1a_F_contig110.689.1|Name=mRNA_E-siliculosus-1a_F_contig110.689.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=499bp MRCWTPLMYEVLPSITRTHHKSFPSNLVLFSIELWALTTHARPPVLSPLAback to top mRNA from alignment at E-siliculosus-1a_F_contig110:1792..14333+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig110.689.1 ID=mRNA_E-siliculosus-1a_F_contig110.689.1|Name=mRNA_E-siliculosus-1a_F_contig110.689.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=12542bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig110:1792..14333+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig110:1792..14333+ >mRNA_E-siliculosus-1a_F_contig110.689.1 ID=mRNA_E-siliculosus-1a_F_contig110.689.1|Name=mRNA_E-siliculosus-1a_F_contig110.689.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=2994bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig110:1792..14333+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |