mRNA_E-siliculosus-1a_F_contig109.619.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig109.619.1
Unique NamemRNA_E-siliculosus-1a_F_contig109.619.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig109.619.1 vs. uniprot
Match: D7FKV4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FKV4_ECTSI)

HSP 1 Score: 376 bits (966), Expect = 2.650e-124
Identity = 177/184 (96.20%), Postives = 181/184 (98.37%), Query Frame = 3 
Query:  321 MSSSPFSLAPSRWLVMMDIGREKGTWMPQSWGRSGRRVEVDLLVQFLPGGDMKADVDSPFVDMTVTPGKWSVGAAQGKPRRRPTNSLGSLTSDTCRFWVETDGFGRGDVTIPAGRIYFAVPAWGGKLSRKGLVTVRQRRWLVREESRILGVFGTELLVPDAEGRVPPRAPRPRTPPFPDGFRDG 872
            M SSPFSLAPSRWLVMMDIGREKGTWMPQSWGRSGRRVEVDLL++FLPGGDMKA VDSPFVDMTVTPGKWSVGAAQGKPRRRPTNSLGSLTSDTCRFWVETDGFGRGDVTIPAGRIYFAVPAWGGKLSRKGLVTVRQRRWLVREESRILGVFGTELL+PDAEGR+PPR PRPRTPPFPDGFRDG
Sbjct:    1 MPSSPFSLAPSRWLVMMDIGREKGTWMPQSWGRSGRRVEVDLLLEFLPGGDMKAVVDSPFVDMTVTPGKWSVGAAQGKPRRRPTNSLGSLTSDTCRFWVETDGFGRGDVTIPAGRIYFAVPAWGGKLSRKGLVTVRQRRWLVREESRILGVFGTELLIPDAEGRLPPRTPRPRTPPFPDGFRDG 184
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig109.619.1 vs. uniprot
Match: A0A835Z9I2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z9I2_9STRA)

HSP 1 Score: 150 bits (379), Expect = 1.210e-37
Identity = 79/150 (52.67%), Postives = 99/150 (66.00%), Query Frame = 3 
Query:  342 LAPSRWLVMMDIGREKGTWMPQSWGRSGRRVEVDLLVQFLPGGDM-KADVDSPFVDMTVTPGKWSVGAAQGKPRRRPTNSLGSLTSDTCRFWVETDGFGRGDVTIPAGRIYFAVPAWGGKLSR-KGLVTVRQRRWLVREESRILGVFGTE 785
            L  +R+++  DIGREKGTWMP  WG SG R+ VD+LV+F P G   +  + SPFV   V    WSV  A+G          GSL   T RF ++T G  RGDV+IPAG IY +VPAWG +LSR +G+VTVRQ+RW +REESRILGVF  +
Sbjct:   97 LVGTRYVLSFDIGREKGTWMPPQWGASGARLNVDVLVEFGPSGTFAEVALKSPFVATDVAGIAWSVEGARG---------TGSLQQSTLRFSLQTSGAARGDVSIPAGPIYCSVPAWGARLSRSRGMVTVRQKRWGIREESRILGVFSAQ 237
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig109.619.1 vs. uniprot
Match: A0A7R9Z757_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Chlamydomonas euryale TaxID=1486919 RepID=A0A7R9Z757_9CHLO)

HSP 1 Score: 116 bits (291), Expect = 1.880e-26
Identity = 60/140 (42.86%), Postives = 83/140 (59.29%), Query Frame = 3 
Query:  354 RWLVMMDIGREKGTWMPQSWGRSGRRVEVDLLVQFLPGGDMKADVDSPFVDMTVTPGKWSVGAAQGKPRRRPTNSLGSLTSDTCRFWVETDGFGRGDVTIPAGRIYFAVPAWGGKLSR-KGLVTVRQRRWLVREESRILG 770
            R+ +++DIGREK TWM Q W  SGRR+EV ++ +F  GG +       F  + V+ G W +G                   DT R  ++T GF RGDV++  G ++ AVP WGG LSR KG +TV+Q RWLVR+ESR++G
Sbjct:   11 RYQLVLDIGREKHTWMDQQWAASGRRMEVPIVAEFGRGGVLNVLGVGAFSPLQVSGGSWHIGG------------------DTLRLVLQTGGFARGDVSLAPGPLHVAVPCWGGLLSRDKGTLTVQQTRWLVRKESRLVG 132
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig109.619.1 vs. uniprot
Match: A0A7S3YGE1_9EUKA (Hypothetical protein n=2 Tax=Lotharella globosa TaxID=91324 RepID=A0A7S3YGE1_9EUKA)

HSP 1 Score: 119 bits (299), Expect = 2.840e-26
Identity = 67/180 (37.22%), Postives = 94/180 (52.22%), Query Frame = 3 
Query:  342 LAPSRWLVMMDIGREKGTWMPQSWGRSGRRVEVDLLVQFLPGGDMKADVDSPFVDMTVTPGKWSVGAAQGKPRRRPTNSLGSLTSDTCRFWVETDGFGRGDVTIPAGRIYFAVPAWG---GKLSRKGLVTVRQRRWLVREESRILGVFGTELLVPDAEGRVPPRAPRPRTPPFPDGFRDG 872
            +A SR  +++DIGREK TWMP  W  SGRR+E+ +L +F   GD+ A +  P++DM V  G+W V                    D  RFW+E DGF R DV++P G+++FA   WG   G  S   ++T+  +R+ VR+E R++G F            VP   P P  PP    FR G
Sbjct:  121 IAGSRRRLVLDIGREKNTWMPPQWAASGRRMEIHMLAEFHENGDVSARI-GPYLDMGVHKGRWVVSE-----------------DDVLRFWLEIDGFERFDVSLPKGKLFFACNLWGLLLGNKSTNNILTIVAKRFFVRKEKRMVGTFQAF--------DVPEDDPDPTLPPCRTKFRGG 274
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig109.619.1 vs. uniprot
Match: A0A7S0GY79_9EUKA (Hypothetical protein n=1 Tax=Amorphochlora amoebiformis TaxID=1561963 RepID=A0A7S0GY79_9EUKA)

HSP 1 Score: 114 bits (286), Expect = 1.020e-25
Identity = 59/147 (40.14%), Postives = 89/147 (60.54%), Query Frame = 3 
Query:  339 SLAPSRWLVMMDIGREKGTWMPQSWGRSGRRVEVDLLVQFLPGGDMKADVDSPFVDMTVTPGKWSVGAAQGKPRRRPTNSLGSLTSDTCRFWVETDGFGRGDVTIPAGRIYFAVPAWGGKLS-RKGLVTVRQRRWLVREESRILGVF 776
            SL   R+ +++D+GREK TWMP  W  SGRR+E+ +LV FL  G ++A +  P++DM++  G WS G         P N L        +F +   GF R DV++P G +YF+  +WGG +S R  ++T+R  R+LVR+E R++G F
Sbjct:    6 SLVGMRYRLILDVGREKNTWMPPQWAASGRRMEIHMLVNFLQDGQLEARM-GPYLDMSLKGGTWSKG---------PNNRL--------KFNIAIGGFERFDVSLPEGLLYFSSSSWGGLISERNNIITIRATRFLVRKEWRMVGTF 134
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig109.619.1 vs. uniprot
Match: A0A7S2X7L6_9EUKA (Hypothetical protein n=1 Tax=Lotharella oceanica TaxID=641309 RepID=A0A7S2X7L6_9EUKA)

HSP 1 Score: 107 bits (267), Expect = 6.400e-22
Identity = 53/146 (36.30%), Postives = 81/146 (55.48%), Query Frame = 3 
Query:  351 SRWLVMMDIGREKGTWMPQSWGRSGRRVEVDLLVQFLPGGDMKADVDSPFVDMTVTPGKWSVGAAQGKPRRRPTNSLGSLTSDTCRFWVETDGFGRGDVTIPAGRIYFAVPAWG----GKLSRKGLVTVRQRRWLVREESRILGVF 776
            SR  +++DIGREK TWMP  W  SGRR+E+ +L  F   G + A +   ++DM +  G+W +                    D  +FW+E DGF R DV++P G++YFA   WG     + ++   +T++ RR+ VREE+R +G F
Sbjct:  143 SRRRLVLDIGREKNTWMPPQWAASGRRMEIHMLATFQENGHVSARIGL-YLDMGIHGGEWHI------------------EGDALKFWLEIDGFERFDVSLPKGKLYFACNLWGVVLGNQANKNNRLTIQARRFFVREETRTVGTF 269
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig109.619.1 vs. uniprot
Match: C1FF14_MICCC (Uncharacterized protein n=1 Tax=Micromonas commoda (strain RCC299 / NOUM17 / CCMP2709) TaxID=296587 RepID=C1FF14_MICCC)

HSP 1 Score: 106 bits (265), Expect = 6.200e-21
Identity = 56/151 (37.09%), Postives = 80/151 (52.98%), Query Frame = 3 
Query:  342 LAPSRWLVMMDIGREKGTWMPQSWGRSGRRVEVDLLVQFLPGGDMKADVDSPFVDMTVTPGKWSVGAAQGKPRRRPTNSLGSLTSDTCRFWVETDGFGRGDVTIPAGRIYFAVPAWGGKLSRKGLVTVRQRRWLVREESRILGVFGTELLV 794
            LA +RW + +DIGRE+GTWMP  WG SG RV + + V+    G +       F  MTV+ GKW                   L  D  +F V+T G  +GDVT+P   ++F   AWGG ++ +G + + Q R+  R E R++GVF  E L+
Sbjct:  239 LAGTRWRLTLDIGRERGTWMPPEWGASGFRVILPMAVELGANGVVTPIAIGGFAPMTVSAGKWR------------------LEGDALKFDVKTSGMAKGDVTLPEDSLHFRTAAWGGTMASRGNLMLLQTRFGFRREWRMVGVFKAEPLL 371
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig109.619.1 vs. uniprot
Match: C1MGG1_MICPC (Predicted protein n=2 Tax=Micromonas pusilla TaxID=38833 RepID=C1MGG1_MICPC)

HSP 1 Score: 104 bits (260), Expect = 8.150e-21
Identity = 56/159 (35.22%), Postives = 83/159 (52.20%), Query Frame = 3 
Query:  339 SLAPSRWLVMMDIGREKGTWMPQSWGRSGRRVEVDLLVQFLPGGDMKADVDSPFVDMTVTPGKWSVGAAQGKPRRRPTNSLGSLTSDTCRFWV-ETDGFGRGDVTIPAGR-IYFAVPAWGGKLSRKGLVTVRQRRWLVREESRILGVFGTELLVPDAEG 809
            +L  +RW + +D+GRE+GTWMP SW  SG RV   + ++   GG  +      F+ M ++ G+W                   L  D  +F V  T G  +GDVT+PA   ++F   AWGG +S +G + +RQ RW  R+E R++GVF  E L    +G
Sbjct:  161 ALIGTRWRLTLDVGRERGTWMPPSWAASGVRVIAPIAIELAEGGVTRVVATGAFLPMKLSEGRWR------------------LEGDALKFDVLMTTGMEKGDVTLPANESLHFRASAWGGAVSSRGTLLLRQTRWGFRKEWRMVGVFKAEKLSDGEDG 301
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig109.619.1 vs. uniprot
Match: A0A7S0NI69_MICPS (Hypothetical protein (Fragment) n=1 Tax=Micromonas pusilla TaxID=38833 RepID=A0A7S0NI69_MICPS)

HSP 1 Score: 104 bits (259), Expect = 4.570e-20
Identity = 55/152 (36.18%), Postives = 80/152 (52.63%), Query Frame = 3 
Query:  339 SLAPSRWLVMMDIGREKGTWMPQSWGRSGRRVEVDLLVQFLPGGDMKADVDSPFVDMTVTPGKWSVGAAQGKPRRRPTNSLGSLTSDTCRFWVETDGFGRGDVTIPAGRIYFAVPAWGGKLSRKGLVTVRQRRWLVREESRILGVFGTELLV 794
            +L  +RW + +DIGRE+GTWMP  WG SG RV + + V+    G +       F  MTV+ GKW                   L  D  +F V+T G  +GDVT+P   ++F   AWGG ++ +G + + Q R+  R E R++GVF  E L+
Sbjct:  274 ALVGTRWRLTLDIGRERGTWMPPEWGASGFRVILPVAVELGANGVVTPLAVGGFAPMTVSVGKWR------------------LEGDALKFDVKTSGMAKGDVTLPEDSLHFRTAAWGGTMASRGNLMLLQTRFGFRREWRMVGVFKAEPLL 407
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig109.619.1 vs. uniprot
Match: R1D3K6_EMIHU (Uncharacterized protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1D3K6_EMIHU)

HSP 1 Score: 95.9 bits (237), Expect = 7.690e-19
Identity = 46/131 (35.11%), Postives = 72/131 (54.96%), Query Frame = 3 
Query:  342 LAPSRWLVMMDIGREKGTWMPQSWGRSGRRVEVDLLVQFLPGGDMKADVDSPFVDMTVT---PGKWSVGAAQGKPRRRPTNSLGSLTSDTCRFWVETDGFGRGDVTIPAGRIYFAVPAWGGKLSRKGLVTV 725
            L+ +RW + +D+G E+GTWMP +WGRSG R    + V+F   G+++     P+  +TV+    G+W+  A + K                  FW+   G  R DV + AGR++F+ PAWG +LSR+G  T+
Sbjct:   45 LSGTRWTLSLDVGAERGTWMPPTWGRSGARATPRVRVEFAEDGELRILETGPYDRVTVSWAGAGRWTQPAGREK----------------AEFWLPHTGLARDDVVLEAGRLHFSAPAWGAQLSRRGGTTI 159
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig109.619.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FKV4_ECTSI2.650e-12496.20Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835Z9I2_9STRA1.210e-3752.67Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7R9Z757_9CHLO1.880e-2642.86Hypothetical protein (Fragment) n=1 Tax=Chlamydomo... [more]
A0A7S3YGE1_9EUKA2.840e-2637.22Hypothetical protein n=2 Tax=Lotharella globosa Ta... [more]
A0A7S0GY79_9EUKA1.020e-2540.14Hypothetical protein n=1 Tax=Amorphochlora amoebif... [more]
A0A7S2X7L6_9EUKA6.400e-2236.30Hypothetical protein n=1 Tax=Lotharella oceanica T... [more]
C1FF14_MICCC6.200e-2137.09Uncharacterized protein n=1 Tax=Micromonas commoda... [more]
C1MGG1_MICPC8.150e-2135.22Predicted protein n=2 Tax=Micromonas pusilla TaxID... [more]
A0A7S0NI69_MICPS4.570e-2036.18Hypothetical protein (Fragment) n=1 Tax=Micromonas... [more]
R1D3K6_EMIHU7.690e-1935.11Uncharacterized protein n=1 Tax=Emiliania huxleyi ... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig109contigE-siliculosus-1a_F_contig109:52385..56083 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size555
Model size2126
Exons5
Ec32 orthologEc-17_001500.1
Ec32 ortholog descriptionconserved unknown protein
Hectar predicted targeting categoryother localisation
Best eggNOG OGNA|NA|NA
Best tax levelEukaryota
EggNOG OGs2DZV4@1,2S7BP@2759
Seed eggNOG ortholog2880.D7FKV4
Seed ortholog evalue3.1e-101
Seed ortholog score374.4
Taxonomic scopeEukaryota
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927590.8602455-UTR-E-siliculosus-1a_F_contig109:52384..526541622927590.8602455-UTR-E-siliculosus-1a_F_contig109:52384..52654Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig109 52385..52654 +
1696318601.009917-UTR-E-siliculosus-1a_F_contig109:52384..526541696318601.009917-UTR-E-siliculosus-1a_F_contig109:52384..52654Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig109 52385..52654 +
1622927590.8752842-UTR-E-siliculosus-1a_F_contig109:53695..537451622927590.8752842-UTR-E-siliculosus-1a_F_contig109:53695..53745Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig109 53696..53745 +
1696318601.0239375-UTR-E-siliculosus-1a_F_contig109:53695..537451696318601.0239375-UTR-E-siliculosus-1a_F_contig109:53695..53745Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig109 53696..53745 +
1622927590.948523-UTR-E-siliculosus-1a_F_contig109:54832..560831622927590.948523-UTR-E-siliculosus-1a_F_contig109:54832..56083Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig109 54833..56083 +
1696318601.0821407-UTR-E-siliculosus-1a_F_contig109:54832..560831696318601.0821407-UTR-E-siliculosus-1a_F_contig109:54832..56083Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig109 54833..56083 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927590.8897197-CDS-E-siliculosus-1a_F_contig109:53745..538521622927590.8897197-CDS-E-siliculosus-1a_F_contig109:53745..53852Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig109 53746..53852 +
1696318601.031742-CDS-E-siliculosus-1a_F_contig109:53745..538521696318601.031742-CDS-E-siliculosus-1a_F_contig109:53745..53852Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig109 53746..53852 +
1622927590.901669-CDS-E-siliculosus-1a_F_contig109:54049..542041622927590.901669-CDS-E-siliculosus-1a_F_contig109:54049..54204Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig109 54050..54204 +
1696318601.0392175-CDS-E-siliculosus-1a_F_contig109:54049..542041696318601.0392175-CDS-E-siliculosus-1a_F_contig109:54049..54204Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig109 54050..54204 +
1622927590.9168494-CDS-E-siliculosus-1a_F_contig109:54319..544731622927590.9168494-CDS-E-siliculosus-1a_F_contig109:54319..54473Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig109 54320..54473 +
1696318601.052908-CDS-E-siliculosus-1a_F_contig109:54319..544731696318601.052908-CDS-E-siliculosus-1a_F_contig109:54319..54473Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig109 54320..54473 +
1622927590.9286196-CDS-E-siliculosus-1a_F_contig109:54693..548321622927590.9286196-CDS-E-siliculosus-1a_F_contig109:54693..54832Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig109 54694..54832 +
1696318601.0681636-CDS-E-siliculosus-1a_F_contig109:54693..548321696318601.0681636-CDS-E-siliculosus-1a_F_contig109:54693..54832Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig109 54694..54832 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig109.619.1prot_E-siliculosus-1a_F_contig109.619.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig109 53746..54832 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig109.619.1

>prot_E-siliculosus-1a_F_contig109.619.1 ID=prot_E-siliculosus-1a_F_contig109.619.1|Name=mRNA_E-siliculosus-1a_F_contig109.619.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=185bp
MSSSPFSLAPSRWLVMMDIGREKGTWMPQSWGRSGRRVEVDLLVQFLPGG
DMKADVDSPFVDMTVTPGKWSVGAAQGKPRRRPTNSLGSLTSDTCRFWVE
TDGFGRGDVTIPAGRIYFAVPAWGGKLSRKGLVTVRQRRWLVREESRILG
VFGTELLVPDAEGRVPPRAPRPRTPPFPDGFRDG*
back to top

mRNA from alignment at E-siliculosus-1a_F_contig109:52385..56083+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig109.619.1 ID=mRNA_E-siliculosus-1a_F_contig109.619.1|Name=mRNA_E-siliculosus-1a_F_contig109.619.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=3699bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig109:52385..56083+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
GCGGTAGCGAGCACGCTCTCCTCTCTCCTCTCGCCGCGTGAACTGAAGAC
CATGCGCACTACCTTTTGCGCGTTACTACTGTTCGCTGTTTTTGTTTCCG
AGGTGCTGGGTTTCGTGACGTACAGCAGCAGCAGTAGTATTGCAGCAGTG
CCCGTAGACCCGCGATATGCAGCAGGAGGTTGAGCAACGATGAGAGCGGC
GAGGCTTTAGAGCAGGCAGCGGCAAAGCTCAGGAAGGAGGTCGCTGATCT
TGAAAAGGAGCTGGCGAAAGGTCAGAACGCAGTTGGTGTGGCGTGGGATC
GAGAAATTCAAGAAAAATGTACATGTACCTTTGGGTGTGGCGTGTACACG
GCACGGTACAACTTCAAACTGCCGTGTAGGTTCATGATCGGTAAGCAGCA
GCTTGATATACGGCGGTTGTGGTGGTGAATATAACCGCCTAATATCGGGC
AGCCGCCATATTCGTGAATAAGGCGGAACAGGGCTTGAGATCGCCTTATT
ACGGAGGTGACCGCGCGCAGCGTATGTAGTGGTTATCACCTCACGGCGCG
TCTTCGAGTGGAAGAGGGTGCCCACGCACCGTGCACTGCCGTGTTCTCAC
TTGTATATCGACCCTGGTCACTTCTTCAATCGTTTGAACCGAATATTGTC
AGCAGCGTTACGTACATCCGATGCCAGCAATACAAGAATATACATGCTCT
TGTGTGCCGATGCGAGAAACAACGATTCTGTCACCTTCGTGAAAATTACA
ACTACATAATAGTAGCCAACAGGACCACCACGCAATTTGAAAATAAAAAG
TGGTAACCCAAGAACATAATATTCTGCGTGAATGACGCTTGGCCCCTGGG
TACAGGTCAAGCACTACTTTGTGCTTCCCCGGCCCTTGTATCTCTGAAAA
TACATCCGCCTTCAAGAATCCTCCCATGCCCCACTGAAGCACGGGTTTGA
TGCGCCACGTGATACTTGTTGTTTCAGTTCAAGCCGGGCGGTGTATCGTT
CACCCGCTCAGTTGCCATGCGTCAGAGAGGTACATGCACTTCATAGAGGA
CGTACTGATGCCAAAATGAGCATCGCCTGATATCGGGTTTGGGATCGATC
TTTACGCCTTATACAGGGCCCGACCCGGTATGACCGCCTTATACCGGGTC
TGAGCTGTGGGAGCAAATTTCGGCCGCCTTTTATCGGGTATACCTCCTTA
CATCGCCCCCCTTGCTGCTGCATGTATTTCGTCAACGTCTACCTGTCGGG
CATGCACTGCTCGAAAACCTGATGAACCGTTGCGTGGCTGCTCATCCCTG
GCGTGCTAAAGGCAAAAAACAAGATAAAAACGTACCGCCAGAGACCGCTC
CTGACCTGGAAATGTCGTCTTCCCCGTTCAGCCTGGCACCGAGCCGCTGG
CTGGTGATGATGGATATTGGGCGAGAGAAGGGGACCTGGATGCCCCAAAG
TTGGGGTAGAAGTGGGAGGTATGTCACGGCTCGCGTTCGAAAGGAAACCG
TCTGAAACCTTGCGACCGTGTCTATGTGCCCAACGTACGTTCGGCGTCGG
TACAAAATATGTGCTGCCCGAAGCCAGGCCGGCGGACACGAAATCCTTAC
TCAACCTGACTCACCCTCCCACTGTACCGACCTCACCCACGCTTGGATCG
TATCTTCCGAAAAAGGAGAGTGGAAGTGGATTTGCTCGTGCAATTTTTAC
CAGGAGGAGATATGAAAGCGGACGTCGATAGCCCCTTCGTTGATATGACA
GTGACACCTGGAAAATGGAGCGTGGGCGCAGCACAGGGAAAACCTCGGCG
GCGACCAACAAACTCCTTGGGTGAGAGTTCTGCCGTAGGTTAGGGTGTGA
GCTACGTGCTCACAATCGTGCTTGTGCGAGGGACACTGTTTGGCATTTTG
ACTGCCATGGATCGTCGTATTAAATTCTCTACCAGGAAGCCTGACGTCGG
ACACATGCCGGTTTTGGGTGGAGACCGACGGGTTCGGCAGGGGCGATGTC
ACGATCCCTGCTGGCCGGATCTATTTCGCCGTGCCGGCATGGGGTGGTAA
ACTGTCGCGTAAAGGGCTCGTGACTGTTCGCCAAAGGCGGTGAGATGGGT
TGTGTTTATTCATCTCACTTGCGTGGTGAATTAAAAAGTGCATTACGTTA
CAAATGATACCGGACGCACTGTGTATTTTTAGCGCGCTGAAGTTCGTGAA
CATACGGAGTAACTGTCGCCATTTTTCTCTGTTACCTTCCATGGTGTTCT
CATTCTAACCTCGTTTCTCTTGTTGTGTAAACCTGAATCCTTGCACGCGA
CTGTTCAAGTTGGTTGGTGCGCGAGGAGTCGCGTATTCTGGGAGTTTTCG
GGACGGAGCTGCTTGTTCCTGACGCTGAAGGGCGAGTGCCACCAAGAGCT
CCTCGTCCTCGGACGCCCCCATTTCCAGATGGTTTCAGGGATGGTTGACA
TTTGATGTCGGAAAGGATGGCATCATCAAGCGCACATTGGAGACATACAG
CATTACAATCATTGGTCTGAGTCTATTTTGTGATGGGCGTCCTACAGTGT
CGTGGCACAAGTTATAGACACGTCTAGACAGCAGCTCAAATGCCCTTGAA
CCTATTGGAGGAACCTGCGGTACATTGAAGTGCTGTGTCATGTTATCAAG
AACACCAGGCACAGCAGGGGGCCAAATGAGGTGTTCTGGGGCCATCTGGG
AGGCTGAACCATTTTTCGGCCGACCAAACTCACCACTTCACGCATGCAGT
GGAAACGAAACAACAGGGCATTGCGTGTACTGCTTATTCAATATTTGGAT
CTCCCCTCTGGCCTAGCTTTTCGCGTACAGCTGAAGTCGAGAAAAGCAAA
GGTCAGAGCGGCCGTACGGTGCTTTCCCGGCACCCTCGACGGTGAAACCG
TGAAAACGTGAAAGAAAGATGATTGGTTGTCGTGGTACCAATTAACAATG
TAGTAGGATGAAGAGGAGGCTAGCCGGCAACGAGCGCTCAAACGAAACAA
CAAGCCCGGCAACAGCGCGGACATGGCAACAACCAATGGGGCGGGAGGAG
GGCAGCAGACGGACGAGACGGCGAGGGAAGAAAGCAAACGAGATAAAGAG
GCGGACAGAGTAGCGCGACATGTGCCGTGTTGAACCCCTTGAATAACGAA
TCCCCCCCCGCCATCACTGCACTATTTCACCAACCCACGAGCGATGACGT
GCCTTTGCTGTCTCGGGTGGCTCTTTTTTGTTTTCTTGCGATCTCTTTTG
TTTGTTTGTCGCTACGGTAGTGGTTCTGGCATGTGCCTTTCTGTTTTTCT
TCCTCTGTTTTCTTTTTCTTTGTGTTTCTCTTCCCATTATTTTCCTTTAA
TGATGGCCGTCTCTTTCTCATGTTAAGTACCTACCCTCTGGCCCGTGATG
TTGACTTCCAGTCTATGTTAGTAAATTAGCCTGTGCCCCGGGAATCGACC
GCGTCAAGTGCTAAGACTAGTGCGGACAGATGAAGATACTGGGTAGAGAG
ATCGGAACGGTATTGAATGTGTAGACAACAACAACAACAACAACAACCGG
GGAGGTGTGCAGTGTAAAATAAACTTCTTCAACTCTTCAACAATAACAGG
AAATCTAAACATGTAGGCAGCGACCGTCGCGGCCACGCGATAACTGACTC
ATTGTTTTCTCGATCACCTATCCCAGGGCGATCAACTTAAGGTTGACTA
back to top

Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig109:52385..56083+

>mRNA_E-siliculosus-1a_F_contig109.619.1 ID=mRNA_E-siliculosus-1a_F_contig109.619.1|Name=mRNA_E-siliculosus-1a_F_contig109.619.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1110bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig109:52385..56083+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGTCGTCTTCCCCGTTCAGCCTGGCACCGAGCCGCTGGCTGGTGATGAT
GGATATTGGGCGAGAGAAGGGGACCTGGATGCCCCAAAGTTGGGGTAGAA
GTGGGAGATGTCGTCTTCCCCGTTCAGCCTGGCACCGAGCCGCTGGCTGG
TGATGATGGATATTGGGCGAGAGAAGGGGACCTGGATGCCCCAAAGTTGG
GGTAGAAGTGGGAGGAGAGTGGAAGTGGATTTGCTCGTGCAATTTTTACC
AGGAGGAGATATGAAAGCGGACGTCGATAGCCCCTTCGTTGATATGACAG
TGACACCTGGAAAATGGAGCGTGGGCGCAGCACAGGGAAAACCTCGGCGG
CGACCAACAAACTCCTTGGGAGAGTGGAAGTGGATTTGCTCGTGCAATTT
TTACCAGGAGGAGATATGAAAGCGGACGTCGATAGCCCCTTCGTTGATAT
GACAGTGACACCTGGAAAATGGAGCGTGGGCGCAGCACAGGGAAAACCTC
GGCGGCGACCAACAAACTCCTTGGGAAGCCTGACGTCGGACACATGCCGG
TTTTGGGTGGAGACCGACGGGTTCGGCAGGGGCGATGTCACGATCCCTGC
TGGCCGGATCTATTTCGCCGTGCCGGCATGGGGTGGTAAACTGTCGCGTA
AAGGGCTCGTGACTGTTCGCCAAAGGCGGAAGCCTGACGTCGGACACATG
CCGGTTTTGGGTGGAGACCGACGGGTTCGGCAGGGGCGATGTCACGATCC
CTGCTGGCCGGATCTATTTCGCCGTGCCGGCATGGGGTGGTAAACTGTCG
CGTAAAGGGCTCGTGACTGTTCGCCAAAGGCGTTGGTTGGTGCGCGAGGA
GTCGCGTATTCTGGGAGTTTTCGGGACGGAGCTGCTTGTTCCTGACGCTG
AAGGGCGAGTGCCACCAAGAGCTCCTCGTCCTCGGACGCCCCCATTTCCA
GATGGTTTCAGGGATGGTTGATTGGTTGGTGCGCGAGGAGTCGCGTATTC
TGGGAGTTTTCGGGACGGAGCTGCTTGTTCCTGACGCTGAAGGGCGAGTG
CCACCAAGAGCTCCTCGTCCTCGGACGCCCCCATTTCCAGATGGTTTCAG
GGATGGTTGA
back to top