mRNA_E-siliculosus-1a_F_contig10958.660.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig10958.660.1
Unique NamemRNA_E-siliculosus-1a_F_contig10958.660.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig10958.660.1 vs. uniprot
Match: D8LQ00_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQ00_ECTSI)

HSP 1 Score: 325 bits (834), Expect = 1.030e-109
Identity = 164/167 (98.20%), Postives = 166/167 (99.40%), Query Frame = 1 
Query:    1 QVVGQSASADDSAIFYDNLCAFQNSGPVGQGYLEESAELSSTNVDPEYITAQFTNTGTVTASAQVVMFSTEYPAPNSDEAIDRVVAEFEQEGNIFTVDAEFQADGTEDENFCAGDNGCSLAAYYIEIDTESGDADRIFGTTCQATNGVLMYEGFTGVGDSTFSDTEV 501
            +VVGQSASADDSAIFYDNLCAFQNSGPVGQGYLEESAELSSTNVDPEYITAQFTNTGTVTASAQVVMFSTEYPAPNSDEAIDRVVAEFEQEGNIFTVDAEFQADGTEDENFCAGDNGCSLAAYYIEIDTES DADRIFGTTCQATNGVL+YEGFTGVGDSTFSDTEV
Sbjct:   48 RVVGQSASADDSAIFYDNLCAFQNSGPVGQGYLEESAELSSTNVDPEYITAQFTNTGTVTASAQVVMFSTEYPAPNSDEAIDRVVAEFEQEGNIFTVDAEFQADGTEDENFCAGDNGCSLAAYYIEIDTESDDADRIFGTTCQATNGVLLYEGFTGVGDSTFSDTEV 214
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BLAST of mRNA_E-siliculosus-1a_F_contig10958.660.1 vs. uniprot
Match: A0A6H5L7W1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7W1_9PHAE)

HSP 1 Score: 318 bits (815), Expect = 1.600e-105
Identity = 158/167 (94.61%), Postives = 166/167 (99.40%), Query Frame = 1 
Query:    1 QVVGQSASADDSAIFYDNLCAFQNSGPVGQGYLEESAELSSTNVDPEYITAQFTNTGTVTASAQVVMFSTEYPAPNSDEAIDRVVAEFEQEGNIFTVDAEFQADGTEDENFCAGDNGCSLAAYYIEIDTESGDADRIFGTTCQATNGVLMYEGFTGVGDSTFSDTEV 501
            +VVGQSASADDSAIFYDNLCAF+NSGPVGQGYLEESAELSST VDPEYITAQFTNTGT+TASAQVVMFSTEYPAPN+DEAIDRVVAE+EQEGNIFTVDAEFQADGTEDENFCAGD+GCSLAAYYIEIDTESGDADRIFGTTCQA+NGVL+YEGFTGVGDSTFSDTEV
Sbjct:  144 RVVGQSASADDSAIFYDNLCAFRNSGPVGQGYLEESAELSSTTVDPEYITAQFTNTGTITASAQVVMFSTEYPAPNADEAIDRVVAEYEQEGNIFTVDAEFQADGTEDENFCAGDDGCSLAAYYIEIDTESGDADRIFGTTCQASNGVLLYEGFTGVGDSTFSDTEV 310
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig10958.660.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LQ00_ECTSI1.030e-10998.20Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L7W1_9PHAE1.600e-10594.61Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig10958contigE-siliculosus-1a_F_contig10958:158..1658 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start0
Stop0
Cds size501
Model size501
Exons3
Ec32 orthologEc-15_001480.1
Ec32 ortholog descriptionexpressed unknown protein
Hectar predicted targeting categoryother localisation
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig10958.660.1prot_E-siliculosus-1a_F_contig10958.660.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig10958 158..1658 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927598.6127205-CDS-E-siliculosus-1a_F_contig10958:157..3261622927598.6127205-CDS-E-siliculosus-1a_F_contig10958:157..326Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig10958 158..326 +
1696318604.4041467-CDS-E-siliculosus-1a_F_contig10958:157..3261696318604.4041467-CDS-E-siliculosus-1a_F_contig10958:157..326Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig10958 158..326 +
1622927598.6241472-CDS-E-siliculosus-1a_F_contig10958:882..10001622927598.6241472-CDS-E-siliculosus-1a_F_contig10958:882..1000Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig10958 883..1000 +
1696318604.422774-CDS-E-siliculosus-1a_F_contig10958:882..10001696318604.422774-CDS-E-siliculosus-1a_F_contig10958:882..1000Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig10958 883..1000 +
1622927598.6363788-CDS-E-siliculosus-1a_F_contig10958:1444..16581622927598.6363788-CDS-E-siliculosus-1a_F_contig10958:1444..1658Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig10958 1445..1658 +
1696318604.4337075-CDS-E-siliculosus-1a_F_contig10958:1444..16581696318604.4337075-CDS-E-siliculosus-1a_F_contig10958:1444..1658Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig10958 1445..1658 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig10958.660.1

>prot_E-siliculosus-1a_F_contig10958.660.1 ID=prot_E-siliculosus-1a_F_contig10958.660.1|Name=mRNA_E-siliculosus-1a_F_contig10958.660.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=167bp
QVVGQSASADDSAIFYDNLCAFQNSGPVGQGYLEESAELSSTNVDPEYIT
AQFTNTGTVTASAQVVMFSTEYPAPNSDEAIDRVVAEFEQEGNIFTVDAE
FQADGTEDENFCAGDNGCSLAAYYIEIDTESGDADRIFGTTCQATNGVLM
YEGFTGVGDSTFSDTEV
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mRNA from alignment at E-siliculosus-1a_F_contig10958:158..1658+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig10958.660.1 ID=mRNA_E-siliculosus-1a_F_contig10958.660.1|Name=mRNA_E-siliculosus-1a_F_contig10958.660.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=1501bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig10958:158..1658+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
CAGGTGGTCGGGCAGTCGGCCTCGGCGGACGACTCGGCCATCTTCTACGA
CAACCTCTGCGCCTTCCAGAATTCGGGGCCGGTGGGGCAGGGCTACCTGG
AGGAGTCGGCCGAGCTGAGCAGCACCAATGTCGACCCAGAGTACATCACC
GCACAGTTCACCAACACTGGTGAGAGAAGCGTGGCGTGTCTGTTGCGTGC
TGACCAGTCGTTTTGTGTTGTTGCCCTGCTGATGACCCTTGTTCTGGAGA
GTGCGTTCGTCGCTGGCCGGATAAGTTGAACGGATGGCTGGGCTGCCTTA
CTATTTTTTTTCTTTTGTTGCTAGAGAGAGTCTTGTCACTTGACGGCTAC
GAACGACATTGGTTGGGTCAGGAAATGATTGTTCTTTTTTTTTTTTTCTT
ATGCTTATGCATAGCGTTACCGCCTTCGTCGACTGTACGTACGTCAACCA
TGAGTTGCCCGGGGTTTTTTCTTTGCTCATGCGGAGCTTCTGTTTACCGC
CCTCGTACTTCACATTGCGTTCATACCCTGTATTTGTTCTAAATACCCAA
GCGCATAGGTTCTGTTCACCGTCTTCGTCGACTTTACATGCGTACACACT
CAAAAAAATACGTAGGTTCTGTGTGCCGCCTTGGTCGACACTTACACTTT
TACATACAAGACAAGATAAAGAGAACCTAACTATGTTAAACCCCATAACT
TGTCCCCTGTCCCCTCCTGACGCAGGAACCGTCACGGCCTCGGCCCAGGT
GGTCATGTTCAGCACGGAGTACCCGGCCCCTAACTCTGACGAGGCTATCG
ACCGCGTCGTGGCGGAATTTGAGCAGGAGGGGAACATTTTCACGTGAGTT
GAGATGATGACAACAGCTTGTTAAGGGCGTACGTACAATCACGTGAGTCA
GATTATACTATTTTTTAGTCAGATTATACTATCATATTAACTTTAGTTTT
GGCTCCGCTTGTAGGAGCAGGGGAACATTGTCACGTGGGTGAGACGATAA
ACTTAGTTTGGGCTCGCCTCGAGCAGGAGGGGGACATTTTCAAGTTAGAT
GGTGAAAGACTTGGAAGATCCCGGCCGTGAGGGTCACATCCAGGTCCAGG
CAGGTCCGGGTGGGTATGTGTGGTGGTTGTGTTCATGTTGTAGGTGGTTG
TTTGTTGCCGATTTTCCTCGTTGCAGCAGCATCGAAGCAGTCACTCCTAC
AAGACGTCTCATTCACGCACCAATCAAATCAATCCCACAACAACGACGTC
ACATCCACGGGTCAAATCAAATCAATCCAACGACCAGGGTCGATGCCGAG
TTCCAAGCCGACGGCACAGAGGACGAGAACTTCTGCGCCGGCGACAACGG
GTGCTCCCTGGCTGCTTACTACATCGAGATCGACACCGAAAGCGGCGACG
CTGACCGCATCTTCGGGACCACCTGCCAGGCAACAAACGGGGTGCTGATG
TACGAGGGCTTCACGGGGGTGGGCGACTCCACTTTTTCGGACACGGAGGT
G
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig10958:158..1658+

>mRNA_E-siliculosus-1a_F_contig10958.660.1 ID=mRNA_E-siliculosus-1a_F_contig10958.660.1|Name=mRNA_E-siliculosus-1a_F_contig10958.660.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1002bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig10958:158..1658+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
CAGGTGGTCGGGCAGTCGGCCTCGGCGGACGACTCGGCCATCTTCTACGA
CAACCTCTGCGCCTTCCAGAATTCGGGGCCGGTGGGGCAGGGCTACCTGG
AGGAGTCGGCCGAGCTGAGCAGCACCAATGTCGACCCAGAGTACATCACC
GCACAGTTCACCAACACTGCAGGTGGTCGGGCAGTCGGCCTCGGCGGACG
ACTCGGCCATCTTCTACGACAACCTCTGCGCCTTCCAGAATTCGGGGCCG
GTGGGGCAGGGCTACCTGGAGGAGTCGGCCGAGCTGAGCAGCACCAATGT
CGACCCAGAGTACATCACCGCACAGTTCACCAACACTGGAACCGTCACGG
CCTCGGCCCAGGTGGTCATGTTCAGCACGGAGTACCCGGCCCCTAACTCT
GACGAGGCTATCGACCGCGTCGTGGCGGAATTTGAGCAGGAGGGGAACAT
TTTCACGAACCGTCACGGCCTCGGCCCAGGTGGTCATGTTCAGCACGGAG
TACCCGGCCCCTAACTCTGACGAGGCTATCGACCGCGTCGTGGCGGAATT
TGAGCAGGAGGGGAACATTTTCACGGTCGATGCCGAGTTCCAAGCCGACG
GCACAGAGGACGAGAACTTCTGCGCCGGCGACAACGGGTGCTCCCTGGCT
GCTTACTACATCGAGATCGACACCGAAAGCGGCGACGCTGACCGCATCTT
CGGGACCACCTGCCAGGCAACAAACGGGGTGCTGATGTACGAGGGCTTCA
CGGGGGTGGGCGACTCCACTTTTTCGGACACGGAGGTGGGTCGATGCCGA
GTTCCAAGCCGACGGCACAGAGGACGAGAACTTCTGCGCCGGCGACAACG
GGTGCTCCCTGGCTGCTTACTACATCGAGATCGACACCGAAAGCGGCGAC
GCTGACCGCATCTTCGGGACCACCTGCCAGGCAACAAACGGGGTGCTGAT
GTACGAGGGCTTCACGGGGGTGGGCGACTCCACTTTTTCGGACACGGAGG
TG
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