mRNA_E-siliculosus-1a_F_contig109.611.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_E-siliculosus-1a_F_contig109.611.1
Unique Name	mRNA_E-siliculosus-1a_F_contig109.611.1
Type	mRNA
Organism	Ectocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)

Homology

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BLAST of mRNA_E-siliculosus-1a_F_contig109.611.1 vs. uniprot
Match: D7FKU5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FKU5_ECTSI)

HSP 1 Score: 464 bits (1193), Expect = 4.870e-160
Identity = 231/247 (93.52%), Postives = 235/247 (95.14%), Query Frame = 1

Query:    1 MDKALLGVEWRFLAHASDDEPGFSTAWLQQKSLKREADCREREYRNGILAGFANEFGMTSIFPSHRLQQGVGEDDAEGDDVEEEHGRVICNKKDPSTSSRTAPSASLPHRDLPILPEDPPTSTVVKTPALPALVAALKKGGVRVDDLQGGESRHAEDTGSWDGVDLASSPCLQQYMVGDNIEDVESAAGNVDAQERVYGRPGTAHVPVRPSTPPTLLVYKPCISIKVADNVPSDLQAMSKLLETKEK 741
            MDKALLGVEWRFLAHASDDEPGFSTAWLQQKSLKREADCREREYRNGILAGFANEFGMTSIFPS RL+QGV EDDAEGDDVEEEH  V+CNKK PSTSSRTAP ASLPHRDLPILPEDPP STVVKTPALPALVAALKKGGVRVDDLQGG+SRHAEDTGSWDGVDLASSPCLQQYMVGDNIEDVESAAGNV  QERVYGRP TA VPVRPSTPPTLLVYKPCISIKVADNVPS+LQAMSKLLE KEK
Sbjct:    1 MDKALLGVEWRFLAHASDDEPGFSTAWLQQKSLKREADCREREYRNGILAGFANEFGMTSIFPSRRLEQGVDEDDAEGDDVEEEHDHVVCNKKGPSTSSRTAPGASLPHRDLPILPEDPPISTVVKTPALPALVAALKKGGVRVDDLQGGDSRHAEDTGSWDGVDLASSPCLQQYMVGDNIEDVESAAGNVGVQERVYGRPSTAQVPVRPSTPPTLLVYKPCISIKVADNVPSELQAMSKLLEMKEK 247

The following BLAST results are available for this feature:

BLAST of mRNA_E-siliculosus-1a_F_contig109.611.1 vs. uniprot

BLAST of mRNA_E-siliculosus-1a_F_contig109.611.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 1


Match Name	E-value	Identity	Description
D7FKU5_ECTSI	4.870e-160	93.52	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
E-siliculosus-1a_F_contig109	contig	E-siliculosus-1a_F_contig109:5193..9533 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90	2022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female	2021-02-24

Properties


Property Name	Value
Start	1
Stop	1
Cds size	1551
Model size	1551
Exons	10
Ec32 ortholog	Ec-17_001420.1
Ec32 ortholog description	expressed unknown protein
Hectar predicted targeting category	other localisation

Relationships

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_E-siliculosus-1a_F_contig109.611.1	prot_E-siliculosus-1a_F_contig109.611.1	Ectocarpus siliculosus Ec863f_EcPH12_90f female	polypeptide	E-siliculosus-1a_F_contig109 5193..9533 +

The following CDS feature(s) are a part of this mRNA:

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at E-siliculosus-1a_F_contig109:5193..9533+
coding sequence from alignment at E-siliculosus-1a_F_contig109:5193..9533+

protein sequence of mRNA_E-siliculosus-1a_F_contig109.611.1

>prot_E-siliculosus-1a_F_contig109.611.1 ID=prot_E-siliculosus-1a_F_contig109.611.1|Name=mRNA_E-siliculosus-1a_F_contig109.611.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=517bp
MDKALLGVEWRFLAHASDDEPGFSTAWLQQKSLKREADCREREYRNGILA
GFANEFGMTSIFPSHRLQQGVGEDDAEGDDVEEEHGRVICNKKDPSTSSR
TAPSASLPHRDLPILPEDPPTSTVVKTPALPALVAALKKGGVRVDDLQGG
ESRHAEDTGSWDGVDLASSPCLQQYMVGDNIEDVESAAGNVDAQERVYGR
PGTAHVPVRPSTPPTLLVYKPCISIKVADNVPSDLQAMSKLLETKEKLIE
GPSSSETTAPRPSSEVEGAFERSAMTRLKIGMPMKQLSPTRPKGSRSSRS
GGRAMRKKGPETSMEAPSPPTSLQNTPREPASHRTPYGKAWYINPELWGL
GSSPQVESEVLDQESDNADGAKQPLAHTKSMKERIPGLFSAIRFTKYIRQ
QGVRMPAHLESTDNAIRAEEARVRQRRQARTARQDQDGAEEDKSAEDQEN
APAPTPTASRSKAWRARVDAAMVFKKERKRDPDEKTRERIDPSGTAPTDR
GRQEVGIRAACSTADA*

mRNA from alignment at E-siliculosus-1a_F_contig109:5193..9533+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_E-siliculosus-1a_F_contig109.611.1 ID=mRNA_E-siliculosus-1a_F_contig109.611.1|Name=mRNA_E-siliculosus-1a_F_contig109.611.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=4341bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig109:5193..9533+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGGACAAGGCTTTGCTTGGGGTAAGAAGAGAGACATCAGCAAAGCCAAA
ACTCCGGTAAATATCTCAATATTGCATCACACTCGGCTAATTCTAACTTG
ATGCCTAGACTAGATGAGTATAGTCCTTGTCCAAATCAGCTCTCGCGAAT
ATGCCCATACCGCGATGGAACCACCTCCTCCATCGACTTGCCTCTATGAC
CTTTGCTTCCCTCCTGAAACACACAAGGTGGAATGGCGCTTCCTTGCACA
CGCCTCGGACGACGAACCTGGCTTCTCCACTGCATGGTTGCAACAAAAAT
CTTTGAAGAGGGAGGCCGACTGCAGGGAACGGGAGTACCGAAATGGTATC
TTGGCTGGGTTTGCGAATGAGTTCGGCATGACCAGCATTTTCCCGTCCCA
CCGTCTCCAACAAGGCGTCGGCGAAGATGATGCAGAAGGCGACGACGTGG
AGGAAGAACATGGCCGTGTTATTTGCAATAAAAAAGATCCTTCTACTTCT
TCGCGGACGGCGCCGAGTGCATCATTGCCCCATCGCGATCTTCCGATATT
GCCCGAGGTGCGACTGCGGGGGCCGACTGTTCTAGTCTATTAGTCGAACA
CACCCCGAAGCCACCAACCACAGTACGCTGGCTGTCAAAACGCACAAACA
CAGCAGAGCAGACGTCTTGGCGAGGCACTGTGGGTTTTCGACCGCAGATC
GTACTTGCTGTCTCTCGCTCGCGTATAACCTGACTCACCTGCACTACACT
GTCAAAAAGCTAAAGGCAACCTGTATGTCGGCCTGACTCTTTCGTGTGCT
TGAATACGTTGCTGTCGGACAGGTAATCGTAGTCTCTGCAAGATGCCATA
TCGTCAAGTTGGTATTCCTACCATATAAGCTATCCCAGGTGCAAGGTATC
GTGAGTAGCACCGCATTTCAAAATTCAATCGCGTTCGCCGTACCCCCGGC
GTATTTATTCACCTGCGAATCACCTGAAGGATCCGCCAACATCCACCGTG
GTCAAGACACCCGCTCTGCCAGCTCTTGTTGCTGCTCTCAAGAAAGGGGG
AGTTCGTGTGGATGACCTACAGGTACACCAGTGTGTTAAAGTGTGATGAT
TTTGTTGCTTGAAGCTCCTCGGAACATCACAAGAGGCCAAACATGGTAAC
CTTGGGTCGCGGCGTACTTTTTCCATGCCCTGTGTGCGGCCGAGTAGGGT
GGAGAATCAAGGCATGCGGAAGACACAGGATCATGGGATGGCGTAGACTT
GGCGTCTTCTCCCTGCTTACAACAATACATGGTGGGAGACAACATCGAAG
ATGTCGAAAGCGCTGCGGGCAACGTGGATGCGCAAGAACGGGTGTACGGC
CGACCAGGCACGGCGCATGTCCCGGTCAGACCGAGCACGCCCCCGACACT
TTTGGTTTACAAACCTTGCATTAGGTGGGTAGAAGCGCACCGAGCAAGAA
CTATGTTGTACTCTCGACGGGCCCGCCCCGTTCGATCTCCGAAACCGCTA
ACTCTTCTCATTCTGTTGCCGAACACTCCGCAGCATCAAGGTTGCCGACA
ACGTGCCGAGCGACCTCCAGGCCATGTCGAAACTGCTGGAAACGAAGGAA
AAACTGTAAGTGGTTTTTGTGGATTGGGCGCAAGCAAGCGGTACCGATTA
CAGGTTTCTGTACGCTGTGTATTGGGGATAATTCCAACGTCTCTGAAGTC
TTGACTGTTATTCGTTCGTCCGTCGGACTATGCGTTTCAAGGTAGATTAT
TGCTCGTACGATTTAACCATTGTGCAAGCATCGGCTTTGTCGGTGCGAGG
TCCCTCGCAGCTGGAAACAAACTGGGAAAAAAGATCTTCTGTTGGAGCAC
GGGACAATTCAAGCCGTTCACCAGGTTCGACTCGCCAACCGTGCCACGAA
CTCTAGCTGACACTCGCCAGCCCTGACTGTTTGCACCTACAGGATAGAGG
GGCCATCGTCATCAGAAACAACTGCCCCTCGGCCTTCCAGTGAGGTAGAA
GGAGCGTTTGAAAGAAGCGCTATGACGAGACTGAAAATTGGAATGCCAAT
GAAGCAATTGTCGCCGACACGCCCGAAAGGCTCTCGCAGCAGGTATCAAC
GGTTTCTGTTGTGTTCTGTTGACCGCATGACAGCATATAAGAACGCCAAG
CACAACGTGACGAGATGTGGTGGTAGCCCACAGTGCAGCAGCCGTGAGTA
AGACTCACCATACCACTCCACTCGAGGTTCCTTCATAACTTTTTGGGTTA
AGAGAGGCGTTGGGGGGTTTGACGGAAGTGTCACTCGGCCAGCCGATGTT
CTTGGTCGAATATGATGTGTTCCATATCTCTCTATACTTTCTACGAAACT
TCTACGGTGCGCGAATTGATTGTTTCGTTGTAGCGCTGAGAGAATGTCCA
TCAACAGGGGGCACCATGCTGATGGCTATCGATTATTGAAACAATCAGCA
GGTCAGGAGGCAGAGCCATGAGAAAGAAAGGACCGGAAACATCAATGGAA
GCTCCCAGCCCACCAACATCTCTCCAAAACACTCCACGCGAACCGGTGGG
CTCGTTTTCGCTGTCTTGCTATCCCCGCATTCCTACTTGGTTCATATGAG
CAACGTCCTAGCATACCCAGCGCGCGTTTCGCACACGCGAAGAATATGTC
AGTCATTCAGGGTGATCACCACAAATACCCCGTTGGCATGATGCCCAAAG
ATCCGGACATCGTTGTTGTACCGTGTCTGCCTTATCGTTCTCAACTTCTG
AGCTTAGCACACCACCTACACCTCATCTATTTAGCCAACAACTGCGTTAA
ACGCTTTGACGTATGTATGTCATTTCTCTACCTGGTTGGGGTACCGCAGG
CGAGTCATCGTACACCATACGGCAAGGCCTGGTACATTAATCCAGAACTT
TGGGGCTTGGGATCCTCGCCACAAGTAGAGAGCGAGGTTCTTGACCAAGA
AAGCGACAATGCGGACGGTGGGTTTTTAGACCATGTACACAAGCAACACT
AGTCGCTGATTCAAAGTTAACGTGGGCACAACGATGTTCCTTGCCACAAA
TGTTAATCTTTTACACATGCGTTCAGGCCTACAGATCTGGGACCAAGCTC
TCCATGGATAATCGATTGAAGGTCGATGTGAAAATGGGTCGTTGCTGAGA
AATGACCCTCGTTTTCATGAACCCCTCTACTAATAGGTGGCGCGCACCTT
CATCTCTGGTGCTACGTTTTGTCCGTCTTGACCTCTGCCAAGTACACTGT
GGCATTGATTTCTACGCCGCGGCCGGATTGTTTGTTGTGCAAAACAATCG
TGTGTGGCGTCCATTACTTTCACGCGGCTTGAACCCACCATACCTCAGGG
GCGAAACAACCTCTGGCTCACACAAAATCGATGAAGGAAAGGATTCCGGG
CCTGTTCTCCGCCATTCGATTCACCAAATACATCCGCCAGCAGGTATGAA
ACTCGCTCAGGGGAGGATACCCGTGGGAGAACTGAAACAATATTTATTTT
CATTTCCGCTCATCTCAACAGTTTTGTACGCAGTCCAGTCTCTCCTGCAG
CCACCGTGGAAAAGCTTCGGCCACACATCCATAGAAATCTTAACTCTCCG
TTAAACTCCCCTGCTTTCTTTTGAGGTGCAAGTATTCCGCTTTGGTCGCC
ATGGGGGCTCGGCAATCCTCTCGCCCGCGTTGCTACTTGTAGCTTGATAG
TCTAACGCGTTGATGCGTGGCGCCGAGATTTGAAGCCATGAACTCTGACG
ACCCGAGGGTTCGAAGGGTGCATTCAGACAACGGGGGCGACCCGCTGAGC
ATTTGTGTAGTCTGCTGTCGCGGGTTGATGGATATTTGGAAAACAAGTCA
GGTTCGTGCCTTCCCAGCCATGGAGACCTAGCTCAGGTTGAATCTGCTCC
ATACGAATAAACCTACCAGAGCCACTTTTTTTACACGAACCGCGTTTCTT
TTATCCCGCCTTGGGGCAACTCAACTTTCACTGCCCGGTGAAGGGCGTTC
GTATGCCGGCACACCTCGAGAGCACCGACAACGCAATAAGAGCAGAGGAG
GCAAGAGTGAGGCAACGCCGGCAAGCTCGAACGGCTCGTCAAGACCAAGA
TGGAGCCGAAGAGGATAAGTCAGCAGAAGATCAGGAGAACGCCCCTGCGC
CCACGCCGACCGCAAGCCGTAGCAAAGCATGGCGCGCCCGAGTGGACGCA
GCCATGGTCTTTAAGAAGGAACGGAAACGGGACCCTGACGAGAAGACCCG
GGAACGAATTGACCCAAGCGGCACAGCACCAACAGATCGGGGGCGACAGG
AAGTGGGGATACGTGCGGCGTGCAGTACAGCTGATGCGTAG

Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig109:5193..9533+

>mRNA_E-siliculosus-1a_F_contig109.611.1 ID=mRNA_E-siliculosus-1a_F_contig109.611.1|Name=mRNA_E-siliculosus-1a_F_contig109.611.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=3102bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig109:5193..9533+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGGACAAGGCTTTGCTTGGGATGGACAAGGCTTTGCTTGGGGTGGAATG
GCGCTTCCTTGCACACGCCTCGGACGACGAACCTGGCTTCTCCACTGCAT
GGTTGCAACAAAAATCTTTGAAGAGGGAGGCCGACTGCAGGGAACGGGAG
TACCGAAATGGTATCTTGGCTGGGTTTGCGAATGAGTTCGGCATGACCAG
CATTTTCCCGTCCCACCGTCTCCAACAAGGCGTCGGCGAAGATGATGCAG
AAGGCGACGACGTGGAGGAAGAACATGGCCGTGTTATTTGCAATAAAAAA
GATCCTTCTACTTCTTCGCGGACGGCGCCGAGTGCATCATTGCCCCATCG
CGATCTTCCGATATTGCCCGAGGTGGAATGGCGCTTCCTTGCACACGCCT
CGGACGACGAACCTGGCTTCTCCACTGCATGGTTGCAACAAAAATCTTTG
AAGAGGGAGGCCGACTGCAGGGAACGGGAGTACCGAAATGGTATCTTGGC
TGGGTTTGCGAATGAGTTCGGCATGACCAGCATTTTCCCGTCCCACCGTC
TCCAACAAGGCGTCGGCGAAGATGATGCAGAAGGCGACGACGTGGAGGAA
GAACATGGCCGTGTTATTTGCAATAAAAAAGATCCTTCTACTTCTTCGCG
GACGGCGCCGAGTGCATCATTGCCCCATCGCGATCTTCCGATATTGCCCG
AGGATCCGCCAACATCCACCGTGGTCAAGACACCCGCTCTGCCAGCTCTT
GTTGCTGCTCTCAAGAAAGGGGGAGTTCGTGTGGATGACCTACAGGATCC
GCCAACATCCACCGTGGTCAAGACACCCGCTCTGCCAGCTCTTGTTGCTG
CTCTCAAGAAAGGGGGAGTTCGTGTGGATGACCTACAGGGTGGAGAATCA
AGGCATGCGGAAGACACAGGATCATGGGATGGCGTAGACTTGGCGTCTTC
TCCCTGCTTACAACAATACATGGTGGGAGACAACATCGAAGATGTCGAAA
GCGCTGCGGGCAACGTGGATGCGCAAGAACGGGTGTACGGCCGACCAGGC
ACGGCGCATGTCCCGGTCAGACCGAGCACGCCCCCGACACTTTTGGTTTA
CAAACCTTGCATTAGGGTGGAGAATCAAGGCATGCGGAAGACACAGGATC
ATGGGATGGCGTAGACTTGGCGTCTTCTCCCTGCTTACAACAATACATGG
TGGGAGACAACATCGAAGATGTCGAAAGCGCTGCGGGCAACGTGGATGCG
CAAGAACGGGTGTACGGCCGACCAGGCACGGCGCATGTCCCGGTCAGACC
GAGCACGCCCCCGACACTTTTGGTTTACAAACCTTGCATTAGCATCAAGG
TTGCCGACAACGTGCCGAGCGACCTCCAGGCCATGTCGAAACTGCTGGAA
ACGAAGGAAAAACTCATCAAGGTTGCCGACAACGTGCCGAGCGACCTCCA
GGCCATGTCGAAACTGCTGGAAACGAAGGAAAAACTGATAGAGGGGCCAT
CGTCATCAGAAACAACTGCCCCTCGGCCTTCCAGTGAGGTAGAAGGAGCG
TTTGAAAGAAGCGCTATGACGAGACTGAAAATTGGAATGCCAATGAAGCA
ATTGTCGCCGACACGCCCGAAAGGCTCTCGCAGCAGGATAGAGGGGCCAT
CGTCATCAGAAACAACTGCCCCTCGGCCTTCCAGTGAGGTAGAAGGAGCG
TTTGAAAGAAGCGCTATGACGAGACTGAAAATTGGAATGCCAATGAAGCA
ATTGTCGCCGACACGCCCGAAAGGCTCTCGCAGCAGCAGGTCAGGAGGCA
GAGCCATGAGAAAGAAAGGACCGGAAACATCAATGGAAGCTCCCAGCCCA
CCAACATCTCTCCAAAACACTCCACGCGAACCGCAGGTCAGGAGGCAGAG
CCATGAGAAAGAAAGGACCGGAAACATCAATGGAAGCTCCCAGCCCACCA
ACATCTCTCCAAAACACTCCACGCGAACCGGCGAGTCATCGTACACCATA
CGGCAAGGCCTGGTACATTAATCCAGAACTTTGGGGCTTGGGATCCTCGC
CACAAGTAGAGAGCGAGGTTCTTGACCAAGAAAGCGACAATGCGGACGGC
GAGTCATCGTACACCATACGGCAAGGCCTGGTACATTAATCCAGAACTTT
GGGGCTTGGGATCCTCGCCACAAGTAGAGAGCGAGGTTCTTGACCAAGAA
AGCGACAATGCGGACGGGGCGAAACAACCTCTGGCTCACACAAAATCGAT
GAAGGAAAGGATTCCGGGCCTGTTCTCCGCCATTCGATTCACCAAATACA
TCCGCCAGCAGGGGCGAAACAACCTCTGGCTCACACAAAATCGATGAAGG
AAAGGATTCCGGGCCTGTTCTCCGCCATTCGATTCACCAAATACATCCGC
CAGCAGGGCGTTCGTATGCCGGCACACCTCGAGAGCACCGACAACGCAAT
AAGAGCAGAGGAGGCAAGAGTGAGGCAACGCCGGCAAGCTCGAACGGCTC
GTCAAGACCAAGATGGAGCCGAAGAGGATAAGTCAGCAGAAGATCAGGAG
AACGCCCCTGCGCCCACGCCGACCGCAAGCCGTAGCAAAGCATGGCGCGC
CCGAGTGGACGCAGCCATGGTCTTTAAGAAGGAACGGAAACGGGACCCTG
ACGAGAAGACCCGGGAACGAATTGACCCAAGCGGCACAGCACCAACAGAT
CGGGGGCGACAGGAAGTGGGGATACGTGCGGCGTGCAGTACAGCTGATGC
GTAGGGCGTTCGTATGCCGGCACACCTCGAGAGCACCGACAACGCAATAA
GAGCAGAGGAGGCAAGAGTGAGGCAACGCCGGCAAGCTCGAACGGCTCGT
CAAGACCAAGATGGAGCCGAAGAGGATAAGTCAGCAGAAGATCAGGAGAA
CGCCCCTGCGCCCACGCCGACCGCAAGCCGTAGCAAAGCATGGCGCGCCC
GAGTGGACGCAGCCATGGTCTTTAAGAAGGAACGGAAACGGGACCCTGAC
GAGAAGACCCGGGAACGAATTGACCCAAGCGGCACAGCACCAACAGATCG
GGGGCGACAGGAAGTGGGGATACGTGCGGCGTGCAGTACAGCTGATGCGT
AG