mRNA_E-siliculosus-1a_F_contig110.688.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig110.688.1
Unique NamemRNA_E-siliculosus-1a_F_contig110.688.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig110.688.1 vs. uniprot
Match: D8LSW2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSW2_ECTSI)

HSP 1 Score: 162 bits (410), Expect = 3.340e-50
Identity = 85/95 (89.47%), Postives = 86/95 (90.53%), Query Frame = 1 
Query:    1 MASVRQAGETSQGQASGGGQGPTASSVEQQHRQHVEEGGNVAHQPGNRMAEAMKRGGILGWGSYLTFAWAGSFLKLGSTVTLKEEHLEGIYDKHE 285
            M SVRQA +TSQGQASGGGQ PTASS EQQ  QHVEEGGNVAHQ GN MAEAMKRGGILGWGSYLTFAWAG FLKLGSTVTLKEEHLEGIYDKHE
Sbjct:    1 MGSVRQADQTSQGQASGGGQRPTASSREQQQSQHVEEGGNVAHQSGNLMAEAMKRGGILGWGSYLTFAWAGPFLKLGSTVTLKEEHLEGIYDKHE 95
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BLAST of mRNA_E-siliculosus-1a_F_contig110.688.1 vs. uniprot
Match: A0A6H5JGA2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGA2_9PHAE)

HSP 1 Score: 156 bits (395), Expect = 2.680e-46
Identity = 82/96 (85.42%), Postives = 86/96 (89.58%), Query Frame = 1 
Query:    1 MASVRQAGETSQGQAS-GGGQGPTASSVEQQHRQHVEEGGNVAHQPGNRMAEAMKRGGILGWGSYLTFAWAGSFLKLGSTVTLKEEHLEGIYDKHE 285
            MASVRQA E SQGQ S GGGQGPTAS  EQQ  +HVEEGG+VAHQPGNRMAEAM+RGGILGWGSYLTFAWAG FLKLGST+TLKEEHLEGIY KHE
Sbjct:    1 MASVRQADEASQGQTSIGGGQGPTASPGEQQQHEHVEEGGDVAHQPGNRMAEAMQRGGILGWGSYLTFAWAGPFLKLGSTITLKEEHLEGIYHKHE 96
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BLAST of mRNA_E-siliculosus-1a_F_contig110.688.1 vs. uniprot
Match: A0A6H5JHZ3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHZ3_9PHAE)

HSP 1 Score: 144 bits (362), Expect = 1.230e-41
Identity = 81/97 (83.51%), Postives = 84/97 (86.60%), Query Frame = 1 
Query:    1 MASVRQAGETSQGQAS-GGGQGPTASSVEQQHRQHVEEGGNVAHQ-PGNRMAEAMKRGGILGWGSYLTFAWAGSFLKLGSTVTLKEEHLEGIYDKHE 285
            MASV QA +TSQGQAS  GGQ  TASS EQQ RQH E+G NVAHQ P NRMA AMKRGGI+GWGSYLTFAWAGSFLKLGSTVTLKEEHLEGIYDKHE
Sbjct:    1 MASVCQADKTSQGQASVRGGQDATASSREQQQRQHAEDGENVAHQQPDNRMAAAMKRGGIMGWGSYLTFAWAGSFLKLGSTVTLKEEHLEGIYDKHE 97
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BLAST of mRNA_E-siliculosus-1a_F_contig110.688.1 vs. uniprot
Match: A0A6H5K598_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K598_9PHAE)

HSP 1 Score: 93.6 bits (231), Expect = 4.800e-23
Identity = 43/51 (84.31%), Postives = 44/51 (86.27%), Query Frame = 1 
Query:  133 PGNRMAEAMKRGGILGWGSYLTFAWAGSFLKLGSTVTLKEEHLEGIYDKHE 285
            P       MKRGGI+GWGSYLTFAWAGSFLKLGSTVTLKEEHLEGIYDKHE
Sbjct:   12 PATAWRRPMKRGGIIGWGSYLTFAWAGSFLKLGSTVTLKEEHLEGIYDKHE 62
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BLAST of mRNA_E-siliculosus-1a_F_contig110.688.1 vs. uniprot
Match: D8LSW6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSW6_ECTSI)

HSP 1 Score: 93.2 bits (230), Expect = 4.430e-20
Identity = 43/47 (91.49%), Postives = 45/47 (95.74%), Query Frame = 1 
Query:  145 MAEAMKRGGILGWGSYLTFAWAGSFLKLGSTVTLKEEHLEGIYDKHE 285
            MAEA++RGGILGWGSYLTFAWAG FLKLGSTVTLKEEHLEGIY KHE
Sbjct:    1 MAEALQRGGILGWGSYLTFAWAGPFLKLGSTVTLKEEHLEGIYHKHE 47
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig110.688.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D8LSW2_ECTSI3.340e-5089.47Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JGA2_9PHAE2.680e-4685.42Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JHZ3_9PHAE1.230e-4183.51Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K598_9PHAE4.800e-2384.31Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LSW6_ECTSI4.430e-2091.49Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig110contigE-siliculosus-1a_F_contig110:945..1229 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop0
Cds size285
Model size285
Exons1
Ec32 orthologEc-26_001640.1
Ec32 ortholog descriptionhypothetical protein
Hectar predicted targeting categoryother localisation
BRITEko00000,ko00001,ko02000
Best eggNOG OGNA|NA|NA
Best tax levelEukaryota
COG Functional cat.V
EggNOG OGsCOG1132@1,KOG0054@2759
EggNOG free text desc.ATPase activity, coupled to transmembrane movement of substances
KEGG Pathwayko01523,ko02010,ko04024,ko04976,map01523,map02010,map04024,map04976
KEGG TC3.A.1.208.7
KEGG koko:K05673
Seed eggNOG ortholog2880.D8LSW6
Seed ortholog evalue1.6e-16
Seed ortholog score92.0
Taxonomic scopeEukaryota
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927603.5432417-CDS-E-siliculosus-1a_F_contig110:944..12291622927603.5432417-CDS-E-siliculosus-1a_F_contig110:944..1229Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig110 945..1229 -
1696318606.9988008-CDS-E-siliculosus-1a_F_contig110:944..12291696318606.9988008-CDS-E-siliculosus-1a_F_contig110:944..1229Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig110 945..1229 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig110.688.1prot_E-siliculosus-1a_F_contig110.688.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig110 945..1229 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig110.688.1

>prot_E-siliculosus-1a_F_contig110.688.1 ID=prot_E-siliculosus-1a_F_contig110.688.1|Name=mRNA_E-siliculosus-1a_F_contig110.688.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=95bp
MASVRQAGETSQGQASGGGQGPTASSVEQQHRQHVEEGGNVAHQPGNRMA
EAMKRGGILGWGSYLTFAWAGSFLKLGSTVTLKEEHLEGIYDKHE
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mRNA from alignment at E-siliculosus-1a_F_contig110:945..1229-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig110.688.1 ID=mRNA_E-siliculosus-1a_F_contig110.688.1|Name=mRNA_E-siliculosus-1a_F_contig110.688.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=285bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig110:945..1229- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGGCTTCTGTCCGTCAAGCCGGCGAGACCAGTCAAGGCCAAGCAAGCGG
AGGTGGCCAGGGCCCGACTGCTTCATCCGTGGAACAGCAGCACCGCCAGC
ATGTTGAAGAGGGCGGAAATGTGGCCCATCAACCCGGCAACCGAATGGCG
GAAGCCATGAAGAGAGGAGGCATCTTGGGCTGGGGATCCTACTTGACGTT
CGCCTGGGCAGGGTCTTTCCTCAAGCTCGGCTCCACTGTCACCCTCAAGG
AGGAGCACCTTGAAGGAATCTATGACAAGCACGAG
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig110:945..1229-

>mRNA_E-siliculosus-1a_F_contig110.688.1 ID=mRNA_E-siliculosus-1a_F_contig110.688.1|Name=mRNA_E-siliculosus-1a_F_contig110.688.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=570bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig110:945..1229- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGGCTTCTGTCCGTCAAGCCGGCGAGACCAGTCAAGGCCAAGCAAGCGG
AGGTGGCCAGGGCCCGACTGCTTCATCCGTGGAACAGCAGCACCGCCAGC
ATGTTGAAGAGGGCGGAAATGTGGCCCATCAACCCGGCAACCGAATGGCG
GAAGCCATGAAGAGAGGAGGCATCTTGGGCTGGGGATCCTACTTGACGTT
CGCCTGGGCAGGGTCTTTCCTCAAGCTCGGCTCCACTGTCACCCTCAAGG
AGGAGCACCTTGAAGGAATCTATGACAAGCACGAGATGGCTTCTGTCCGT
CAAGCCGGCGAGACCAGTCAAGGCCAAGCAAGCGGAGGTGGCCAGGGCCC
GACTGCTTCATCCGTGGAACAGCAGCACCGCCAGCATGTTGAAGAGGGCG
GAAATGTGGCCCATCAACCCGGCAACCGAATGGCGGAAGCCATGAAGAGA
GGAGGCATCTTGGGCTGGGGATCCTACTTGACGTTCGCCTGGGCAGGGTC
TTTCCTCAAGCTCGGCTCCACTGTCACCCTCAAGGAGGAGCACCTTGAAG
GAATCTATGACAAGCACGAG
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