mRNA_E-siliculosus-1a_F_contig10949.654.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig10949.654.1
Unique NamemRNA_E-siliculosus-1a_F_contig10949.654.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig10949.654.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig10949contigE-siliculosus-1a_F_contig10949:1246..2077 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size429
Model size832
Exons1
Hectar predicted targeting categoryother localisation
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig10949.654.1prot_E-siliculosus-1a_F_contig10949.654.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig10949 1350..1778 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927597.680131-UTR-E-siliculosus-1a_F_contig10949:1245..13491622927597.680131-UTR-E-siliculosus-1a_F_contig10949:1245..1349Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig10949 1246..1349 +
1696318604.00224-UTR-E-siliculosus-1a_F_contig10949:1245..13491696318604.00224-UTR-E-siliculosus-1a_F_contig10949:1245..1349Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig10949 1246..1349 +
1622927597.7041707-UTR-E-siliculosus-1a_F_contig10949:1778..20771622927597.7041707-UTR-E-siliculosus-1a_F_contig10949:1778..2077Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig10949 1779..2077 +
1696318604.0182729-UTR-E-siliculosus-1a_F_contig10949:1778..20771696318604.0182729-UTR-E-siliculosus-1a_F_contig10949:1778..2077Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig10949 1779..2077 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927597.6921022-CDS-E-siliculosus-1a_F_contig10949:1349..17781622927597.6921022-CDS-E-siliculosus-1a_F_contig10949:1349..1778Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig10949 1350..1778 +
1696318604.0101788-CDS-E-siliculosus-1a_F_contig10949:1349..17781696318604.0101788-CDS-E-siliculosus-1a_F_contig10949:1349..1778Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig10949 1350..1778 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig10949.654.1

>prot_E-siliculosus-1a_F_contig10949.654.1 ID=prot_E-siliculosus-1a_F_contig10949.654.1|Name=mRNA_E-siliculosus-1a_F_contig10949.654.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=143bp
MKCVTLTLTSVMQHCCVLESHSLNLIAIIAQHTHRYHHYCVYHAPTVHAC
TPTPTYYTPGERPHAKNSRCCLVEGNRWALNLSPYDDRGSTQRSPHNEKK
KPHDDLFLQTYRTSNPTTPSYYPLRRHAPVQVFVCVCSTIEC*
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mRNA from alignment at E-siliculosus-1a_F_contig10949:1246..2077+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig10949.654.1 ID=mRNA_E-siliculosus-1a_F_contig10949.654.1|Name=mRNA_E-siliculosus-1a_F_contig10949.654.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=832bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig10949:1246..2077+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
CGGGCCAAAGTCCTTTTTTCATTATGTTAGTTGCAACTCAGAAAAGAGGC
GAGCTCGTAGAGAAAGCTCAGCTGTAGGCGTTCCGATCATCACACTCGCT
TCAGATGAAGTGTGTCACACTAACCTTGACCAGCGTGATGCAACATTGTT
GTGTCCTCGAAAGCCACAGTTTGAATCTAATCGCCATTATCGCACAACAC
ACCCATCGATATCACCATTATTGCGTCTATCATGCACCTACCGTACATGC
GTGCACGCCAACCCCGACATACTATACCCCGGGGGAACGTCCGCACGCCA
AGAACTCGAGATGTTGTCTCGTAGAAGGGAACAGGTGGGCCCTTAACCTG
TCGCCCTATGATGATAGAGGCAGCACTCAACGAAGCCCACACAACGAAAA
AAAAAAACCACACGACGATCTGTTTTTACAGACCTACAGAACATCGAATC
CGACCACGCCTTCCTACTACCCCCTTCGCCGTCATGCACCAGTACAGGTG
TTCGTGTGTGTGTGCTCTACGATTGAGTGCTGAGTCTAAGTGCACAAGGC
ACGTCCTCTTCCTCTGCGGTTGTTGCCAGTTCCCACACCCAACTAAGTGC
CATGCAAGAGCTTGAACGGATCCATCCTCTCGAGTTTCTCCCCCTCCCTC
CCTCCTCTCGATGCTCTAAACAGCTAGGGCATGCAAAACACAAGTACACC
TCTCCCCGACCTCCCCTTTCCCACAGTCCAACTCGTGTACATCCCGCATA
AAAAAACTGGACTACCAAGAAAATCACCCGTGACATCGCGTAGTAGACTC
GCAACGTCTTCCCATACAATTGTAGTTCGTTA
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig10949:1246..2077+

>mRNA_E-siliculosus-1a_F_contig10949.654.1 ID=mRNA_E-siliculosus-1a_F_contig10949.654.1|Name=mRNA_E-siliculosus-1a_F_contig10949.654.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=858bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig10949:1246..2077+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGAAGTGTGTCACACTAACCTTGACCAGCGTGATGCAACATTGTTGTGT
CCTCGAAAGCCACAGTTTGAATCTAATCGCCATTATCGCACAACACACCC
ATCGATATCACCATTATTGCGTCTATCATGCACCTACCGTACATGCGTGC
ACGCCAACCCCGACATACTATACCCCGGGGGAACGTCCGCACGCCAAGAA
CTCGAGATGTTGTCTCGTAGAAGGGAACAGGTGGGCCCTTAACCTGTCGC
CCTATGATGATAGAGGCAGCACTCAACGAAGCCCACACAACGAAAAAAAA
AAACCACACGACGATCTGTTTTTACAGACCTACAGAACATCGAATCCGAC
CACGCCTTCCTACTACCCCCTTCGCCGTCATGCACCAGTACAGGTGTTCG
TGTGTGTGTGCTCTACGATTGAGTGCTGAATGAAGTGTGTCACACTAACC
TTGACCAGCGTGATGCAACATTGTTGTGTCCTCGAAAGCCACAGTTTGAA
TCTAATCGCCATTATCGCACAACACACCCATCGATATCACCATTATTGCG
TCTATCATGCACCTACCGTACATGCGTGCACGCCAACCCCGACATACTAT
ACCCCGGGGGAACGTCCGCACGCCAAGAACTCGAGATGTTGTCTCGTAGA
AGGGAACAGGTGGGCCCTTAACCTGTCGCCCTATGATGATAGAGGCAGCA
CTCAACGAAGCCCACACAACGAAAAAAAAAAACCACACGACGATCTGTTT
TTACAGACCTACAGAACATCGAATCCGACCACGCCTTCCTACTACCCCCT
TCGCCGTCATGCACCAGTACAGGTGTTCGTGTGTGTGTGCTCTACGATTG
AGTGCTGA
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