mRNA_E-siliculosus-1a_F_contig10903.628.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig10903.628.1
Unique NamemRNA_E-siliculosus-1a_F_contig10903.628.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig10903.628.1 vs. uniprot
Match: D7G1E3_ECTSI (Uncharacterized protein n=3 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1E3_ECTSI)

HSP 1 Score: 135 bits (340), Expect = 1.180e-34
Identity = 81/84 (96.43%), Postives = 81/84 (96.43%), Query Frame = -2 
Query:  410 ADLSSVRSAKAAETAPGSASSQPSSRRPSLPGFSSMDDGGGAASGAAATASPGVTAPRASSTRRVLAEFGDISSSARPAAASSF 661
            ADLSSVRSAKAAETAP SASSQPSSRRPSLPGFSSMDDGGGAASGAAATASPGVTAPRASSTRRV AEFGDISSSARP AASSF
Sbjct:   78 ADLSSVRSAKAAETAPVSASSQPSSRRPSLPGFSSMDDGGGAASGAAATASPGVTAPRASSTRRVSAEFGDISSSARPVAASSF 161
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BLAST of mRNA_E-siliculosus-1a_F_contig10903.628.1 vs. uniprot
Match: D7FLB4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLB4_ECTSI)

HSP 1 Score: 119 bits (297), Expect = 1.790e-27
Identity = 68/69 (98.55%), Postives = 68/69 (98.55%), Query Frame = -2 
Query:  410 PGSASSQPSSRRPSLPGFSSMDDGGGAASGAAATASPGVTAPRASSTRRVLAEFGDISSSARPAAASSF 616
            PGSASSQPSSRRPSLPGFSSMDDGGGAASGAAATASPGVTAPRASSTRRV AEFGDISSSARPAAASSF
Sbjct:   91 PGSASSQPSSRRPSLPGFSSMDDGGGAASGAAATASPGVTAPRASSTRRVSAEFGDISSSARPAAASSF 159
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BLAST of mRNA_E-siliculosus-1a_F_contig10903.628.1 vs. uniprot
Match: D8LNI2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNI2_ECTSI)

HSP 1 Score: 55.5 bits (132), Expect = 7.730e-6
Identity = 26/29 (89.66%), Postives = 27/29 (93.10%), Query Frame = -3 
Query:  280 SSMKPENAMASVMGVLGPDVAPRVFIYLM 366
            SSMKPENAMASVMGVLGPD AP VFIYL+
Sbjct:    2 SSMKPENAMASVMGVLGPDAAPHVFIYLL 30
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig10903.628.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7G1E3_ECTSI1.180e-3496.43Uncharacterized protein n=3 Tax=Ectocarpus silicul... [more]
D7FLB4_ECTSI1.790e-2798.55Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LNI2_ECTSI7.730e-689.66Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig10903contigE-siliculosus-1a_F_contig10903:920..2136 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size414
Model size692
Exons2
Hectar predicted targeting categoryother localisation
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig10903.628.1prot_E-siliculosus-1a_F_contig10903.628.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig10903 1035..1973 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927592.8077872-UTR-E-siliculosus-1a_F_contig10903:919..10341622927592.8077872-UTR-E-siliculosus-1a_F_contig10903:919..1034Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig10903 920..1034 -
1696318601.9806764-UTR-E-siliculosus-1a_F_contig10903:919..10341696318601.9806764-UTR-E-siliculosus-1a_F_contig10903:919..1034Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig10903 920..1034 -
1622927592.8518846-UTR-E-siliculosus-1a_F_contig10903:1973..21361622927592.8518846-UTR-E-siliculosus-1a_F_contig10903:1973..2136Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig10903 1974..2136 -
1696318602.0099795-UTR-E-siliculosus-1a_F_contig10903:1973..21361696318602.0099795-UTR-E-siliculosus-1a_F_contig10903:1973..2136Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig10903 1974..2136 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927592.819903-CDS-E-siliculosus-1a_F_contig10903:1034..13291622927592.819903-CDS-E-siliculosus-1a_F_contig10903:1034..1329Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig10903 1035..1329 -
1696318601.9903016-CDS-E-siliculosus-1a_F_contig10903:1034..13291696318601.9903016-CDS-E-siliculosus-1a_F_contig10903:1034..1329Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig10903 1035..1329 -
1622927592.8369508-CDS-E-siliculosus-1a_F_contig10903:1854..19731622927592.8369508-CDS-E-siliculosus-1a_F_contig10903:1854..1973Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig10903 1855..1973 -
1696318602.000209-CDS-E-siliculosus-1a_F_contig10903:1854..19731696318602.000209-CDS-E-siliculosus-1a_F_contig10903:1854..1973Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig10903 1855..1973 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig10903.628.1

>prot_E-siliculosus-1a_F_contig10903.628.1 ID=prot_E-siliculosus-1a_F_contig10903.628.1|Name=mRNA_E-siliculosus-1a_F_contig10903.628.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=138bp
MGMLKPRLSVQTQPSIILGLNGEHKTSMYTRLLLVSPVGMRYMKTRGATS
GPKTPMTLAMAFSGFMDDDTVKAVPSPWLTPPKAGGSGRARGRRNVAELR
QHPSSGGGTRRRHARRRRGRGTAGCAATVVHTGKSWQ*
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mRNA from alignment at E-siliculosus-1a_F_contig10903:920..2136-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig10903.628.1 ID=mRNA_E-siliculosus-1a_F_contig10903.628.1|Name=mRNA_E-siliculosus-1a_F_contig10903.628.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=1217bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig10903:920..2136- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ACTGCAGGAGTCGCCGCGGTCTCCGCGCTGCCGCCGAACATGGGGGAGAA
ACCCAGCTGCACCTGCGAGATGCACATCGTCCGTATAGCACAAGATCGGG
GGTGGAAAATCCAGCGACGCGTGAGAGAGAAGTCGTGGGTTCTATGCAAT
TTAGTCTGCGACGATGGGAATGCTGAAACCACGCTTGTCGGTGCAAACAC
AACCATCAATCATCCTCGGGCTGAACGGCGAGCACAAGACATCAATGTAC
ACAAGACTCCTACTCGTGTCACCAGTCGGCATGTACGATGATCCTGGGTT
ACCAAGGATACATATAAGTTAGTAGTTGTGGTTCCACCTCCACACGACGC
CAAGCCCCTTATGTACCGCCGTAGGTGACACAAGATACCGCACCTCGTGC
TGCTGTGAACAATATCGATATTTGCCACACAGTAACTGGCACAACCAAAA
CGGCGGCATGAACCATCTCGTCAAGAGCTCTCCGAAAACGTGGCGTTTCA
TTTCTGCATGTTCATGGTCCTGGACTGAGGTTAGCTTATAATCGGCCCAG
GGGTTGTGGCATATTGTGCCACCTACGGAAGGTGGTGCGTCTATATTATA
GACCGACCGGATGGTGGGAAACTCACGATTCGAGGACTTCGGCGGCAAAA
TTTCAGTCAACACCACAAAAAAATGCACCCGCATCTACGCAAGAAACACA
AAAGCACAAGCTTAGATTATAACGAGACGTGCGTATGTGTTTTGCAACAC
TCTCTCTGACAGGGACACAAAAATTCAACTCACATGTTCCGCCATGTGCT
CTTGCAGGAGGTATATGAAGACGCGTGGGGCCACGTCTGGGCCCAAAACA
CCCATGACGCTAGCCATGGCGTTTTCAGGCTTCATGGATGACGACACCGT
GAAAGCTGTGCCGTCGCCGTGGCTGACACCTCCAAAAGCTGGAGGCAGCG
GCAGGGCGCGCGGACGAAGAAATGTCGCCGAACTCCGCCAACACCCTTCG
AGTGGAGGAGGCACGCGGCGCCGTCACGCCAGGCGACGCCGTGGCCGCGG
CACCGCTGGCTGCGCCGCCACCGTCGTCCATACTGGAAAATCCTGGCAGT
GATGGCCGGCGGCTCGACGGCTGCGAAGATGCCGACCCAGGAGCCGTTTC
GGCAGCCTTAGCGCTCCTGACGGACGAGAGATCCGCCTCTTGCTCTTCCT
CCTCGGGCTCCTCCTCC
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig10903:920..2136-

>mRNA_E-siliculosus-1a_F_contig10903.628.1 ID=mRNA_E-siliculosus-1a_F_contig10903.628.1|Name=mRNA_E-siliculosus-1a_F_contig10903.628.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=828bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig10903:920..2136- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGGGAATGCTGAAACCACGCTTGTCGGTGCAAACACAACCATCAATCAT
CCTCGGGCTGAACGGCGAGCACAAGACATCAATGTACACAAGACTCCTAC
TCGTGTCACCAGTCGGCATATGGGAATGCTGAAACCACGCTTGTCGGTGC
AAACACAACCATCAATCATCCTCGGGCTGAACGGCGAGCACAAGACATCA
ATGTACACAAGACTCCTACTCGTGTCACCAGTCGGCATGAGGTATATGAA
GACGCGTGGGGCCACGTCTGGGCCCAAAACACCCATGACGCTAGCCATGG
CGTTTTCAGGCTTCATGGATGACGACACCGTGAAAGCTGTGCCGTCGCCG
TGGCTGACACCTCCAAAAGCTGGAGGCAGCGGCAGGGCGCGCGGACGAAG
AAATGTCGCCGAACTCCGCCAACACCCTTCGAGTGGAGGAGGCACGCGGC
GCCGTCACGCCAGGCGACGCCGTGGCCGCGGCACCGCTGGCTGCGCCGCC
ACCGTCGTCCATACTGGAAAATCCTGGCAGTGAGAGGTATATGAAGACGC
GTGGGGCCACGTCTGGGCCCAAAACACCCATGACGCTAGCCATGGCGTTT
TCAGGCTTCATGGATGACGACACCGTGAAAGCTGTGCCGTCGCCGTGGCT
GACACCTCCAAAAGCTGGAGGCAGCGGCAGGGCGCGCGGACGAAGAAATG
TCGCCGAACTCCGCCAACACCCTTCGAGTGGAGGAGGCACGCGGCGCCGT
CACGCCAGGCGACGCCGTGGCCGCGGCACCGCTGGCTGCGCCGCCACCGT
CGTCCATACTGGAAAATCCTGGCAGTGA
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