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Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1095.657.1 vs. uniprot
Match: A0A6H5KN98_9PHAE (PAS domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KN98_9PHAE) HSP 1 Score: 315 bits (807), Expect = 2.400e-107 Identity = 162/167 (97.01%), Postives = 162/167 (97.01%), Query Frame = 1
Query: 181 MQPTPRSTPARGATDMEQKRRIANRIHCRETRERKRRAEALLKEEVEILSLYKALVEEGPDLFSCHRVEPDAPFSFVCENYFHQLQLAPEDAVGKPLASIVDPEDAPILAEALNEVLANKTTIGDSEPDSGKLVKLRVSCGSISCSASMSMVIGSQGLVVVTRLYDN 681
MQPTPRSTP RGATDMEQKRRIANRIHCRETRERKRRAEALLKEEVEILSLYKALVEEGPDLFSCHRVEPDAPFSF CENYFHQLQLAPEDAVGKPLASIVDPEDAPILAEALNEVLANKT IGDSEP SGKLVKLRVSCGSISCSASMSMVIGSQGLVVVTRLY N
Sbjct: 1 MQPTPRSTPTRGATDMEQKRRIANRIHCRETRERKRRAEALLKEEVEILSLYKALVEEGPDLFSCHRVEPDAPFSFACENYFHQLQLAPEDAVGKPLASIVDPEDAPILAEALNEVLANKTNIGDSEPGSGKLVKLRVSCGSISCSASMSMVIGSQGLVVVTRLYGN 167
BLAST of mRNA_E-siliculosus-1a_F_contig1095.657.1 vs. uniprot
Match: A0A6H5KRF4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRF4_9PHAE) HSP 1 Score: 130 bits (328), Expect = 1.440e-34 Identity = 76/163 (46.63%), Postives = 100/163 (61.35%), Query Frame = 1
Query: 208 ARGATDMEQKR-RIANRIHCRETRERKRRAEALLKEEVEILSLYKALVEEGPDLFSCHRVEPDAPFSFVCENYFHQLQLAPEDAVGKPLASIVDPEDAPILAEA----LNEVLANKTTIGDSEPDSGKLVKLRVSCGSISCSASMSMVIGSQGLVVVTRLYDN 681
ARGA+ +R R ANRIHC+ETR+R+R E L E VE+L L +++VE GPDLFS H DAPFS++C+N+ +LQ+ PE VG+ L SIVD +A L A LNE +V +R++ G I C ASMS+ GS GL+VVTRLY +
Sbjct: 14 ARGASQKSDERSREANRIHCKETRDRRRERERALSEHVELLKLCQSIVEHGPDLFSLHNATIDAPFSYLCDNFTMRLQMPPEAMVGRSLLSIVDEREALSLRNAIFQVLNEAQHXXXXXXXXXXXXXAVVHVRIAHGQIFCEASMSIACGSHGLIVVTRLYSS 176
BLAST of mRNA_E-siliculosus-1a_F_contig1095.657.1 vs. uniprot
Match: D8LCA0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCA0_ECTSI) HSP 1 Score: 72.8 bits (177), Expect = 1.890e-12 Identity = 38/87 (43.68%), Postives = 53/87 (60.92%), Query Frame = 1
Query: 310 EEVEILSLYKALVEEGPDLFSCHRVEPDAPFSFVCENYFHQLQLAPEDAVGKPLASIVDPEDAPILAEALNEVLANKTTIGDSEPDS 570
+E ++L +Y+ +VE GPDLFS H DAPFSFV ++ + QL E +GKPL ++VDP+D +L AL VL T G +S
Sbjct: 8 QEEDVLEVYRDIVENGPDLFSLHGTTLDAPFSFVSKSLNLKFQLPSEYLLGKPLKTVVDPDDWGVLTTALLAVLGPNPTSGGKSGNS 94
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Start | 1 |
| Stop | 1 |
| Cds size | 504 |
| Model size | 701 |
| Exons | 5 |
| Ec32 ortholog | Ec-14_006560.1 |
| Ec32 ortholog description | PAS domain |
| Hectar predicted targeting category | other localisation |
| Ec32 ortholog description | Basic leucine zipper and PAS domain protein |
Relationships
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1622927598.2106147-UTR-E-siliculosus-1a_F_contig1095:23849..24029 | 1622927598.2106147-UTR-E-siliculosus-1a_F_contig1095:23849..24029 | Ectocarpus siliculosus Ec863f_EcPH12_90f female | UTR | E-siliculosus-1a_F_contig1095 23850..24029 + |
| 1696318604.2201548-UTR-E-siliculosus-1a_F_contig1095:23849..24029 | 1696318604.2201548-UTR-E-siliculosus-1a_F_contig1095:23849..24029 | Ectocarpus siliculosus Ec863f_EcPH12_90f female | UTR | E-siliculosus-1a_F_contig1095 23850..24029 + |
| 1622927598.3848622-UTR-E-siliculosus-1a_F_contig1095:28457..28474 | 1622927598.3848622-UTR-E-siliculosus-1a_F_contig1095:28457..28474 | Ectocarpus siliculosus Ec863f_EcPH12_90f female | UTR | E-siliculosus-1a_F_contig1095 28458..28474 + |
| 1696318604.2700183-UTR-E-siliculosus-1a_F_contig1095:28457..28474 | 1696318604.2700183-UTR-E-siliculosus-1a_F_contig1095:28457..28474 | Ectocarpus siliculosus Ec863f_EcPH12_90f female | UTR | E-siliculosus-1a_F_contig1095 28458..28474 + |
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig1095.657.1 >prot_E-siliculosus-1a_F_contig1095.657.1 ID=prot_E-siliculosus-1a_F_contig1095.657.1|Name=mRNA_E-siliculosus-1a_F_contig1095.657.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=168bp
MQPTPRSTPARGATDMEQKRRIANRIHCRETRERKRRAEALLKEEVEILS LYKALVEEGPDLFSCHRVEPDAPFSFVCENYFHQLQLAPEDAVGKPLASI VDPEDAPILAEALNEVLANKTTIGDSEPDSGKLVKLRVSCGSISCSASMS MVIGSQGLVVVTRLYDN* back to topmRNA from alignment at E-siliculosus-1a_F_contig1095:23850..28474+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_E-siliculosus-1a_F_contig1095.657.1 ID=mRNA_E-siliculosus-1a_F_contig1095.657.1|Name=mRNA_E-siliculosus-1a_F_contig1095.657.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=4625bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1095:23850..28474+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female) CCGTCGACCTGCCTGCCGTAGACAATAGACCGAGAGGGAGGTGGATCCGC
GAATATTCGCGGCGGGGCGGGTGAAAGTGGAAATCTTTTTTTGCTGAAGA
CTTGGAAAGAACGCTGGGAAAGCTGGAAAACTGCCTCTTGGCACAACAAC
CTGCGCTCCTTCCTTGCAGACATCGACAAGATGCAACCCACACCACGCTC
CACCCCGGCCCGAGGCGCGACTGATATGGAACAGAAGAGGCGCATAGCGA
ACAGGATCCACTGCCGGGAAACACGCGAGAGAAAAAGGTATGGACGCCTG
TTGCACGGCGGCCTGCACCCACCCAGAGAGCGAGCGGGACCGGAAATAAA
TGACATACCACTGCTCCGTTGTGCTGCTGTCTCTTTCACTTCTTTAATGT
ATAGTGTGTGGTGGAGTGTAAACGATGTGTACCAAGAAAACCCATCGTCG
CGCCTTTGGGTCCCAAAGTCCAACTGAACTGCAGCTGCTACCACGCTTGC
TTTCTTCTGCTTCTTCTTGTGCTTTTCGTACGACTCTTGGTCGGTGGGTG
TGCTGCTGCTACCTCCCGCAGACGGGCTGAAGCGCTCCTGAAGGAGGTAA
GGACATATATATGTGGATGGCCTTCTCCGGTGTTAGGAAGAGGAGATGCA
TAGGCAACGGCGGCGGGATGGCTTCTTTTTGGGATTGGGATCGGTGTCAG
TCCAAAGTTCCAGTTTGCTTTATTTACTTGCTGTGATGATTTTCGGAAAT
AATTCATTTATTCGTGCAAGCGATTGTTTGTGGGCCCGGGACGCGCGGAA
TTCGAATTCTGAATTGATTTCTGAGGCGGCAGCCCCTTTCGGCTCGGTCC
GCATGCTCAACGGTGCTGCTGTGCTTGGCTACTGCTGCCTGTGGCGTTCT
TTGTCTCTCTTTGTCGTGCACTGCATGTCTTGGTGCTTCAGCCAGTAGGG
GCACGTCTATCTCATTGTTTCTTGGAATGGAGAGATTTTTCATGATGAAC
ATTTCCGCACTTCCACAAGGAAGAAGAATGCTGGTGGTCAAACTAGCTAG
GCGCTGATGATGATGGTGACTGAATAGATGCGTTGCACGACCGCGCCCGT
CGTGCCATCTCCTCTTTCGATTCCAATCTGCTGGCTGATGCAAGAATGCC
AGACGAAAAACCTCACAACCTACTTGTAACTGCGACGTGAACCGAATAAT
GCCACCTGCATCGCGGAACGCGGCAACCATACATGGCAAAAGAGACAACG
AAAATCAGAAGAGAAAAACATGCCGCCAGCCAACCGATAATTATCGCACG
GCAGATGACGCACTCTGTGATCTCGTTGAGTAGAATACTAGCATATCTTA
CCATAGGGCTTTCAGGAAGCGCGGGTGTGGGGAAACGTTGAACGCATAGA
AAATCACCGAGGAATCCAACGCAACATTTCATGTTCTTATTCGAGGTAAA
AGTCAATCTCAGCATGCTTTAGACCAACAATGAAAACGATCAAACGAACT
TGAAGTACATATATTCCCCGACATTGTCGAGGTGGAGGGGGGTACTGCTG
TAGAGCGGCGTGTTTTACTTTCGACCCAAGGGACCATCTGGGTAGTGCGG
CATGGCGATCATCCGATAAGTACTTACCTGGTACAGCAGTGTCGGGTGGA
CAAAAAATAAATGTGGATGTAATGTAAACATAAACGTCGCTTGCAGGCAA
GACACATGACGTGGGGGGGGTGGTTTCGAAAAAGCAATAAACTTCACTAC
TCATGTTCTAATTTTCTGAAGGGTTCGCAGAAGTTGATGTTCATGCTGTG
CATGGGCCCTGACCCTGTTGTCCAGGCATGCATCAGAATGAGATTTAGAT
TTGGAGTGAGTGGTGGAACTCGCTCACGGGCCGTCGGCGAGAGGCGGTTT
TTCCCATTAGGTCGATGACCCCCCTTTGCTTCACAAGGGGTGGGCTCGTC
CGCTTCCTTCCCTTGATTTTTTGAGAAAATGACCATATGATACAATACAA
CCAAAGACAGACTTACCGTTGGAGATATACACCGCAGCCACAGTACTCGC
CATGCATGCGTACGCGTCCTAACTACGGGAGGCGTCCGCGTCAGTTGGAC
CAGTCAGCACGGATGTCAGAAGGCAAATGAGCAGATAGTACTTTGTACTA
AACAACTACAACAAGTCTACAAAGCTGCCGCCAGCAGGACGTTGCTTGAA
CACTCCTGTTGTCGCTCGTTCTTGTCGACTTCTTACAAAGAACTGCTGCT
GTCGTCGTCGTACGCGCCACTATTCATCTTCCGCAAACGCCAGGAAGTCG
AGATCCTTTCCCTCTACAAGGCCTTGGTGGAGGAAGGCCCTGACCTCTTC
TCATGCCATCGCGTCGAACCAGACGCCCCCTTCAGGTGAGCCTACAGTAC
CACTACCATAGACGGCCAGCTAGCTCTTACAGCTGCTCTTTCGGATTCCG
GCCCTTTTTTCGGCAACAACACCGTGAGGCCTCGTGCGCTCATGACACGC
ATCATCAGGGGCCCCATGGGTAGGCATCCACTCTGTCAGCGCCAACCACG
GCGCCCTGTTGAAGGATTTGAGTGAACAGATGTTGATTATCCACCGTGTA
GAAACGTAACACATATAGTATATCTGTTCATGAGCTATTGTTGCAGACGT
TCGATGAAGCCCCAATCATGAAAGTTTTACGATGAGCTGTGAGTTTTTGA
CGGCCACGTCGGCTTGGAAACCCCCCCCCCCCAATGTGCGGTATGGGAGA
GGAGATGTTGCCGAGAACAGCTTCGGAGGCGAAGTGGGCAAACAAGAACA
GGGGTAGACAACCGACGGGGTGGGTCAAGGTTGGTTGTAGATGACGTATG
GAACAAGTGCGAAGTTGACGAAGGTGATACGCTGGGAACGGGAGGTTTAG
ACGGGTTCAAGGAGAAGATATCGGTTGCTTTCGCCGAGAGAGAATAACAG
AATCTAACCAAAGAAACCATGGATGAAGAGGGTCTAGATGTGTACGGAAT
ATTGAACGAAGATAGGATGCAAGGAGGACCTATCTATGTACATGGAACAA
TGGATGCAGGGACAAAGCTGAAGATCAAATTCAGGACCGGGGACATTGAC
CTTCGAGAACGTAGACGACGATTTTGGAAGGTAGACTATAAAACCTACAA
GTTCAAATGTAAACGCGGCTCCGAATGCGAAGACCGGGTTCATGTAGTTG
CGGAAATGTCCGTTGTACATGAAGTAGAGGGAAGTGTACATGACTGGGCT
GGGAGAAGTAGAAGGAAGATAGAGGGAGATGTTTGAGACATGGAATTGCC
AGGATACTGGGGCATAGGAAGTGGGTTGAACAGGCAGGAAGTGATATCGA
TAGGATAGATAGGCTAAGGAAGACATTTTTGAGCCACCTTTGGCAAAGAA
GGAAAGAGCGATTGGCCATCGGTGATCGGTCCTGTGAGAACAATGCTCCG
TCCTCTCGAGGACGCGTGGTCAATGGTCTAACCGCTAAGGCATGCAAAAC
ATGAGAGTACCCCCCCCCCCCCTGTTCAGAATCCATGTCAACTGGCAAGG
CTACCTGCCAATAAAGAGAGCCTCTTCTTCGCGGTCGAACCCTCACTAAA
TTTGGCGTCGTCAGATTCTGCGCTCACACAACAAGAAATTCGAAATCCTC
CCGCGTGCACAAGGATTGAGGTTGTAGCCGTAGTTTTTCACCCACCTCTC
TCCAGGAGTTGTGTGTCGGACTGGCAAGGATTTCAGCGACATCCGCAGGT
ATAGAGGTACTAGCACCGCCGCACCTCCCCCATTATCACGGAGAAGATGA
GGCGAGAACTCGGTACACCCATTCGTACGCTGCATAGACCAAACGTTACG
CCTATCTTGTTGTCGCTTTGACCAAGAGAAGTTCAGATGTTTACCAACTC
CCGAGCCCAGTTGTAGGGTGGTGTATCATCTCTATTTTCGTCGAGCGGGC
GCACTCGGTACCACCAAATAAAAGTCGGTGGGAAAGCTGTCTGCCCATTT
GTAACTTGACCGCCCCGCGTCCGTCCGTCTCCTGCTGTACCCAGCTTCGT
CTGCGAAAACTACTTTCATCAGCTGCAGCTCGCTCCAGAGGATGCAGTCG
GGAAGCCTCTCGCCAGGTGCTGTGTGGTGGTTGGTGGCTGGTACATGCTT
CCGTTCCGAGGTGTTCGAAACGGCGTAGAGAATGTTCATGAACATTGCTG
TTGTATGCACGAGTTGCAATCGGTTGCGATTTAGAATATACGATTTCGGC
CGGCGGGGGAAAGGGGGGGATACTGCTGTTATTGCCCTACTGGTGTTGGA
TAGAGTTGTGTGCCAGCATACTCCGGCGTTTGAACCCCCCCTCCTCTCTT
GCCGCTCTTCTTGCCCGTTTCTCTCCTTGTCCAAACAATGTCGTCATCAG
CATCGTGGATCCCGAAGACGCCCCGATTCTGGCAGAGGCACTCAATGAAG
TCCTAGCCAACAAAACCACCATCGGGGATTCTGAACCGGACAGTGGGAAG
CTCGTGAAGCTTCGGGTATCTTGCGGCAGCATTTCCTGCAGCGCGAGTAT
GTCTATGGTGATCGGCAGCCAGGGACTGGTCGTTGTCACTCGTCTCTACG
ACAATTAGTAGTCGGCTTTGGGCGG back to topCoding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1095:23850..28474+ >mRNA_E-siliculosus-1a_F_contig1095.657.1 ID=mRNA_E-siliculosus-1a_F_contig1095.657.1|Name=mRNA_E-siliculosus-1a_F_contig1095.657.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1008bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1095:23850..28474+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female) ATGCAACCCACACCACGCTCCACCCCGGCCCGAGGCGCGACTGATATGGA ACAGAAGAGGCGCATAGCGAACAGGATCCACTGCCGGGAAACACGCGAGA GAAAAAGATGCAACCCACACCACGCTCCACCCCGGCCCGAGGCGCGACTG ATATGGAACAGAAGAGGCGCATAGCGAACAGGATCCACTGCCGGGAAACA CGCGAGAGAAAAAGACGGGCTGAAGCGCTCCTGAAGGAGACGGGCTGAAG CGCTCCTGAAGGAGGAAGTCGAGATCCTTTCCCTCTACAAGGCCTTGGTG GAGGAAGGCCCTGACCTCTTCTCATGCCATCGCGTCGAACCAGACGCCCC CTTCAGGAAGTCGAGATCCTTTCCCTCTACAAGGCCTTGGTGGAGGAAGG CCCTGACCTCTTCTCATGCCATCGCGTCGAACCAGACGCCCCCTTCAGCT TCGTCTGCGAAAACTACTTTCATCAGCTGCAGCTCGCTCCAGAGGATGCA GTCGGGAAGCCTCTCGCCAGCTTCGTCTGCGAAAACTACTTTCATCAGCT GCAGCTCGCTCCAGAGGATGCAGTCGGGAAGCCTCTCGCCAGCATCGTGG ATCCCGAAGACGCCCCGATTCTGGCAGAGGCACTCAATGAAGTCCTAGCC AACAAAACCACCATCGGGGATTCTGAACCGGACAGTGGGAAGCTCGTGAA GCTTCGGGTATCTTGCGGCAGCATTTCCTGCAGCGCGAGTATGTCTATGG TGATCGGCAGCCAGGGACTGGTCGTTGTCACTCGTCTCTACGACAATTAG CATCGTGGATCCCGAAGACGCCCCGATTCTGGCAGAGGCACTCAATGAAG TCCTAGCCAACAAAACCACCATCGGGGATTCTGAACCGGACAGTGGGAAG CTCGTGAAGCTTCGGGTATCTTGCGGCAGCATTTCCTGCAGCGCGAGTAT GTCTATGGTGATCGGCAGCCAGGGACTGGTCGTTGTCACTCGTCTCTACG ACAATTAG back to top
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