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Homology
BLAST of mRNA_E-siliculosus-1a_F_contig11.684.1 vs. uniprot
Match: D7FL92_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FL92_ECTSI) HSP 1 Score: 330 bits (846), Expect = 1.050e-108 Identity = 164/178 (92.13%), Postives = 172/178 (96.63%), Query Frame = 2
Query: 23 MGDADRKIPAVKLFISQLNNARQPVEAAGLTGLEENNLVGLVLVGIEFTRVWVQGIVIEVNPAERSFIVDDNTGTVTAVVPGVGLDGGSNDAGHGV--GDADGLPKKGQHVLMVGAVEAPCDDNGQGRRV-KRRSSCRRYRVLCDVVKDVGPESPNRDALWGLEVIDFWMSRPRNPQG 547
MGDADRKIPAVKLF+SQLN+ARQPVEAA +TGLEE+NLVGLVL+GIEFTRVWVQGIVIEVNPAERSFIVDDNTGTVTAVVPG+GLDGG+NDAGHGV G ADGLPKKGQHVLMVGAVEAPCDDNGQGRRV +RRSSCRRYRVLCDVVKDVGPESPNRD LWGLEVIDFWMSRPRNPQG
Sbjct: 1 MGDADRKIPAVKLFVSQLNSARQPVEAADVTGLEESNLVGLVLMGIEFTRVWVQGIVIEVNPAERSFIVDDNTGTVTAVVPGIGLDGGTNDAGHGVRDGGADGLPKKGQHVLMVGAVEAPCDDNGQGRRVQRRRSSCRRYRVLCDVVKDVGPESPNRDTLWGLEVIDFWMSRPRNPQG 178
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Start | 1 |
| Stop | 1 |
| Cds size | 528 |
| Model size | 1570 |
| Exons | 4 |
| Ec32 ortholog | Ec-15_004760.1 |
| Ec32 ortholog description | hypothetical protein |
| Hectar predicted targeting category | other localisation |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig11.684.1 >prot_E-siliculosus-1a_F_contig11.684.1 ID=prot_E-siliculosus-1a_F_contig11.684.1|Name=mRNA_E-siliculosus-1a_F_contig11.684.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=176bp
MGDADRKIPAVKLFISQLNNARQPVEAAGLTGLEENNLVGLVLVGIEFTR
VWVQGIVIEVNPAERSFIVDDNTGTVTAVVPGVGLDGGSNDAGHGVGDAD
GLPKKGQHVLMVGAVEAPCDDNGQGRRVKRRSSCRRYRVLCDVVKDVGPE
SPNRDALWGLEVIDFWMSRPRNPQG* back to topmRNA from alignment at E-siliculosus-1a_F_contig11:79204..82496+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_E-siliculosus-1a_F_contig11.684.1 ID=mRNA_E-siliculosus-1a_F_contig11.684.1|Name=mRNA_E-siliculosus-1a_F_contig11.684.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=3293bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig11:79204..82496+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ACTTACTGCTGCTGTTGCCCCGATGGGGGACGCCGACCGCAAGATTCCGG
CCGTGAAGCTTTTCATCTCTCAGCTGAATAACGCCCGTCAGCCCGTCGAA
GCCGCTGGTTTGACCGGTCTGGAAGAGAACAACCTCGTGGGGCTAGTCCT
CGTGGGCATTGAGTTTACTCGGGTGTGGGTCCAGGTACGCAGCAGCTGGT
GCAAGCTTGCCTCAACGCCAGAGAGTGCAGATGACCGATTGTTTATCACG
CGTTCGTACATTGGCTATTTTGATTGCCCTCTCATCGAAGAACCGTTGCG
ACCTCTACCCAATCTGCCTCAATACCGGCACAAGTGTTGTAGCCATTGCA
TGTAGACTGCATACCTATCCGGTACCGCCGTTTATCGGGCAAAACGTGAT
GAATCCATTAGTCCACCCGGCAATCACAAGCTCAATCCAGATCTCAATCC
ATATTCCACCCATGCCATTAGAGGTTGGCTTGTCTACGTATCACCCACGC
AGTGTTGTAGCCAAACTTGCGGCGTTGCTCATGAAGCAAGCACAATCACC
CCGCTAACACATTTGGGCACGCCGGCAGAAGCTCACAACGAGGCAACTAC
TGTGATACATAACACAAGGATGGCTGGCAACGTGGAGGTGCAAGAGTCTC
AAATGGCCCAACTTTGAGTGGACTACATGCGTGATCGATTTTCTTCGGTA
ATTGTTCCGACCCCAGCGTCTACCGTTGAGACGGTGATGATCGCCCTGTG
CATTCGTAGGCCGCTCATGGGGCTAGTTGACGAAACAGCACGGCGTGTGT
ACACCCGCTGGGTGTGTTCGCTGCGCACCGACATGTCTGTCCATTCCCTT
TTTGATTTGAGCTCACGAGTGATGTATGTATGCCCGAAGACTTCATGATG
CGTGACTCGTAGTTGAAACTTGGATACAACGTCTAGGGATTGGCAAGCCA
GATAGGGCTTGCTACAAGTCTCCTATTGATGCTGTCCAAAGCGTTCGGCA
CCCCAAGGTTTGGCGGCACTTGGTGGCACGCATCATCCCAGCGATCATCC
TACAAATCTCGTCACGTCCGCCGGTCACGCTTGCCCCGGCAGGGCATTGT
GATCGAGGTGAATCCTGCCGAGCGCAGCTTCATCGTCGACGATAACACGG
GCACAGTTACAGCCGTTGTGCCCGGAGTCGGACTCGACGGCGGCTCCAAC
GATGCAGGGCATGGTGTTGGTGATGCTGACGGCTTGCCCAAGAAAGGTGT
GTAGCATGTGCTGTGGACCACCACCGGTAAGGTGGAATTGCAAGATAGTA
CAGCAGCAACAAACCATGAATGAAGACTCCGCCAGAGGTGCTACATGCTG
CCATTCTACGAAGAAAGAACAACCATGAATCGGACGTGAGACGCTTGGAA
GCAAGCAATTGAACGATACCTGTGCAGCAACAGCGCGACCCCCTCGGGCG
TTCATGTGACTTGCCCCCCAATGATTGCGTCCGTTATTTACTACGTTTCG
TCTCCTACTTGCTTCTTGCTTACTGCTGCCTCTTTTGTCGCGCTTGTTGG
CCGTTCCAATGGTTGGAATCTATCTCCTTTGATCCGGGCAGGCCAGCACG
TCCTAATGGTTGGAGCGGTGGAGGCTCCGTGCGATGACAACGGGCAGGGT
CGGAGGGTGAAGCGAAGAAGCTCGTGCAGGCGATATCGTGTGCTTTGTGA
CGTTGTCAAGGTACGAGTGTCTCGCCCCCATGAGGGAAGGTCTTGACCAG
TTGTGCGGATCCACGTTGTAGACTGGGACAAGGCATATTTTGTGGTAGAT
TTTCCTCACACCAACATAATTTTTTTTTGCGAGAACCCTAGTGTCGTATC
TATACATCACGTAAGCACGATGATAGAGTATCACCAGGGCTATCATGGCG
TCCCACCTCGTGTCTACAACTCTGAAGTATCTAACCAGGGCGTGGTAGTG
ATGGTACGTTTTCTTCACACCCACGGCTTGTGGGACCACTCTATTATCTG
CTTGGACGAATAACAGAACTCCCTGCCGTGATTGGCAAATAATCGGCTTT
TTTATGCTTTCAACGAAACGTCTTCGCTCAAACGTGCCCGTGAACCTGAC
GACCGCCGTTCTCGTCCTTCGATTGTTGGCCTTGCGCCGGCCTCGTGTTC
GCCGCTCGGTCTCGCGTCTCGTCCTATCAGGATGTGGGCCCGGAAAGCCC
GAACAGGGATGCTTTGTGGGGTCTAGAGGTGATAGATTTTTGGATGAGTC
GGCCGCGAAATCCCCAGGGCTAATTGGACGAGCCAGGCCAGCTTGTATGT
ATAATTCGACGGACCTTGAGTACCTAAGGTCAGGTCGTTCATGAACACAG
TTTTGTTTGTTTGTTTTTGTCGAGGTGTATGCATTCTTGTTGAGGACTTT
GGTGCGCATCGGGCCTCTTCGTGCGAGCGTTTGTAGTTTTCACACCGCGA
TACTGCCGTGTTGTCGAGTACCTTGCGTTCTTCAGGGGCCTCCAGCTTAT
TCAGAGCGCGCATACCTTAGCTGCTCACACAAGAACGTTTGTTTCTCATT
CGCTAGCTAGCGTAGGTGTCGCCAACCAACTACATACCCCTCCACAATAG
ACAACAGGAGGGACAGGTTAAGGCGGTAGTAGGCGTTGGGGCGGAGGGCC
AAAGGTGCTGAAGACCCGTGTATGTTGTGTCCCGTCCATGGGATGGACAG
GCGCGGTGGCTTCTTAGGGCCGGTGGCATTCACGATGCGAGAGCGCTATT
TCGATATATGTGTGTCCATCGGGAAACAAACGCATTCTCATTTGCATTTC
TCTTGTTTTCGCGACCCAGGCCACGAGTTGTTTGTAGAATGTAGAATGTA
GCTGTTCCAACGGCCAGCCAAGGAGTATTTCAGGTGTTTTAACAGCAGTG
GAGAGACAAGGCCTAGTGGAATGGGACTCAATGATATTGGCCACAGGGAG
GGAGGTGTCCTTGAGGGAGAGACGTGGGCAACGGAGGGAATGGTTTCGTA
CATGTAGACCCTACAAGATAGCTGGTCCTGTAGATTGATCGATGGCCACA
GCTATGATCGAGGAGCGTTGGAGGATGATTATGATTCCACACGCATGTGA
AGCTTTTCGACAAATGTGCAGGGCGCGCCTGCACTTGAAGTGACTCTGCG
GCTAATGTTATTGTTGGCGTCTCGAACGAGATCTGCGCAGTCGGCGACAA
CTGAAGAAAACGCTGGCGGCAGACCGTCGGACGGCAGACCAGACCCACTC
GGAGTTATGTTGAATGGAAAGTTGTTGGAGTCCTAGCACCGTG back to topCoding sequence (CDS) from alignment at E-siliculosus-1a_F_contig11:79204..82496+ >mRNA_E-siliculosus-1a_F_contig11.684.1 ID=mRNA_E-siliculosus-1a_F_contig11.684.1|Name=mRNA_E-siliculosus-1a_F_contig11.684.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1056bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig11:79204..82496+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGGGGGACGCCGACCGCAAGATTCCGGCCGTGAAGCTTTTCATCTCTCA
GCTGAATAACGCCCGTCAGCCCGTCGAAGCCGCTGGTTTGACCGGTCTGG
AAGAGAACAACCTCGTGGGGCTAGTCCTCGTGGGCATTGAGTTTACTCGG
GTGTGGGTCCAGATGGGGGACGCCGACCGCAAGATTCCGGCCGTGAAGCT
TTTCATCTCTCAGCTGAATAACGCCCGTCAGCCCGTCGAAGCCGCTGGTT
TGACCGGTCTGGAAGAGAACAACCTCGTGGGGCTAGTCCTCGTGGGCATT
GAGTTTACTCGGGTGTGGGTCCAGGGCATTGTGATCGAGGTGAATCCTGC
CGAGCGCAGCTTCATCGTCGACGATAACACGGGCACAGTTACAGCCGTTG
TGCCCGGAGTCGGACTCGACGGCGGCTCCAACGATGCAGGGCATGGTGTT
GGTGATGCTGACGGCTTGCCCAAGAAAGGGCATTGTGATCGAGGTGAATC
CTGCCGAGCGCAGCTTCATCGTCGACGATAACACGGGCACAGTTACAGCC
GTTGTGCCCGGAGTCGGACTCGACGGCGGCTCCAACGATGCAGGGCATGG
TGTTGGTGATGCTGACGGCTTGCCCAAGAAAGGCCAGCACGTCCTAATGG
TTGGAGCGGTGGAGGCTCCGTGCGATGACAACGGGCAGGGTCGGAGGGTG
AAGCGAAGAAGCTCGTGCAGGCGATATCGTGTGCTTTGTGACGTTGTCAA
GGCCAGCACGTCCTAATGGTTGGAGCGGTGGAGGCTCCGTGCGATGACAA
CGGGCAGGGTCGGAGGGTGAAGCGAAGAAGCTCGTGCAGGCGATATCGTG
TGCTTTGTGACGTTGTCAAGGATGTGGGCCCGGAAAGCCCGAACAGGGAT
GCTTTGTGGGGTCTAGAGGTGATAGATTTTTGGATGAGTCGGCCGCGAAA
TCCCCAGGGCTAAGATGTGGGCCCGGAAAGCCCGAACAGGGATGCTTTGT
GGGGTCTAGAGGTGATAGATTTTTGGATGAGTCGGCCGCGAAATCCCCAG
GGCTAA back to top
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