mRNA_E-siliculosus-1a_F_contig100.63.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig100.63.1
Unique NamemRNA_E-siliculosus-1a_F_contig100.63.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig100.63.1 vs. uniprot
Match: A0A6H5KMW4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMW4_9PHAE)

HSP 1 Score: 130 bits (326), Expect = 5.200e-35
Identity = 63/63 (100.00%), Postives = 63/63 (100.00%), Query Frame = 1 
Query:    1 VNKKIFVRGLPWETNDQSLRAVFEQYGEIAEATVVMDKMTQKSKGYGFVTFKSMDGAHAALEN 189
            VNKKIFVRGLPWETNDQSLRAVFEQYGEIAEATVVMDKMTQKSKGYGFVTFKSMDGAHAALEN
Sbjct:   61 VNKKIFVRGLPWETNDQSLRAVFEQYGEIAEATVVMDKMTQKSKGYGFVTFKSMDGAHAALEN 123
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BLAST of mRNA_E-siliculosus-1a_F_contig100.63.1 vs. uniprot
Match: D7FN41_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FN41_ECTSI)

HSP 1 Score: 130 bits (326), Expect = 2.420e-34
Identity = 63/63 (100.00%), Postives = 63/63 (100.00%), Query Frame = 1 
Query:    1 VNKKIFVRGLPWETNDQSLRAVFEQYGEIAEATVVMDKMTQKSKGYGFVTFKSMDGAHAALEN 189
            VNKKIFVRGLPWETNDQSLRAVFEQYGEIAEATVVMDKMTQKSKGYGFVTFKSMDGAHAALEN
Sbjct:  161 VNKKIFVRGLPWETNDQSLRAVFEQYGEIAEATVVMDKMTQKSKGYGFVTFKSMDGAHAALEN 223
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BLAST of mRNA_E-siliculosus-1a_F_contig100.63.1 vs. uniprot
Match: A0A0C9S8C9_9SPER (TSA: Wollemia nobilis Ref_Wollemi_Transcript_11558_1868 transcribed RNA sequence n=3 Tax=Araucariaceae TaxID=25664 RepID=A0A0C9S8C9_9SPER)

HSP 1 Score: 88.6 bits (218), Expect = 3.910e-19
Identity = 40/61 (65.57%), Postives = 51/61 (83.61%), Query Frame = 1 
Query:    4 NKKIFVRGLPWETNDQSLRAVFEQYGEIAEATVVMDKMTQKSKGYGFVTFKSMDGAHAALE 186
            ++KIFVRGL W+T+ ++L++VF QYGE+ E TV+MDK T KSKGYGFVTFK MDGA  AL+
Sbjct:   97 HRKIFVRGLGWDTSSEALKSVFSQYGELEECTVIMDKGTGKSKGYGFVTFKHMDGAKRALK 157
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BLAST of mRNA_E-siliculosus-1a_F_contig100.63.1 vs. uniprot
Match: H9VN61_PINTA (RRM domain-containing protein (Fragment) n=4 Tax=cellular organisms TaxID=131567 RepID=H9VN61_PINTA)

HSP 1 Score: 82.0 bits (201), Expect = 1.700e-18
Identity = 36/55 (65.45%), Postives = 46/55 (83.64%), Query Frame = 1 
Query:    4 NKKIFVRGLPWETNDQSLRAVFEQYGEIAEATVVMDKMTQKSKGYGFVTFKSMDG 168
            ++KIFVRGL W+T  ++L++VF QYGE+ E TV++DK T KSKGYGFVTFK MDG
Sbjct:   83 HRKIFVRGLGWDTTSEALKSVFSQYGELEECTVIVDKGTGKSKGYGFVTFKHMDG 137
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BLAST of mRNA_E-siliculosus-1a_F_contig100.63.1 vs. uniprot
Match: A0A2K1L9M1_PHYPA (Uncharacterized protein n=2 Tax=Physcomitrium patens TaxID=3218 RepID=A0A2K1L9M1_PHYPA)

HSP 1 Score: 86.3 bits (212), Expect = 1.980e-18
Identity = 38/62 (61.29%), Postives = 49/62 (79.03%), Query Frame = 1 
Query:    1 VNKKIFVRGLPWETNDQSLRAVFEQYGEIAEATVVMDKMTQKSKGYGFVTFKSMDGAHAALE 186
            V++K+FVRGL WET+  +LR  FEQYGE+ EA V+ DK T KS+G+GF+TFK MD AH AL+
Sbjct:   92 VHRKLFVRGLAWETSSMALREAFEQYGEVEEACVITDKGTGKSRGFGFITFKHMDSAHRALK 153
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BLAST of mRNA_E-siliculosus-1a_F_contig100.63.1 vs. uniprot
Match: A0A6P6S7K8_COFAR (UBP1-associated protein 2C-like n=2 Tax=Coffea arabica TaxID=13443 RepID=A0A6P6S7K8_COFAR)

HSP 1 Score: 85.9 bits (211), Expect = 3.620e-18
Identity = 37/60 (61.67%), Postives = 49/60 (81.67%), Query Frame = 1 
Query:    7 KKIFVRGLPWETNDQSLRAVFEQYGEIAEATVVMDKMTQKSKGYGFVTFKSMDGAHAALE 186
            +K+F+RGL WET    LRA+F QYG++ EA V++DK+T KSKGYGF+TFK +DGA AAL+
Sbjct:   78 RKLFIRGLGWETTTDKLRALFSQYGDLEEAVVILDKVTGKSKGYGFITFKHIDGAMAALK 137
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BLAST of mRNA_E-siliculosus-1a_F_contig100.63.1 vs. uniprot
Match: C0PTL4_PICSI (Uncharacterized protein n=1 Tax=Picea sitchensis TaxID=3332 RepID=C0PTL4_PICSI)

HSP 1 Score: 85.9 bits (211), Expect = 3.630e-18
Identity = 39/60 (65.00%), Postives = 49/60 (81.67%), Query Frame = 1 
Query:    7 KKIFVRGLPWETNDQSLRAVFEQYGEIAEATVVMDKMTQKSKGYGFVTFKSMDGAHAALE 186
            +K+FVRGL W+TN +SL+A+F Q+GE+ E  V+MDK T KSKGYGFVTFK MDGA  AL+
Sbjct:   64 RKLFVRGLGWDTNTESLKALFSQFGELEEGVVIMDKNTGKSKGYGFVTFKHMDGALNALK 123
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BLAST of mRNA_E-siliculosus-1a_F_contig100.63.1 vs. uniprot
Match: A0A068UBW6_COFCA (Uncharacterized protein n=1 Tax=Coffea canephora TaxID=49390 RepID=A0A068UBW6_COFCA)

HSP 1 Score: 85.9 bits (211), Expect = 3.670e-18
Identity = 37/60 (61.67%), Postives = 49/60 (81.67%), Query Frame = 1 
Query:    7 KKIFVRGLPWETNDQSLRAVFEQYGEIAEATVVMDKMTQKSKGYGFVTFKSMDGAHAALE 186
            +K+F+RGL WET    LRA+F QYG++ EA V++DK+T KSKGYGF+TFK +DGA AAL+
Sbjct:   78 RKLFIRGLGWETTTDKLRALFSQYGDLEEAVVILDKVTGKSKGYGFITFKHIDGAMAALK 137
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BLAST of mRNA_E-siliculosus-1a_F_contig100.63.1 vs. uniprot
Match: A0A0C9QX59_9SPER (TSA: Wollemia nobilis Ref_Wollemi_Transcript_1845_1572 transcribed RNA sequence n=2 Tax=Araucariaceae TaxID=25664 RepID=A0A0C9QX59_9SPER)

HSP 1 Score: 84.7 bits (208), Expect = 7.110e-18
Identity = 39/61 (63.93%), Postives = 48/61 (78.69%), Query Frame = 1 
Query:    4 NKKIFVRGLPWETNDQSLRAVFEQYGEIAEATVVMDKMTQKSKGYGFVTFKSMDGAHAALE 186
            ++K+FVRGL WET+ Q+L A FEQYGEI E  V+MDK T KS+G+GFVTFK MD A  AL+
Sbjct:   75 HRKLFVRGLAWETSSQTLCAAFEQYGEIEEGAVIMDKNTGKSRGFGFVTFKHMDSAQRALK 135
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BLAST of mRNA_E-siliculosus-1a_F_contig100.63.1 vs. uniprot
Match: UPI000C1D474D (UBP1-associated protein 2C-like n=1 Tax=Olea europaea var. sylvestris TaxID=158386 RepID=UPI000C1D474D)

HSP 1 Score: 85.1 bits (209), Expect = 7.400e-18
Identity = 38/60 (63.33%), Postives = 47/60 (78.33%), Query Frame = 1 
Query:    7 KKIFVRGLPWETNDQSLRAVFEQYGEIAEATVVMDKMTQKSKGYGFVTFKSMDGAHAALE 186
            +K+F+RGL WET    LRAVF  YGE+AEA V++DK T KSKGYGF+TFK +DGA  AL+
Sbjct:   73 RKLFIRGLGWETTTDGLRAVFSSYGELAEAVVILDKATGKSKGYGFITFKHVDGAVLALK 132
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig100.63.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KMW4_9PHAE5.200e-35100.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FN41_ECTSI2.420e-34100.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A0C9S8C9_9SPER3.910e-1965.57TSA: Wollemia nobilis Ref_Wollemi_Transcript_11558... [more]
H9VN61_PINTA1.700e-1865.45RRM domain-containing protein (Fragment) n=4 Tax=c... [more]
A0A2K1L9M1_PHYPA1.980e-1861.29Uncharacterized protein n=2 Tax=Physcomitrium pate... [more]
A0A6P6S7K8_COFAR3.620e-1861.67UBP1-associated protein 2C-like n=2 Tax=Coffea ara... [more]
C0PTL4_PICSI3.630e-1865.00Uncharacterized protein n=1 Tax=Picea sitchensis T... [more]
A0A068UBW6_COFCA3.670e-1861.67Uncharacterized protein n=1 Tax=Coffea canephora T... [more]
A0A0C9QX59_9SPER7.110e-1863.93TSA: Wollemia nobilis Ref_Wollemi_Transcript_1845_... [more]
UPI000C1D474D7.400e-1863.33UBP1-associated protein 2C-like n=1 Tax=Olea europ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig100contigE-siliculosus-1a_F_contig100:87448..88058 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start0
Stop0
Cds size189
Model size189
Exons2
Ec32 orthologEc-06_008310.1
Ec32 ortholog descriptionUncharacterized protein
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0003730,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005849,GO:0006139,GO:0006378,GO:0006379,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0010467,GO:0016070,GO:0016071,GO:0031123,GO:0031124,GO:0031974,GO:0031981,GO:0032991,GO:0034641,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043631,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044451,GO:0044464,GO:0046483,GO:0070013,GO:0071704,GO:0090304,GO:0090305,GO:0090501,GO:0097159,GO:1901360,GO:1901363
KEGG Pathwayko03040,map03040
KEGG koko:K12741
BRITEko00000,ko00001,ko03019,ko03041
Best eggNOG OGNA|NA|NA
Best tax levelStreptophyta
COG Functional cat.A
EggNOG OGs37M3X@33090,3GFRS@35493,KOG0118@1,KOG0118@2759
EggNOG free text desc.UBP1-associated protein 2C-like
Seed eggNOG ortholog3218.PP1S59_30V6.1
Seed ortholog evalue4.3e-15
Seed ortholog score86.7
Taxonomic scopeViridiplantae
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927506.0499659-CDS-E-siliculosus-1a_F_contig100:87447..875401622927506.0499659-CDS-E-siliculosus-1a_F_contig100:87447..87540Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig100 87448..87540 +
1696318557.0418243-CDS-E-siliculosus-1a_F_contig100:87447..875401696318557.0418243-CDS-E-siliculosus-1a_F_contig100:87447..87540Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig100 87448..87540 +
1622927506.0716116-CDS-E-siliculosus-1a_F_contig100:87962..880581622927506.0716116-CDS-E-siliculosus-1a_F_contig100:87962..88058Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig100 87963..88058 +
1696318557.062432-CDS-E-siliculosus-1a_F_contig100:87962..880581696318557.062432-CDS-E-siliculosus-1a_F_contig100:87962..88058Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig100 87963..88058 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig100.63.1prot_E-siliculosus-1a_F_contig100.63.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig100 87448..88058 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig100.63.1

>prot_E-siliculosus-1a_F_contig100.63.1 ID=prot_E-siliculosus-1a_F_contig100.63.1|Name=mRNA_E-siliculosus-1a_F_contig100.63.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=63bp
VNKKIFVRGLPWETNDQSLRAVFEQYGEIAEATVVMDKMTQKSKGYGFVT
FKSMDGAHAALEN
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mRNA from alignment at E-siliculosus-1a_F_contig100:87448..88058+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig100.63.1 ID=mRNA_E-siliculosus-1a_F_contig100.63.1|Name=mRNA_E-siliculosus-1a_F_contig100.63.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=611bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig100:87448..88058+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
GTGAACAAGAAAATTTTCGTTCGCGGTCTACCATGGGAAACCAACGACCA
GTCCCTTCGTGCAGTCTTCGAGCAATACGGAGAGATCGCCGAGGTAGGCC
CCGCTGCATGAGAAACGTGGTATTAACAGCATGCATCTATATATTGTGCG
AGTCGGCTCCCCCCCAGGGCTCGTAGTTTTTTTCCCCTGATAGTCAGCGA
CTATCGGCCCTCTCTCCCATCTTGCGATTTTTTTGCATTCCCCCAGGATT
AGAGTTTGAGAATTTGGAATAGCAACTCCTCTGTCGTTCATCGCAAGGCA
CTTCCTGTCTTCGTTTCGGCCCACCTGAACGACGCTGGCGCTTCTTTAGT
TGTGATTGTTGTTGCATCACAAGATGCGGCTCTCGGCTGGTTGTATTCGT
TGTTTTTATGTCACTACAGGTAGTGTCAAAAGACTAAGATGATGCTCGTT
CCTTTGGATAACTGGTTGACACGGACTCTTACTTTTTTCCGCCTGCTCGG
TGACTTGCGCGCTAGGCCACCGTGGTGATGGACAAGATGACACAGAAATC
GAAGGGGTACGGCTTTGTCACCTTCAAGAGCATGGACGGCGCTCATGCCG
CCCTGGAAAAT
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig100:87448..88058+

>mRNA_E-siliculosus-1a_F_contig100.63.1 ID=mRNA_E-siliculosus-1a_F_contig100.63.1|Name=mRNA_E-siliculosus-1a_F_contig100.63.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=378bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig100:87448..88058+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
GTGAACAAGAAAATTTTCGTTCGCGGTCTACCATGGGAAACCAACGACCA
GTCCCTTCGTGCAGTCTTCGAGCAATACGGAGAGATCGCCGAGGTGAACA
AGAAAATTTTCGTTCGCGGTCTACCATGGGAAACCAACGACCAGTCCCTT
CGTGCAGTCTTCGAGCAATACGGAGAGATCGCCGAGGCCACCGTGGTGAT
GGACAAGATGACACAGAAATCGAAGGGGTACGGCTTTGTCACCTTCAAGA
GCATGGACGGCGCTCATGCCGCCCTGGAAAATGCCACCGTGGTGATGGAC
AAGATGACACAGAAATCGAAGGGGTACGGCTTTGTCACCTTCAAGAGCAT
GGACGGCGCTCATGCCGCCCTGGAAAAT
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