mRNA_E-siliculosus-1a_F_contig109.613.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig109.613.1
Unique NamemRNA_E-siliculosus-1a_F_contig109.613.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig109.613.1 vs. uniprot
Match: D7FKU7_ECTSI (Casein kinase II subunit beta n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FKU7_ECTSI)

HSP 1 Score: 485 bits (1249), Expect = 1.530e-169
Identity = 236/243 (97.12%), Postives = 237/243 (97.53%), Query Frame = 3
Query:   60 MIVRKASMLLVSLVCAAPSTDCCTIDPKLTSLRGGGGRQAWIQDFCRTPGNEFFAEVPLSFIRESMNSIDIGRGVDIPYRQEALGVILGERRIGVGVHGDNNASTVQSSAALLYGLLHARFLVSPQGLKVVLEKFSKADFGRCPRVYCQGQAVLPVGESDRPKQSSVKVFCPRCGDLYYPSGYVRACDGAFWGTTLPHLLLLGWPELKTTPNTSHYVPRVFGFKVHAEELSASDPDGHQERLS 788
            MIVRKA MLL+SLVCAA  TDCCTIDPKLTSLRGGGGRQAWIQDFCRTPGNEFFAEVPLSFIRESMNSIDIGRGVDIPYRQEALGVILGERRIGVGVHGDNNASTVQSSAALLYGLLHARFLVSPQGLKVVLEKFSKADFGRCPRVYCQGQAVLPVGESDRPKQSSVKVFCPRCGDLYYPSGYVRACDGAFWGTTLPHLLLLGWPELKTTPNTSHYVPRVFGFKVHAEELSA D DG QERLS
Sbjct:    1 MIVRKALMLLLSLVCAA--TDCCTIDPKLTSLRGGGGRQAWIQDFCRTPGNEFFAEVPLSFIRESMNSIDIGRGVDIPYRQEALGVILGERRIGVGVHGDNNASTVQSSAALLYGLLHARFLVSPQGLKVVLEKFSKADFGRCPRVYCQGQAVLPVGESDRPKQSSVKVFCPRCGDLYYPSGYVRACDGAFWGTTLPHLLLLGWPELKTTPNTSHYVPRVFGFKVHAEELSAPDQDGRQERLS 241          
BLAST of mRNA_E-siliculosus-1a_F_contig109.613.1 vs. uniprot
Match: I1I694_BRADI (Casein kinase II subunit beta n=23 Tax=BOP clade TaxID=359160 RepID=I1I694_BRADI)

HSP 1 Score: 189 bits (479), Expect = 4.600e-53
Identity = 93/205 (45.37%), Postives = 127/205 (61.95%), Query Frame = 3
Query:  135 DPKLTSLRGGGGRQ-AWIQDFCRTPGNEFFAEVPLSFIRESMNSIDIGRGVDIPYRQEALGVILGERRIGVGVHGDNNASTVQSSAALLYGLLHARFLVSPQGLKVVLEKFSKADFGRCPRVYCQGQAVLPVGESDRPKQSSVKVFCPRCGDLYYP-SGYVRACDGAFWGTTLPHLLLLGWPELKTTPNTSHYVPRVFGFKVHAE 743
            D + + + G  G   +WI  FC   GNEFF E+   +I++  N   +     +PY   AL +IL        V  +     ++SSA +LYGL+HAR++++ +GL  +LEKF   DFGRCPRVYC GQ  LP G+SD P+ S+VKVFCP+C DL+YP S Y    DGA++GTT PHL L+ +P LK    +  YVPRVFGFK+H +
Sbjct:   69 DSEDSDVSGSEGEDTSWIAWFCSLRGNEFFCEIDDDYIQDDFNLCGLSN--QVPYYDYALDLILDIESSNGDVFTEEQNELIESSAEMLYGLIHARYILTSKGLAAMLEKFKNYDFGRCPRVYCCGQPCLPAGQSDIPRSSTVKVFCPKCEDLHYPRSKYQGNIDGAYFGTTFPHLFLMTYPHLKPQKPSQQYVPRVFGFKLHKQ 271          
BLAST of mRNA_E-siliculosus-1a_F_contig109.613.1 vs. uniprot
Match: A0A2P6TZ54_CHLSO (Casein kinase II subunit beta n=1 Tax=Chlorella sorokiniana TaxID=3076 RepID=A0A2P6TZ54_CHLSO)

HSP 1 Score: 189 bits (479), Expect = 8.190e-53
Identity = 90/188 (47.87%), Postives = 121/188 (64.36%), Query Frame = 3
Query:  177 AWIQDFCRTPGNEFFAEVPLSFIRESMNSIDIGRGVDIPYRQEALGVILGERRIGVGVHGDNNASTVQSSAALLYGLLHARFLVSPQGLKVVLEKFSKADFGRCPRVYCQGQAVLPVGESDRPKQSSVKVFCPRCGDLYYP-SGYVRACDGAFWGTTLPHLLLLGWPELKTTPNTSHYVPRVFGFKVH 737
            +WI  FC   GNEFF EV   +I++  N    G    +PY   AL +IL    +   V  +     V+ +A +LYGL+HAR++++ +GL  + +KF   DFGRCPRVYC GQA LPVG SD P+QS+VK+FCP+C D+YYP S Y    DGA++GTT  HL  L +P+L+    T HYVP+VFGFK+H
Sbjct:   40 SWISWFCSLKGNEFFCEVAEDYIQDDFNLS--GLSSQVPYYDYALDLILDSESLQNEVLTEQAQEMVEEAAEILYGLIHARYILTSRGLSAMCDKFKNCDFGRCPRVYCNGQACLPVGLSDIPRQSTVKLFCPKCEDVYYPRSKYHGNLDGAYFGTTFAHLFQLTYPQLRPAKPTDHYVPKVFGFKIH 225          
BLAST of mRNA_E-siliculosus-1a_F_contig109.613.1 vs. uniprot
Match: A0A453CJQ9_AEGTS (Casein kinase II subunit beta n=1 Tax=Aegilops tauschii subsp. strangulata TaxID=200361 RepID=A0A453CJQ9_AEGTS)

HSP 1 Score: 186 bits (471), Expect = 1.330e-52
Identity = 89/203 (43.84%), Postives = 127/203 (62.56%), Query Frame = 3
Query:  135 DPKLTSLRGGGGRQ-AWIQDFCRTPGNEFFAEVPLSFIRESMNSIDIGRGVDIPYRQEALGVILGERRIGVGVHGDNNASTVQSSAALLYGLLHARFLVSPQGLKVVLEKFSKADFGRCPRVYCQGQAVLPVGESDRPKQSSVKVFCPRCGDLYYP-SGYVRACDGAFWGTTLPHLLLLGWPELKTTPNTSHYVPRVFGFKVH 737
            D + + L G  G   +WI  FC   GNEFF EV   +I++  N    G    +PY + AL +IL        +  +     ++S+A +LYGL+H R++++ +GL  +L+K+   DFGRCPRV+C GQ  LPVG+SD P+ S+VK++CP+C DLYYP S Y    DGA++GTT PHL L+ +P LK    +  YVP+VFGFK+H
Sbjct:   15 DSEESDLSGSDGEDTSWISWFCSLRGNEFFCEVDDDYIQDDFNLC--GLSGQVPYYEYALDLILDVESSHGDMFTEEQNELIESAAEMLYGLIHVRYILTSKGLAAMLDKYKNYDFGRCPRVHCSGQPCLPVGQSDIPRSSNVKIYCPKCEDLYYPRSKYQSNIDGAYFGTTFPHLFLMTYPHLKPQKPSQQYVPKVFGFKLH 215          
BLAST of mRNA_E-siliculosus-1a_F_contig109.613.1 vs. uniprot
Match: A0A6J0JEP3_RAPSA (Casein kinase II subunit beta n=1 Tax=Raphanus sativus TaxID=3726 RepID=A0A6J0JEP3_RAPSA)

HSP 1 Score: 187 bits (476), Expect = 1.390e-52
Identity = 85/204 (41.67%), Postives = 126/204 (61.76%), Query Frame = 3
Query:  135 DPKLTSLRGGGGRQAWIQDFCRTPGNEFFAEVPLSFIRESMNSIDIGRGVDIPYRQEALGVILGERRIGVGVHGDNNASTVQSSAALLYGLLHARFLVSPQGLKVVLEKFSKADFGRCPRVYCQGQAVLPVGESDRPKQSSVKVFCPRCGDLYYPSGYVRACDGAFWGTTLPHLLLLGWPELKTTPNTSHYVPRVFGFKVHAEE 746
            D + + + G  G  +WI  FC   GNEFF EV   ++++  N    G    +PY   AL +IL        +  +     V+S+A +LYGL+H R++++ +GL  +LEK+   DFGRCPRV+C GQ+ LPVG+SD P+ S+VK++CP+C DLYYP    +  DGA++GTT PHL L+    +K    +  YVP++FGFKVH ++
Sbjct:   74 DSEGSDVSGSEGETSWISWFCNLRGNEFFCEVDEDYVQDDFNLC--GLSGQVPYYDYALDLILDVESSNSDMFTEEQNELVESAAEMLYGLIHVRYILTTKGLTAMLEKYKNYDFGRCPRVFCCGQSCLPVGQSDIPRSSTVKIYCPKCEDLYYPRSKYQDIDGAYFGTTFPHLFLMAHGNMKPQKPSQSYVPKIFGFKVHKKQ 275          
BLAST of mRNA_E-siliculosus-1a_F_contig109.613.1 vs. uniprot
Match: A0A2J8A3W0_9CHLO (Casein kinase II subunit beta n=1 Tax=Tetrabaena socialis TaxID=47790 RepID=A0A2J8A3W0_9CHLO)

HSP 1 Score: 187 bits (474), Expect = 2.100e-52
Identity = 89/197 (45.18%), Postives = 124/197 (62.94%), Query Frame = 3
Query:  177 AWIQDFCRTPGNEFFAEVPLSFIRESMNSIDIGRGVDIPYRQEALGVILGERRIGVGVHGDNNASTVQSSAALLYGLLHARFLVSPQGLKVVLEKFSKADFGRCPRVYCQGQAVLPVGESDRPKQSSVKVFCPRCGDLYYP-SGYVRACDGAFWGTTLPHLLLLGWPELKTTPNTSHYVPRVFGFKVHAEELSASDP 764
            +WI  FC   GNEFF EV   +I +  N    G    +PY + AL +IL        +  D     ++S+A +LYGL+HAR++V+ +GL  +LEKF   +FGRCPR YC+GQA LPVG +D P QS+VK+FCP+C D++YP S Y  + DGA++GTT PHLLL+ +P  +   +   YVPR+FGFK+H       +P
Sbjct:   43 SWISWFCSLRGNEFFCEVDEEYIEDDFNLS--GLSTQVPYYEYALDMILDNEPPQDVLLTDQQHELLESAAEMLYGLIHARYIVTARGLACMLEKFKNYEFGRCPRFYCEGQACLPVGTADVPGQSTVKIFCPKCEDIFYPRSEYQCSIDGAYFGTTFPHLLLMTYPMYRPPKSVEQYVPRIFGFKLHPSAYGNREP 237          
BLAST of mRNA_E-siliculosus-1a_F_contig109.613.1 vs. uniprot
Match: UPI00098DFA46 (putative casein kinase II subunit beta-4 isoform X1 n=1 Tax=Asparagus officinalis TaxID=4686 RepID=UPI00098DFA46)

HSP 1 Score: 187 bits (474), Expect = 2.500e-52
Identity = 90/203 (44.33%), Postives = 126/203 (62.07%), Query Frame = 3
Query:  135 DPKLTSLRGGGGRQ-AWIQDFCRTPGNEFFAEVPLSFIRESMNSIDIGRGVDIPYRQEALGVILGERRIGVGVHGDNNASTVQSSAALLYGLLHARFLVSPQGLKVVLEKFSKADFGRCPRVYCQGQAVLPVGESDRPKQSSVKVFCPRCGDLYYP-SGYVRACDGAFWGTTLPHLLLLGWPELKTTPNTSHYVPRVFGFKVH 737
            D + + + G  G   +WI  FC   GNEFF EV   +I++  N    G    +PY   AL +IL        +  +     V+S+A +LYGL+H R++++ +G+  +L+KF   DFGRCPRVYC GQ  LPVG+SD P+ S+VK++CP+C D+YYP S Y    DGA++GTT PHL L+ +P LK    +  YVPRVFGFK+H
Sbjct:   70 DSEESDVSGSDGEDTSWISWFCNLRGNEFFCEVDDDYIQDDFNLC--GLSSQVPYYDYALDLILDVESSHGDMFTEEQNELVESAAEMLYGLIHVRYILTSKGMAAMLDKFKNYDFGRCPRVYCCGQPCLPVGQSDIPRSSTVKIYCPKCEDIYYPRSKYQGNLDGAYFGTTFPHLFLMTYPHLKPQKPSQRYVPRVFGFKIH 270          
BLAST of mRNA_E-siliculosus-1a_F_contig109.613.1 vs. uniprot
Match: UPI001B3BE397 (casein kinase II subunit beta-2 isoform X1 n=2 Tax=Gossypium hirsutum TaxID=3635 RepID=UPI001B3BE397)

HSP 1 Score: 184 bits (468), Expect = 2.790e-52
Identity = 92/203 (45.32%), Postives = 126/203 (62.07%), Query Frame = 3
Query:  135 DPKLTSLRGGGGRQ-AWIQDFCRTPGNEFFAEVPLSFIRESMNSIDIGRGVDIPYRQEALGVILGERRIGVGVHGDNNASTVQSSAALLYGLLHARFLVSPQGLKVVLEKFSKADFGRCPRVYCQGQAVLPVGESDRPKQSSVKVFCPRCGDLYYP-SGYVRACDGAFWGTTLPHLLLLGWPELKTTPNTSHYVPRVFGFKVH 737
            D + + + G  G   +WI  FC   GNEFF EV   +I++  N    G    +PY   AL +IL        +  +     V+S+A +LYGL+HARF+++ +G+  +L+K+   DFGRCPRVYC GQ  LPVG+SD P+ S+VK+FCPRC D+YYP S Y    DGA++GTT PHL L+ +  LK    +  YVPRVFGFK+H
Sbjct:    6 DTEESDVSGSDGDDTSWISWFCNLRGNEFFCEVDDDYIQDDFNLC--GLSSQVPYYDYALDLILDIESSHGDMFTEEQNELVESAAEMLYGLIHARFILTSKGMAAMLDKYKNYDFGRCPRVYCCGQPCLPVGQSDFPRSSTVKIFCPRCEDIYYPRSKYQGNIDGAYFGTTFPHLFLMTYSHLKPLKASQIYVPRVFGFKLH 206          
BLAST of mRNA_E-siliculosus-1a_F_contig109.613.1 vs. uniprot
Match: G7JYM7_MEDTR (Casein kinase II subunit beta n=3 Tax=Trifolieae TaxID=163742 RepID=G7JYM7_MEDTR)

HSP 1 Score: 187 bits (474), Expect = 3.250e-52
Identity = 90/203 (44.33%), Postives = 129/203 (63.55%), Query Frame = 3
Query:  135 DPKLTSLRGGGGRQ-AWIQDFCRTPGNEFFAEVPLSFIRESMNSIDIGRGVDIPYRQEALGVILGERRIGVGVHGDNNASTVQSSAALLYGLLHARFLVSPQGLKVVLEKFSKADFGRCPRVYCQGQAVLPVGESDRPKQSSVKVFCPRCGDLYYP-SGYVRACDGAFWGTTLPHLLLLGWPELKTTPNTSHYVPRVFGFKVH 737
            D + + + G  G   +WI  FC   GNEFF EV   +I++  N    G    +PY   AL +IL        +  +     ++S+A +LYG++HAR++++ +GL  +L+K+   DFGRCPRVYC GQ  LPVG+SD P+ S+VK++CPRC D+YYP S Y    DGA++GTT PHLLL+ + +LK    + +YVPRVFGFK+H
Sbjct:   79 DSEESDVSGSDGDDTSWISWFCNLRGNEFFCEVDDDYIQDDFNLC--GLSSQVPYYDYALDLILDVESSHGDMFTEEQNELIESAAEMLYGMIHARYILTSKGLAAMLDKYKNYDFGRCPRVYCSGQPCLPVGQSDIPRSSTVKIYCPRCEDIYYPRSKYQGNIDGAYFGTTFPHLLLMTYGQLKPQKPSQNYVPRVFGFKLH 279          
BLAST of mRNA_E-siliculosus-1a_F_contig109.613.1 vs. uniprot
Match: A0A0V0I873_SOLCH (Casein kinase II subunit beta n=3 Tax=Solanum TaxID=4107 RepID=A0A0V0I873_SOLCH)

HSP 1 Score: 185 bits (470), Expect = 3.540e-52
Identity = 91/203 (44.83%), Postives = 126/203 (62.07%), Query Frame = 3
Query:  135 DPKLTSLRGGGGRQ-AWIQDFCRTPGNEFFAEVPLSFIRESMNSIDIGRGVDIPYRQEALGVILGERRIGVGVHGDNNASTVQSSAALLYGLLHARFLVSPQGLKVVLEKFSKADFGRCPRVYCQGQAVLPVGESDRPKQSSVKVFCPRCGDLYYP-SGYVRACDGAFWGTTLPHLLLLGWPELKTTPNTSHYVPRVFGFKVH 737
            D + + + G  G   +WI  FC   GNEFF EV   +I++  N    G    +PY   AL +IL        +  +     V+S+A +LYGL+H R++++ +G+  +LEK+   DFGRCPRVYC GQ  LPVG+SD P+ S+VK++CPRC D+YYP S Y    DGA++GTT PHL L+ +  LK    T +YVPRVFGFK+H
Sbjct:   36 DSEESDVSGSDGEDTSWISWFCNLRGNEFFCEVDDEYIQDDFNLC--GLSSQVPYYDYALDLILDVESSHGDMFTEEQNELVESAAEMLYGLIHVRYILTSKGMAAMLEKYKNYDFGRCPRVYCCGQPCLPVGQSDIPRSSTVKIYCPRCEDIYYPRSKYQGNIDGAYFGTTFPHLYLMTYGHLKPQKPTQNYVPRVFGFKLH 236          
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig109.613.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FKU7_ECTSI1.530e-16997.12Casein kinase II subunit beta n=2 Tax=Ectocarpus T... [more]
I1I694_BRADI4.600e-5345.37Casein kinase II subunit beta n=23 Tax=BOP clade T... [more]
A0A2P6TZ54_CHLSO8.190e-5347.87Casein kinase II subunit beta n=1 Tax=Chlorella so... [more]
A0A453CJQ9_AEGTS1.330e-5243.84Casein kinase II subunit beta n=1 Tax=Aegilops tau... [more]
A0A6J0JEP3_RAPSA1.390e-5241.67Casein kinase II subunit beta n=1 Tax=Raphanus sat... [more]
A0A2J8A3W0_9CHLO2.100e-5245.18Casein kinase II subunit beta n=1 Tax=Tetrabaena s... [more]
UPI00098DFA462.500e-5244.33putative casein kinase II subunit beta-4 isoform X... [more]
UPI001B3BE3972.790e-5245.32casein kinase II subunit beta-2 isoform X1 n=2 Tax... [more]
G7JYM7_MEDTR3.250e-5244.33Casein kinase II subunit beta n=3 Tax=Trifolieae T... [more]
A0A0V0I873_SOLCH3.540e-5244.83Casein kinase II subunit beta n=3 Tax=Solanum TaxI... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig109contigE-siliculosus-1a_F_contig109:16748..20359 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size732
Model size1421
Exons6
Ec32 orthologEc-17_001440.1
Ec32 ortholog descriptionCasein kinase II, regulatory subunit
Hectar predicted targeting categorysignal peptide
BRITEko00000,ko00001,ko03009
Best eggNOG OGNA|NA|NA
Best tax levelEukaryota
COG Functional cat.DKT
EggNOG OGsCOG5041@1,KOG3092@2759
EggNOG free text desc.protein kinase regulator activity
KEGG Pathwayko03008,ko04064,ko04137,ko04139,ko04310,ko04520,ko04712,ko05162,ko05168,ko05169,map03008,map04064,map04137,map04139,map04310,map04520,map04712,map05162,map05168,map05169
KEGG koko:K03115
Seed eggNOG ortholog2880.D7FKU7
Seed ortholog evalue2.1e-134
Seed ortholog score485.0
Taxonomic scopeEukaryota
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig109.613.1prot_E-siliculosus-1a_F_contig109.613.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig109 16807..19729 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927589.718463-UTR-E-siliculosus-1a_F_contig109:16747..168061622927589.718463-UTR-E-siliculosus-1a_F_contig109:16747..16806Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig109 16748..16806 +
1696318600.395033-UTR-E-siliculosus-1a_F_contig109:16747..168061696318600.395033-UTR-E-siliculosus-1a_F_contig109:16747..16806Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig109 16748..16806 +
1622927589.8262618-UTR-E-siliculosus-1a_F_contig109:19729..203591622927589.8262618-UTR-E-siliculosus-1a_F_contig109:19729..20359Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig109 19730..20359 +
1696318600.4784698-UTR-E-siliculosus-1a_F_contig109:19729..203591696318600.4784698-UTR-E-siliculosus-1a_F_contig109:19729..20359Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig109 19730..20359 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927589.736847-CDS-E-siliculosus-1a_F_contig109:16806..169741622927589.736847-CDS-E-siliculosus-1a_F_contig109:16806..16974Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig109 16807..16974 +
1696318600.4109726-CDS-E-siliculosus-1a_F_contig109:16806..169741696318600.4109726-CDS-E-siliculosus-1a_F_contig109:16806..16974Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig109 16807..16974 +
1622927589.7493954-CDS-E-siliculosus-1a_F_contig109:17282..173861622927589.7493954-CDS-E-siliculosus-1a_F_contig109:17282..17386Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig109 17283..17386 +
1696318600.422086-CDS-E-siliculosus-1a_F_contig109:17282..173861696318600.422086-CDS-E-siliculosus-1a_F_contig109:17282..17386Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig109 17283..17386 +
1622927589.766671-CDS-E-siliculosus-1a_F_contig109:17822..179091622927589.766671-CDS-E-siliculosus-1a_F_contig109:17822..17909Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig109 17823..17909 +
1696318600.4316294-CDS-E-siliculosus-1a_F_contig109:17822..179091696318600.4316294-CDS-E-siliculosus-1a_F_contig109:17822..17909Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig109 17823..17909 +
1622927589.7796733-CDS-E-siliculosus-1a_F_contig109:18152..182271622927589.7796733-CDS-E-siliculosus-1a_F_contig109:18152..18227Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig109 18153..18227 +
1696318600.442127-CDS-E-siliculosus-1a_F_contig109:18152..182271696318600.442127-CDS-E-siliculosus-1a_F_contig109:18152..18227Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig109 18153..18227 +
1622927589.7930932-CDS-E-siliculosus-1a_F_contig109:18840..189101622927589.7930932-CDS-E-siliculosus-1a_F_contig109:18840..18910Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig109 18841..18910 +
1696318600.4493551-CDS-E-siliculosus-1a_F_contig109:18840..189101696318600.4493551-CDS-E-siliculosus-1a_F_contig109:18840..18910Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig109 18841..18910 +
1622927589.8128574-CDS-E-siliculosus-1a_F_contig109:19501..197291622927589.8128574-CDS-E-siliculosus-1a_F_contig109:19501..19729Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig109 19502..19729 +
1696318600.462148-CDS-E-siliculosus-1a_F_contig109:19501..197291696318600.462148-CDS-E-siliculosus-1a_F_contig109:19501..19729Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig109 19502..19729 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig109.613.1

>prot_E-siliculosus-1a_F_contig109.613.1 ID=prot_E-siliculosus-1a_F_contig109.613.1|Name=mRNA_E-siliculosus-1a_F_contig109.613.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=244bp
MIVRKASMLLVSLVCAAPSTDCCTIDPKLTSLRGGGGRQAWIQDFCRTPG
NEFFAEVPLSFIRESMNSIDIGRGVDIPYRQEALGVILGERRIGVGVHGD
NNASTVQSSAALLYGLLHARFLVSPQGLKVVLEKFSKADFGRCPRVYCQG
QAVLPVGESDRPKQSSVKVFCPRCGDLYYPSGYVRACDGAFWGTTLPHLL
LLGWPELKTTPNTSHYVPRVFGFKVHAEELSASDPDGHQERLS*
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mRNA from alignment at E-siliculosus-1a_F_contig109:16748..20359+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig109.613.1 ID=mRNA_E-siliculosus-1a_F_contig109.613.1|Name=mRNA_E-siliculosus-1a_F_contig109.613.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=3612bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig109:16748..20359+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
CCTTCGTGCATCTGCACCTCCCTTTTGAACGAGGTGCTGCCAAAGCAGAG TCAGTCAATATGATCGTGCGAAAGGCATCGATGCTCTTGGTAAGTCTGGT GTGTGCAGCACCTTCAACGGACTGCTGTACAATCGACCCGAAGCTAACTT CGCTAAGGGGAGGAGGAGGACGCCAGGCTTGGATACAGGACTTTTGTCGC ACCCCAGGCAACGAGTTTTTCGCAGAGGTGGGAACGGTGCCACCTACCTG GTAGCAACAGCAGTGTTTGGTTGGGACAACTCTTGTTGCAGTGTGACATT CCGTGCGTATTCCTGGATGGACTCCATTTATGTGTCTGCTTGTCTACATG TAAATAATACCACAGCGAGGCTGTTGAAGAACGCGAAGTTCAATTTGGGT ACACTGCTGATTCTGTGCCCACGAAAAGGTTCTGGTGTTGGATCTCGGGG AAGTGGAGATCACCCTCTACTAGCTGCATCAGTTACTTTCAAAGCCGCCA CCGGTCTAACCTACATATGACTCGATTTGCCTCAGGTCCCGTTGAGCTTC ATACGCGAGAGCATGAATTCAATCGATATCGGAAGGGGGGTCGATATACC GTACCGACAAGAAGCGCTCGGAGTGATTCTGGGAGAGAGGTGACACTGCT GTCGTGGGCATTCTTTGGGAATAATCGTTGATGAAATGCCTGTTGAACGG CCGCCTGTGTGACCGCTGTCATCCTACCATTTTGTTACACGTAGGAGCTG TTCTGCTGCATGGTCGTCCCGGGAACCCGCTCGCACCTACCGTGGCGCGT ACCGTGCACTTTTTCGGCGACAACAAGGGTTGTGTACTTTAAGGGGCCGC CTCGTGAGTTGTGTCTCTAGAGTTTGAGTACACAAATATCTTCCGATCAC CACATTGGCCGTCTTTGTAACACAGGTGCACTGCAGTTTCGAAACTCGCT GCTGTAACTTTGTCCAAAGAACATCATCAATGCGCTGTCTTACACAGCTG GACGAAATGATGCTTCCCTGTACATGCCATGGAACGCTGACTCTTCCGCG TCTGCGGTCCCGCTTCAATCGGCAGAAGAATAGGCGTGGGTGTGCACGGC GATAACAATGCATCGACGGTGCAGTCATCGGCAGCGCTCTTGTACGGATT GCTTCATGCGAGGTACGAAGCTCGTAGTGTTATGGCAGTCCCACCCAATG TGAAACTTTTGAAGTTGGTGGTTGGGGCGCTTTTTGTGCGTATACGCCTC CTGCGGGAGACTAGGCATTCATGCTGAGACTCAAGCTACACTACGTTCCC ATGACGGTGTCAAGACTTGTTTGAAAGGGACAATTTTCTGATACCTTGCC TACGTTCTGATTATCACCCCTCGCTGTTTCCGTGTGGACCCCGTCCCTCT TGCAGATTTCTAGTGAGCCCACAGGGCTTAAAAGTCGTGCTCGAAAAGTT CTCCAAGGCAGACTTCGGGAGATGCCCCAGGTAAATCGTGCTCTAAAGGA AAAAAAATAAGGGTCTCGGTTTTCGACACAACAAAAGACTGAGAAATACT CCCAGACGGCGCAACACGATGATAAGATGTTTTTGACAACGGCAAGAACA ATATCATACCACGAAACAAGAAAAACCAGGGGAACGCACCGAACACAGAA CGTCGCTAGTCTTGCAAACAGTGTACGGGCAGGGGATCAGATATTGTTGT GCGATAACTCGGCGTCTTTCGTGGCGAGTTGGAAGCGCCAGTTCTTCTCT GCACAATTTGTTGGCGTTGTCGATGGTTTGGAAAGTTTCGTATCCAAACG CACCGAGGAAACGGCTGTTGAGAGCCCAGAGGACGTGCGAAACTCAATTC TGAGTCAACGGTGAGCAGGTGGCGACGCTAACATACCTTCCGGAAAGGGT ACAGTAGTTATGACACTGGCGAGATTCCGTCGTCCCCTGAAATGTTGTCT GGCGTATCTAGGTACGCAGGATTCCGGAGGGGTTCAACACAACGAAAGTT AGATCGTTTTCGTTTGGGACATACACGTTTGTGCGTCATGTTCAGGCATA CGAGCTGATGCACGACTTTCCGACGTTGCCCGCGACCCTACAGAGTTTAT TGCCAAGGCCAGGCCGTGCTTCCAGTTGGAGAATCGGACAGACCAAAGCA GAGTTCTGTGAAGGTGAGCGTTATGCTTTAATGGATATTACGTTGTCCGT GAGTCTATATCTTAGCATTAGCTACGCATTTGGAGTCCGACCCAGAGTTC CGCATCTCCTGCTTGCTTACCTTTTGAGTTTTTTATGTAACATCAAGCGC CGGGTTCAGCCCTCCCTTTCTGTGCCGATCCACGCAGATATCAATCAAGT GTGCGCGCTAAGGTTGTTCGTTGGAAGTAGAAAACCTTGGACACTAAAAT TCAAACGAGTAAGTAACCTGGCCGCCACAGTTTGACTGTTGGGGAGAACG ATCACCGGCACCAATATCACGCTTACCGAGCGTGCACTAGGTGGGCGGAT TTGCCAACACGTGTCTCAAATTCCAACCGGGTTGGAATTTCACTCGCCCT AGTCTTTCTCCGCGCGGCCCCGCGTTGAAATGACACCGATATCTGTCCTG TCATGTCGTACATTGCAGATGCATCGGCCTGGGATAGTTTGTGCAACAGT TTTGAAAACTTGCACATGCACCATAGTGGAGTCTCGCAGGGCAACCAATA GAAACTTCTGCAAAACCCGCGTGGTCAGCTCTTTACCCTTGGCGATGTTG TCAGGTGTTCTGCCCGCGCTGCGGTGACCTTTACTATCCGTCGGGATACG TGCGGGCATGCGACGGAGCATTCTGGGGAACAACCCTGCCCCACCTCCTG TTGCTTGGCTGGCCAGAGCTGAAGACTACGCCAAACACGTCTCACTACGT GCCCAGGGTGTTCGGGTTCAAAGTACACGCGGAGGAGTTGAGTGCTTCAG ATCCAGACGGTCACCAAGAGAGGTTATCGTAGTAGCGAAGCTGCAGGAGC GTAGGCGAAGAGCCTTTTGTACAGGTGAACATCAGTGCTTCGGTATATCG TTGGAATCGAGAGCAGCAGTGACATCCCCCCTGCTGTGGTTGTTGGGGGT GGGTAAACTGGAAGGAGGGGCAAATGATGCAGATTTTTGTGATACGAGGA GATTTTTGGTTAGCTGAATGACGAGGGCATCGAAGGCTGTAAATGCAGGA CACACATCTCCCATATTCGACCGTGCATTTCAGCCCCACGCAAATTTCAA AGCAGAGGAAAATAGCCGGCGCCGTATGTTGTAGATCTCACCGAGAGATT TTGGAGTATTGATCATTCGGTCATGGCACCGTCTCGGCGGTGAGGCCATC GGTCCAAGGGGGTATGATAGAAATAGACAGCAGTCAAACAAGGCATGCAA AATTAGACTTAGACTACAGAACGCGCCACCACTTAAGAACCTCTTATTTT GGCCGAGGCTGCGGTTCTTAGTTCCTAGGGATATGCTTCAATGGCCACTG TATAGGTTTTAGTGTAGGGGTTCTTAACTGGGCTCGAAAATGGTGCTCAA GTTCTTAAATTTTGATTTTTGTGAGGCTCAATTTCTTAACTCCTGGGTTC TTAAGTGGTGGC
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig109:16748..20359+

>mRNA_E-siliculosus-1a_F_contig109.613.1 ID=mRNA_E-siliculosus-1a_F_contig109.613.1|Name=mRNA_E-siliculosus-1a_F_contig109.613.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1464bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig109:16748..20359+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGATCGTGCGAAAGGCATCGATGCTCTTGGTAAGTCTGGTGTGTGCAGC
ACCTTCAACGGACTGCTGTACAATCGACCCGAAGCTAACTTCGCTAAGGG
GAGGAGGAGGACGCCAGGCTTGGATACAGGACTTTTGTCGCACCCCAGGC
AACGAGTTTTTCGCAGAGATGATCGTGCGAAAGGCATCGATGCTCTTGGT
AAGTCTGGTGTGTGCAGCACCTTCAACGGACTGCTGTACAATCGACCCGA
AGCTAACTTCGCTAAGGGGAGGAGGAGGACGCCAGGCTTGGATACAGGAC
TTTTGTCGCACCCCAGGCAACGAGTTTTTCGCAGAGGTCCCGTTGAGCTT
CATACGCGAGAGCATGAATTCAATCGATATCGGAAGGGGGGTCGATATAC
CGTACCGACAAGAAGCGCTCGGAGTGATTCTGGGAGAGAGGTCCCGTTGA
GCTTCATACGCGAGAGCATGAATTCAATCGATATCGGAAGGGGGGTCGAT
ATACCGTACCGACAAGAAGCGCTCGGAGTGATTCTGGGAGAGAGAAGAAT
AGGCGTGGGTGTGCACGGCGATAACAATGCATCGACGGTGCAGTCATCGG
CAGCGCTCTTGTACGGATTGCTTCATGCGAGAAGAATAGGCGTGGGTGTG
CACGGCGATAACAATGCATCGACGGTGCAGTCATCGGCAGCGCTCTTGTA
CGGATTGCTTCATGCGAGATTTCTAGTGAGCCCACAGGGCTTAAAAGTCG
TGCTCGAAAAGTTCTCCAAGGCAGACTTCGGGAGATGCCCCAGATTTCTA
GTGAGCCCACAGGGCTTAAAAGTCGTGCTCGAAAAGTTCTCCAAGGCAGA
CTTCGGGAGATGCCCCAGAGTTTATTGCCAAGGCCAGGCCGTGCTTCCAG
TTGGAGAATCGGACAGACCAAAGCAGAGTTCTGTGAAGAGTTTATTGCCA
AGGCCAGGCCGTGCTTCCAGTTGGAGAATCGGACAGACCAAAGCAGAGTT
CTGTGAAGGTGTTCTGCCCGCGCTGCGGTGACCTTTACTATCCGTCGGGA
TACGTGCGGGCATGCGACGGAGCATTCTGGGGAACAACCCTGCCCCACCT
CCTGTTGCTTGGCTGGCCAGAGCTGAAGACTACGCCAAACACGTCTCACT
ACGTGCCCAGGGTGTTCGGGTTCAAAGTACACGCGGAGGAGTTGAGTGCT
TCAGATCCAGACGGTCACCAAGAGAGGTTATCGTAGGTGTTCTGCCCGCG
CTGCGGTGACCTTTACTATCCGTCGGGATACGTGCGGGCATGCGACGGAG
CATTCTGGGGAACAACCCTGCCCCACCTCCTGTTGCTTGGCTGGCCAGAG
CTGAAGACTACGCCAAACACGTCTCACTACGTGCCCAGGGTGTTCGGGTT
CAAAGTACACGCGGAGGAGTTGAGTGCTTCAGATCCAGACGGTCACCAAG
AGAGGTTATCGTAG
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