prot_E-siliculosus-1a_F_contig109.610.1 (polypeptide) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_E-siliculosus-1a_F_contig109.610.1
Unique Name	prot_E-siliculosus-1a_F_contig109.610.1
Type	polypeptide
Organism	Ectocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Sequence length	220

Homology

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BLAST of mRNA_E-siliculosus-1a_F_contig109.610.1 vs. uniprot
Match: D7FKU4_ECTSI (Chlorophyll binding protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FKU4_ECTSI)

HSP 1 Score: 434 bits (1117), Expect = 5.130e-154
Identity = 218/219 (99.54%), Postives = 219/219 (100.00%), Query Frame = 0

Query:    1 MKCTIAMLAACAAGANAFVAPSAFNGAAVATRAQSSSAMKMSFENELGAQPPLGFWDPLYWLEDADQERFDRLRYVEIKHGRICMLAILGHITQENVRLPGNLNFETPFADMPNGLTAISKMGPFGVAQIVAFIGFLELFVMKQKEGSFPGDMSRINPFEKQWESFDEETKLRKRAIELNNGRAAQMGIFALVIHEILDGEPYIINKILGDTIGNVFTF 219
            MKCTIAMLAACAAGANAFVAPSAFNGAAVATRAQSSSAMKMSFENELGAQPPLGFWDPLYWLEDADQERFDRLRYVEIKHGRICMLAILGHITQENVRLPGNLNFETPFADMPNGLTAISKMGPFGVAQIVAFIGFLELFVMKQKEGSFPGDMSRINPFEKQWESFDEETKLRKRAIELNNGRAAQMGIFALVIHEILDGEPYIINKI+GDTIGNVFTF
Sbjct:    1 MKCTIAMLAACAAGANAFVAPSAFNGAAVATRAQSSSAMKMSFENELGAQPPLGFWDPLYWLEDADQERFDRLRYVEIKHGRICMLAILGHITQENVRLPGNLNFETPFADMPNGLTAISKMGPFGVAQIVAFIGFLELFVMKQKEGSFPGDMSRINPFEKQWESFDEETKLRKRAIELNNGRAAQMGIFALVIHEILDGEPYIINKIVGDTIGNVFTF 219

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BLAST of mRNA_E-siliculosus-1a_F_contig109.610.1 vs. uniprot
Match: Q9FEP5_SACLA (Light harvesting protein lhcf3 (Fragment) n=1 Tax=Saccharina latissima TaxID=309358 RepID=Q9FEP5_SACLA)

HSP 1 Score: 327 bits (838), Expect = 7.790e-112
Identity = 156/191 (81.68%), Postives = 177/191 (92.67%), Query Frame = 0

Query:   23 AFNGAAVATRAQSSSAMKMSFENELGAQPPLGFWDPLYWLEDADQERFDRLRYVEIKHGRICMLAILGHITQENVRLPGNLNF--ETPFADMPNGLTAISKMGPFGVAQIVAFIGFLELFVMKQKEGSFPGDMSRINPFEKQWESFDEETKLRKRAIELNNGRAAQMGIFALVIHEILDGEPYIINKILGD 211
            AFNGA++ATRA++SSAMKMSFENELG Q PLG+WDPLYWLE+ADQERFDRLRYVEIKHGRICMLAILGHI QENVRLPG L+F  +  FADMPNGL A+SKMGP GVAQIV FIGFLE+FVMKQKEGSFPGDMSR+NPFEKQW+SFDEETKLRKRAIELNNGRAAQMGIF L++HE+++ +PY+IN +LG+
Sbjct:    1 AFNGASMATRAKTSSAMKMSFENELGVQAPLGYWDPLYWLENADQERFDRLRYVEIKHGRICMLAILGHIVQENVRLPGMLSFSNDQSFADMPNGLGALSKMGPIGVAQIVIFIGFLEVFVMKQKEGSFPGDMSRVNPFEKQWDSFDEETKLRKRAIELNNGRAAQMGIFGLIVHEVINNQPYVINNLLGE 191

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BLAST of mRNA_E-siliculosus-1a_F_contig109.610.1 vs. uniprot
Match: A0A6H5KCX6_9PHAE (LHCP protein n=20 Tax=Phaeophyceae TaxID=2870 RepID=A0A6H5KCX6_9PHAE)

HSP 1 Score: 281 bits (718), Expect = 2.960e-93
Identity = 147/207 (71.01%), Postives = 169/207 (81.64%), Query Frame = 0

Query:    7 MLAACAAGANAFVAPSAFNGAAVATRAQSSSAMKMSFENELGAQPPLGFWDPLYWLEDADQERFDRLRYVEIKHGRICMLAILGHITQENVRLPGNLNFET--PFADMPNGLTAISKMGPFGVAQIVAFIGFLELFVMKQKEGSFPGDMSRI-NPFEKQWESFDEETKLRKRAIELNNGRAAQMGIFALVIHEILDGEPYIINKILG 210
            M  ACAA ANAFVAPSAFNGAAVAT A+SSSAMKMSFE+E+GAQPPLGFWDPL  L DADQERF+RLRYVE+KHGRI MLAI GH+TQ+NVRLPG L+      FADMPNG+ A+SK+ P G+AQI AF+GFLEL VMK  EGSFPGD +   NPF   W++  EET+  KRAIELNNGRAAQMGI AL++HE L+ +PYIIN +LG
Sbjct:    6 MALACAASANAFVAPSAFNGAAVATPAKSSSAMKMSFESEIGAQPPLGFWDPLGLLADADQERFERLRYVEVKHGRIAMLAIAGHLTQQNVRLPGMLSNSANLSFADMPNGVAALSKIPPAGLAQIFAFVGFLELAVMKNVEGSFPGDFTNGGNPFASSWDAMSEETQESKRAIELNNGRAAQMGILALMVHEELNNKPYIINDLLG 212

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BLAST of mRNA_E-siliculosus-1a_F_contig109.610.1 vs. uniprot
Match: A0A6H5JHT6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHT6_9PHAE)

HSP 1 Score: 264 bits (675), Expect = 1.130e-86
Identity = 134/192 (69.79%), Postives = 158/192 (82.29%), Query Frame = 0

Query:   22 SAFNGAAVATRAQSSSAMKMSFENELGAQPPLGFWDPLYWLEDADQERFDRLRYVEIKHGRICMLAILGHITQENVRLPGNLN--FETPFADMPNGLTAISKMGPFGVAQIVAFIGFLELFVMKQKEGSFPGDMSRI-NPFEKQWESFDEETKLRKRAIELNNGRAAQMGIFALVIHEILDGEPYIINKILG 210
            SAFNGAAVAT A+SSSAMKMSFE+E+GAQPPLGFWDPL  L DADQERF+RLRYVE+KHGRI MLAI GH+TQ+NVRLPG L+   +  FADMPNG+ A+SK+ P G+AQI AF+GFLEL VMK  EGSFPGD +   NPF   W++  EET+  KRAIELNNGRAAQMGI AL++HE L+ +PY+IN +LG
Sbjct:   24 SAFNGAAVATSAKSSSAMKMSFESEIGAQPPLGFWDPLGLLADADQERFERLRYVEVKHGRIAMLAIAGHLTQQNVRLPGMLSNSADLSFADMPNGVAALSKIPPAGLAQIFAFVGFLELAVMKNVEGSFPGDFTNGGNPFASSWDAMSEETQASKRAIELNNGRAAQMGILALMVHEELNNKPYVINDLLG 215

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BLAST of mRNA_E-siliculosus-1a_F_contig109.610.1 vs. uniprot
Match: D7FIR0_ECTSI (Light harvesting complex protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FIR0_ECTSI)

HSP 1 Score: 261 bits (667), Expect = 1.920e-85
Identity = 141/219 (64.38%), Postives = 167/219 (76.26%), Query Frame = 0

Query:    1 MKCTIAM---LAACAAGANAFVAPSAFNGAAVATRAQSSSAMKMSFENELGAQPPLGFWDPLYWL-EDADQERFDRLRYVEIKHGRICMLAILGHITQENVRLPGNL--NFETPFADMPNGLTAISKMGPFGVAQIVAFIGFLELFVMKQKEGSFPGDMSRINPFEKQWESFDEETKLRKRAIELNNGRAAQMGIFALVIHEILDGEPYIINKILGDTI 213
            MK   AM   +AACAA A+AFVAPSAF GA++     +SS+MKMSFE E+GAQ P+G+WDPL  L +D  QERFDRLRYVEIKHGRI MLAILGHIT +N R PG L  + +  FAD PNGL AISK+  +G+ QI  FIGFLE  VM QKEGSFPGDMS INPFEK+WES+ EE +  KRAIELNNGRAAQMGI  L++HE ++  PY+IN+ILG  +
Sbjct:    1 MKTACAMAAGVAACAATASAFVAPSAFKGASLTAAKPASSSMKMSFETEIGAQAPIGYWDPLGLLTKDPSQERFDRLRYVEIKHGRIAMLAILGHITAQNFRFPGMLAPSADLSFADCPNGLAAISKIPLYGLIQIFLFIGFLETKVMLQKEGSFPGDMSLINPFEKEWESWTEEEQATKRAIELNNGRAAQMGILGLMVHEQINNTPYVINEILGSHV 219

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BLAST of mRNA_E-siliculosus-1a_F_contig109.610.1 vs. uniprot
Match: D8LNK6_ECTSI (Light harvesting complex protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNK6_ECTSI)

HSP 1 Score: 262 bits (669), Expect = 1.330e-83
Identity = 134/191 (70.16%), Postives = 156/191 (81.68%), Query Frame = 0

Query:   23 AFNGAAVATRAQSSSAMKMSFENELGAQPPLGFWDPLYWLEDADQERFDRLRYVEIKHGRICMLAILGHITQENVRLPGNLNFET--PFADMPNGLTAISKMGPFGVAQIVAFIGFLELFVMKQKEGSFPGDMSRI-NPFEKQWESFDEETKLRKRAIELNNGRAAQMGIFALVIHEILDGEPYIINKILG 210
            AFNGAAVAT A+SSSAMKMSFE+E+GAQPPLGFWDPL  LEDADQERF+RLRYVE+KHGRI MLAI GH+TQ+N RLPG L+      FADMPNG+ A+SK+ P G+AQI AFIGFLEL VMK  EGSFPGD +   NPF   W++  EET+  KRAIELNNGRAAQMGI AL++HE L+ +PY+IN +LG
Sbjct:  181 AFNGAAVATPAKSSSAMKMSFESEIGAQPPLGFWDPLGLLEDADQERFERLRYVEVKHGRIAMLAIAGHLTQQNTRLPGMLSNSANLSFADMPNGVAALSKIPPAGLAQIFAFIGFLELAVMKNVEGSFPGDFTLGGNPFGSSWDAMSEETQASKRAIELNNGRAAQMGILALMVHEELNNKPYVINDLLG 371

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BLAST of mRNA_E-siliculosus-1a_F_contig109.610.1 vs. uniprot
Match: FCPB_MACPY (Fucoxanthin-chlorophyll a-c binding protein B, chloroplastic n=6 Tax=Phaeophyceae TaxID=2870 RepID=FCPB_MACPY)

HSP 1 Score: 256 bits (654), Expect = 1.530e-83
Identity = 134/208 (64.42%), Postives = 161/208 (77.40%), Query Frame = 0

Query:    6 AMLAACAAGANAFVAPSAFNGAAVATRAQSSSAMKMSFENELGAQPPLGFWDPLYWLEDADQERFDRLRYVEIKHGRICMLAILGHITQENVRLPGNLNFET--PFADMPNGLTAISKMGPFGVAQIVAFIGFLELFVMKQKEGSFPGDMSRI-NPFEKQWESFDEETKLRKRAIELNNGRAAQMGIFALVIHEILDGEPYIINKILG 210
            A++A   A A  F  PSAFNGAA+ T A++ SAMKMSFE+E+GAQ PLGFWDPL  L DADQERF+RLRYVE+KHGRI MLAI GH+TQ+N RLPG L+      FADMPNG+ A+SK+ P G+AQI AFIGFLEL VMK  EGSFPGD +   NPF   W++  EET+  KRAIELNNGRAAQMGI AL++HE L+ +PY+IN ++G
Sbjct:    4 AVMAVACAAAPGFRGPSAFNGAALTTSAKACSAMKMSFESEIGAQAPLGFWDPLGLLADADQERFERLRYVEVKHGRIAMLAIAGHLTQQNTRLPGMLSNSANLSFADMPNGVAALSKIPPAGLAQIFAFIGFLELAVMKNVEGSFPGDFTLGGNPFGASWDAMSEETQASKRAIELNNGRAAQMGILALMVHEELNNKPYVINDLVG 211

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BLAST of mRNA_E-siliculosus-1a_F_contig109.610.1 vs. uniprot
Match: FCPF_MACPY (Fucoxanthin-chlorophyll a-c binding protein F, chloroplastic (Fragment) n=1 Tax=Macrocystis pyrifera TaxID=35122 RepID=FCPF_MACPY)

HSP 1 Score: 251 bits (641), Expect = 1.190e-81
Identity = 129/193 (66.84%), Postives = 151/193 (78.24%), Query Frame = 0

Query:   21 PSAFNGAAVATRAQSSSAMKMSFENELGAQPPLGFWDPLYWLEDADQERFDRLRYVEIKHGRICMLAILGHITQENVRLPGNLNFET--PFADMPNGLTAISKMGPFGVAQIVAFIGFLELFVMKQKEGSFPGD-MSRINPFEKQWESFDEETKLRKRAIELNNGRAAQMGIFALVIHEILDGEPYIINKILG 210
            PSAFNGAA++T A+SSSAMKMSFE+E+GAQ PLGFWDPL  L DADQERF+RLRYVE+KHGRI MLAI GH+TQ+N RLPG L+      FADMPNG+ A+SK+ P G+AQI  FIGFLEL VMK  EGSFPGD +   NPF   W+S   ET+  KRAIELNNGRAAQMGI  +++HE L  +PYI N +LG
Sbjct:   13 PSAFNGAALSTPAKSSSAMKMSFESEIGAQAPLGFWDPLGLLADADQERFERLRYVEVKHGRIAMLAIAGHLTQQNTRLPGMLSNSANLSFADMPNGVAALSKIPPGGLAQIFGFIGFLELAVMKNVEGSFPGDFIIGGNPFASSWDSMSSETQASKRAIELNNGRAAQMGILGMMVHEELSNQPYITNDLLG 205

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BLAST of mRNA_E-siliculosus-1a_F_contig109.610.1 vs. uniprot
Match: FCPC_MACPY (Fucoxanthin-chlorophyll a-c binding protein C, chloroplastic n=6 Tax=Phaeophyceae TaxID=2870 RepID=FCPC_MACPY)

HSP 1 Score: 249 bits (635), Expect = 1.140e-80
Identity = 128/193 (66.32%), Postives = 152/193 (78.76%), Query Frame = 0

Query:   21 PSAFNGAAVATRAQSSSAMKMSFENELGAQPPLGFWDPLYWLEDADQERFDRLRYVEIKHGRICMLAILGHITQENVRLPGNLNFET--PFADMPNGLTAISKMGPFGVAQIVAFIGFLELFVMKQKEGSFPGDMSRI-NPFEKQWESFDEETKLRKRAIELNNGRAAQMGIFALVIHEILDGEPYIINKILG 210
            PSAFNGAA+ T A+SSSAMKMSFE+E+GAQ PLGFWDPL  LEDADQ+ F+RLRYVE+K GRI MLAI GH+TQ+N RLPG L+      FADMPNG+ A+SK+ P G+AQI  FIGFLEL VMK  EGSFPGD +   NPF   W++   ET+  KRAIELNNGRAAQMGI AL++HE L+ +PY+IN +LG
Sbjct:   18 PSAFNGAALTTSAKSSSAMKMSFESEIGAQAPLGFWDPLGLLEDADQDAFERLRYVEVKLGRIAMLAIAGHLTQQNARLPGMLSNSANLSFADMPNGVAALSKIPPGGLAQIFGFIGFLELAVMKNVEGSFPGDFTLGGNPFASSWDAMSAETQASKRAIELNNGRAAQMGILALMVHEELNNKPYVINDLLG 210

[Close]

BLAST of mRNA_E-siliculosus-1a_F_contig109.610.1 vs. uniprot
Match: FCPE_MACPY (Fucoxanthin-chlorophyll a-c binding protein E, chloroplastic n=3 Tax=Phaeophyceae TaxID=2870 RepID=FCPE_MACPY)

HSP 1 Score: 247 bits (630), Expect = 5.750e-80
Identity = 125/190 (65.79%), Postives = 150/190 (78.95%), Query Frame = 0

Query:   24 FNGAAVATRAQSSSAMKMSFENELGAQPPLGFWDPLYWLEDADQERFDRLRYVEIKHGRICMLAILGHITQENVRLPGNLNFET--PFADMPNGLTAISKMGPFGVAQIVAFIGFLELFVMKQKEGSFPGDMSRI-NPFEKQWESFDEETKLRKRAIELNNGRAAQMGIFALVIHEILDGEPYIINKILG 210
            FNGAA+AT A+SSSAMKMSFE+E+GAQPP+GFWDPL  + DADQERFDRLRYVEIKHGRI MLA++GHITQ+N RLPG L+F+    FAD PNG+ A SK+ P G  QI+  IG  ELFV+KQ EGSFPGD +   N F+  W++  EET+  KRAIELNNGRAAQMGI A+++HE L  +PYIIN + G
Sbjct:   17 FNGAALATSAKSSSAMKMSFESEIGAQPPIGFWDPLGLVADADQERFDRLRYVEIKHGRIAMLAVVGHITQQNTRLPGMLSFKENLAFADSPNGVAAFSKIPPLGTLQIILAIGCHELFVVKQVEGSFPGDCTTGGNIFQSAWDNMSEETQASKRAIELNNGRAAQMGILAMMVHEQLSNQPYIINDLAG 206

The following BLAST results are available for this feature:

BLAST of mRNA_E-siliculosus-1a_F_contig109.610.1 vs. uniprot

BLAST of mRNA_E-siliculosus-1a_F_contig109.610.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
D7FKU4_ECTSI	5.130e-154	99.54	Chlorophyll binding protein n=2 Tax=Ectocarpus Tax...	[more]
Q9FEP5_SACLA	7.790e-112	81.68	Light harvesting protein lhcf3 (Fragment) n=1 Tax=...	[more]
A0A6H5KCX6_9PHAE	2.960e-93	71.01	LHCP protein n=20 Tax=Phaeophyceae TaxID=2870 RepI...	[more]
A0A6H5JHT6_9PHAE	1.130e-86	69.79	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
D7FIR0_ECTSI	1.920e-85	64.38	Light harvesting complex protein n=2 Tax=Ectocarpu...	[more]
D8LNK6_ECTSI	1.330e-83	70.16	Light harvesting complex protein n=1 Tax=Ectocarpu...	[more]
FCPB_MACPY	1.530e-83	64.42	Fucoxanthin-chlorophyll a-c binding protein B, chl...	[more]
FCPF_MACPY	1.190e-81	66.84	Fucoxanthin-chlorophyll a-c binding protein F, chl...	[more]
FCPC_MACPY	1.140e-80	66.32	Fucoxanthin-chlorophyll a-c binding protein C, chl...	[more]
FCPE_MACPY	5.750e-80	65.79	Fucoxanthin-chlorophyll a-c binding protein E, chl...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0 of Ectocarpus siliculosus 1a female
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR023329	Chlorophyll a/b binding domain superfamily	GENE3D	1.10.3460.10		coord: 44..215 e-value: 8.0E-22 score: 79.9
IPR022796	Chlorophyll A-B binding protein	PFAM	PF00504	Chloroa_b-bind	coord: 44..196 e-value: 9.7E-32 score: 110.7
None	No IPR available	PANTHER	PTHR21649:SF63		coord: 17..201
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE	Signal Peptide	coord: 1..33
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 122..141
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 34..121
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_C_REGION	Signal peptide C-region	coord: 16..33
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_N_REGION	Signal peptide N-region	coord: 1..2
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_H_REGION	Signal peptide H-region	coord: 3..15
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 142..219
None	No IPR available	SIGNALP_EUK	SignalP-noTM	SignalP-noTM	coord: 1..17 score: 0.627
None	No IPR available	SUPERFAMILY	103511	Chlorophyll a-b binding protein	coord: 35..207
IPR001344	Chlorophyll A-B binding protein, plant	PANTHER	PTHR21649	CHLOROPHYLL A/B BINDING PROTEIN	coord: 17..201

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
E-siliculosus-1a_F_contig109	contig	E-siliculosus-1a_F_contig109:1485..4145 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0 of Ectocarpus siliculosus 1a female	2022-09-29
Diamond blastp: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90	2022-09-16
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_E-siliculosus-1a_F_contig109.610.1	mRNA_E-siliculosus-1a_F_contig109.610.1	Ectocarpus siliculosus Ec863f_EcPH12_90f female	mRNA	E-siliculosus-1a_F_contig109 261..4229 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_E-siliculosus-1a_F_contig109.610.1 ID=prot_E-siliculosus-1a_F_contig109.610.1|Name=mRNA_E-siliculosus-1a_F_contig109.610.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=220bp
MKCTIAMLAACAAGANAFVAPSAFNGAAVATRAQSSSAMKMSFENELGAQ
PPLGFWDPLYWLEDADQERFDRLRYVEIKHGRICMLAILGHITQENVRLP
GNLNFETPFADMPNGLTAISKMGPFGVAQIVAFIGFLELFVMKQKEGSFP
GDMSRINPFEKQWESFDEETKLRKRAIELNNGRAAQMGIFALVIHEILDG
EPYIINKILGDTIGNVFTF*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR001344	Chloro_AB-bd_pln
IPR022796	Chloroa_b-bind
IPR023329	Chlorophyll_a/b-bd_dom_sf