mRNA_E-siliculosus-1a_F_contig100.62.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig100.62.1
Unique NamemRNA_E-siliculosus-1a_F_contig100.62.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig100.62.1 vs. uniprot
Match: D7FN40_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FN40_ECTSI)

HSP 1 Score: 121 bits (304), Expect = 6.080e-35
Identity = 65/67 (97.01%), Postives = 65/67 (97.01%), Query Frame = 1 
Query:    1 MAEQTFDKKRRLDEDGNASAFAENTAESRKEKLETWLKPLDNEQLVKLLLDMYVMFRASAVLVCACV 201
            MAEQTFDKKRRLDEDGNASAFAENTAESRKEKLETWLKPLDNEQLVKLLLDMYVMF AS VLVCACV
Sbjct:    1 MAEQTFDKKRRLDEDGNASAFAENTAESRKEKLETWLKPLDNEQLVKLLLDMYVMFCASCVLVCACV 67
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BLAST of mRNA_E-siliculosus-1a_F_contig100.62.1 vs. uniprot
Match: D7FN41_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FN41_ECTSI)

HSP 1 Score: 97.8 bits (242), Expect = 2.360e-22
Identity = 51/51 (100.00%), Postives = 51/51 (100.00%), Query Frame = 1 
Query:    1 MAEQTFDKKRRLDEDGNASAFAENTAESRKEKLETWLKPLDNEQLVKLLLD 153
            MAEQTFDKKRRLDEDGNASAFAENTAESRKEKLETWLKPLDNEQLVKLLLD
Sbjct:   90 MAEQTFDKKRRLDEDGNASAFAENTAESRKEKLETWLKPLDNEQLVKLLLD 140
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BLAST of mRNA_E-siliculosus-1a_F_contig100.62.1 vs. uniprot
Match: A0A6H5KMW4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMW4_9PHAE)

HSP 1 Score: 71.2 bits (173), Expect = 5.790e-13
Identity = 38/41 (92.68%), Postives = 39/41 (95.12%), Query Frame = 2 
Query:   38 MRTETPRRSRKTQQRVARRSWRPGSSPLTTSSWSSSSLTCT 160
            M+TETPRRS  TQQRVARRSWRPGSSPLTTSSWSSSSLTCT
Sbjct:    1 MKTETPRRSPTTQQRVARRSWRPGSSPLTTSSWSSSSLTCT 41
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig100.62.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FN40_ECTSI6.080e-3597.01Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FN41_ECTSI2.360e-22100.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KMW4_9PHAE5.790e-1392.68Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig100contigE-siliculosus-1a_F_contig100:85732..85932 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop0
Cds size201
Model size201
Exons1
Ec32 orthologEc-06_008300.1
Ec32 ortholog descriptionexpressed unknown protein
Hectar predicted targeting categoryother localisation
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927506.0025554-CDS-E-siliculosus-1a_F_contig100:85731..859321622927506.0025554-CDS-E-siliculosus-1a_F_contig100:85731..85932Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig100 85732..85932 +
1696318557.0298867-CDS-E-siliculosus-1a_F_contig100:85731..859321696318557.0298867-CDS-E-siliculosus-1a_F_contig100:85731..85932Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig100 85732..85932 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig100.62.1prot_E-siliculosus-1a_F_contig100.62.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig100 85732..85932 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig100.62.1

>prot_E-siliculosus-1a_F_contig100.62.1 ID=prot_E-siliculosus-1a_F_contig100.62.1|Name=mRNA_E-siliculosus-1a_F_contig100.62.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=67bp
MAEQTFDKKRRLDEDGNASAFAENTAESRKEKLETWLKPLDNEQLVKLLL
DMYVMFRASAVLVCACV
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mRNA from alignment at E-siliculosus-1a_F_contig100:85732..85932+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig100.62.1 ID=mRNA_E-siliculosus-1a_F_contig100.62.1|Name=mRNA_E-siliculosus-1a_F_contig100.62.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=201bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig100:85732..85932+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGGCGGAACAAACCTTTGACAAGAAGAGGCGGTTGGATGAGGACGGAAA
CGCCTCGGCGTTCGCGGAAAACACAGCAGAGAGTCGCAAGGAGAAGCTGG
AGACCTGGCTCAAGCCCCTTGACAACGAGCAGCTGGTCAAGCTCCTCCTT
GACATGTACGTTATGTTCCGCGCCAGTGCTGTCCTTGTGTGTGCATGTGT
G
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig100:85732..85932+

>mRNA_E-siliculosus-1a_F_contig100.62.1 ID=mRNA_E-siliculosus-1a_F_contig100.62.1|Name=mRNA_E-siliculosus-1a_F_contig100.62.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=402bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig100:85732..85932+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGGCGGAACAAACCTTTGACAAGAAGAGGCGGTTGGATGAGGACGGAAA
CGCCTCGGCGTTCGCGGAAAACACAGCAGAGAGTCGCAAGGAGAAGCTGG
AGACCTGGCTCAAGCCCCTTGACAACGAGCAGCTGGTCAAGCTCCTCCTT
GACATGTACGTTATGTTCCGCGCCAGTGCTGTCCTTGTGTGTGCATGTGT
GATGGCGGAACAAACCTTTGACAAGAAGAGGCGGTTGGATGAGGACGGAA
ACGCCTCGGCGTTCGCGGAAAACACAGCAGAGAGTCGCAAGGAGAAGCTG
GAGACCTGGCTCAAGCCCCTTGACAACGAGCAGCTGGTCAAGCTCCTCCT
TGACATGTACGTTATGTTCCGCGCCAGTGCTGTCCTTGTGTGTGCATGTG
TG
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