mRNA_E-siliculosus-1a_F_contig109.610.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
You are viewing an mRNA, more information available on the corresponding polypeptide page
|
Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig109.610.1 vs. uniprot
Match: D7FKU4_ECTSI (Chlorophyll binding protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FKU4_ECTSI) HSP 1 Score: 436 bits (1121), Expect = 1.130e-149 Identity = 218/219 (99.54%), Postives = 219/219 (100.00%), Query Frame = 1 Query: 85 MKCTIAMLAACAAGANAFVAPSAFNGAAVATRAQSSSAMKMSFENELGAQPPLGFWDPLYWLEDADQERFDRLRYVEIKHGRICMLAILGHITQENVRLPGNLNFETPFADMPNGLTAISKMGPFGVAQIVAFIGFLELFVMKQKEGSFPGDMSRINPFEKQWESFDEETKLRKRAIELNNGRAAQMGIFALVIHEILDGEPYIINKILGDTIGNVFTF 741
MKCTIAMLAACAAGANAFVAPSAFNGAAVATRAQSSSAMKMSFENELGAQPPLGFWDPLYWLEDADQERFDRLRYVEIKHGRICMLAILGHITQENVRLPGNLNFETPFADMPNGLTAISKMGPFGVAQIVAFIGFLELFVMKQKEGSFPGDMSRINPFEKQWESFDEETKLRKRAIELNNGRAAQMGIFALVIHEILDGEPYIINKI+GDTIGNVFTF
Sbjct: 1 MKCTIAMLAACAAGANAFVAPSAFNGAAVATRAQSSSAMKMSFENELGAQPPLGFWDPLYWLEDADQERFDRLRYVEIKHGRICMLAILGHITQENVRLPGNLNFETPFADMPNGLTAISKMGPFGVAQIVAFIGFLELFVMKQKEGSFPGDMSRINPFEKQWESFDEETKLRKRAIELNNGRAAQMGIFALVIHEILDGEPYIINKIVGDTIGNVFTF 219
BLAST of mRNA_E-siliculosus-1a_F_contig109.610.1 vs. uniprot
Match: Q9FEP5_SACLA (Light harvesting protein lhcf3 (Fragment) n=1 Tax=Saccharina latissima TaxID=309358 RepID=Q9FEP5_SACLA) HSP 1 Score: 327 bits (838), Expect = 3.380e-107 Identity = 156/191 (81.68%), Postives = 177/191 (92.67%), Query Frame = 1 Query: 151 AFNGAAVATRAQSSSAMKMSFENELGAQPPLGFWDPLYWLEDADQERFDRLRYVEIKHGRICMLAILGHITQENVRLPGNLNF--ETPFADMPNGLTAISKMGPFGVAQIVAFIGFLELFVMKQKEGSFPGDMSRINPFEKQWESFDEETKLRKRAIELNNGRAAQMGIFALVIHEILDGEPYIINKILGD 717
AFNGA++ATRA++SSAMKMSFENELG Q PLG+WDPLYWLE+ADQERFDRLRYVEIKHGRICMLAILGHI QENVRLPG L+F + FADMPNGL A+SKMGP GVAQIV FIGFLE+FVMKQKEGSFPGDMSR+NPFEKQW+SFDEETKLRKRAIELNNGRAAQMGIF L++HE+++ +PY+IN +LG+
Sbjct: 1 AFNGASMATRAKTSSAMKMSFENELGVQAPLGYWDPLYWLENADQERFDRLRYVEIKHGRICMLAILGHIVQENVRLPGMLSFSNDQSFADMPNGLGALSKMGPIGVAQIVIFIGFLEVFVMKQKEGSFPGDMSRVNPFEKQWDSFDEETKLRKRAIELNNGRAAQMGIFGLIVHEVINNQPYVINNLLGE 191
BLAST of mRNA_E-siliculosus-1a_F_contig109.610.1 vs. uniprot
Match: A0A6H5KCX6_9PHAE (LHCP protein n=20 Tax=Phaeophyceae TaxID=2870 RepID=A0A6H5KCX6_9PHAE) HSP 1 Score: 282 bits (722), Expect = 1.990e-89 Identity = 147/207 (71.01%), Postives = 169/207 (81.64%), Query Frame = 1 Query: 103 MLAACAAGANAFVAPSAFNGAAVATRAQSSSAMKMSFENELGAQPPLGFWDPLYWLEDADQERFDRLRYVEIKHGRICMLAILGHITQENVRLPGNLNFET--PFADMPNGLTAISKMGPFGVAQIVAFIGFLELFVMKQKEGSFPGDMSRI-NPFEKQWESFDEETKLRKRAIELNNGRAAQMGIFALVIHEILDGEPYIINKILG 714
M ACAA ANAFVAPSAFNGAAVAT A+SSSAMKMSFE+E+GAQPPLGFWDPL L DADQERF+RLRYVE+KHGRI MLAI GH+TQ+NVRLPG L+ FADMPNG+ A+SK+ P G+AQI AF+GFLEL VMK EGSFPGD + NPF W++ EET+ KRAIELNNGRAAQMGI AL++HE L+ +PYIIN +LG
Sbjct: 6 MALACAASANAFVAPSAFNGAAVATPAKSSSAMKMSFESEIGAQPPLGFWDPLGLLADADQERFERLRYVEVKHGRIAMLAIAGHLTQQNVRLPGMLSNSANLSFADMPNGVAALSKIPPAGLAQIFAFVGFLELAVMKNVEGSFPGDFTNGGNPFASSWDAMSEETQESKRAIELNNGRAAQMGILALMVHEELNNKPYIINDLLG 212
BLAST of mRNA_E-siliculosus-1a_F_contig109.610.1 vs. uniprot
Match: A0A6H5JHT6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHT6_9PHAE) HSP 1 Score: 264 bits (675), Expect = 2.440e-82 Identity = 134/192 (69.79%), Postives = 158/192 (82.29%), Query Frame = 1 Query: 148 SAFNGAAVATRAQSSSAMKMSFENELGAQPPLGFWDPLYWLEDADQERFDRLRYVEIKHGRICMLAILGHITQENVRLPGNLN--FETPFADMPNGLTAISKMGPFGVAQIVAFIGFLELFVMKQKEGSFPGDMSRI-NPFEKQWESFDEETKLRKRAIELNNGRAAQMGIFALVIHEILDGEPYIINKILG 714
SAFNGAAVAT A+SSSAMKMSFE+E+GAQPPLGFWDPL L DADQERF+RLRYVE+KHGRI MLAI GH+TQ+NVRLPG L+ + FADMPNG+ A+SK+ P G+AQI AF+GFLEL VMK EGSFPGD + NPF W++ EET+ KRAIELNNGRAAQMGI AL++HE L+ +PY+IN +LG
Sbjct: 24 SAFNGAAVATSAKSSSAMKMSFESEIGAQPPLGFWDPLGLLADADQERFERLRYVEVKHGRIAMLAIAGHLTQQNVRLPGMLSNSADLSFADMPNGVAALSKIPPAGLAQIFAFVGFLELAVMKNVEGSFPGDFTNGGNPFASSWDAMSEETQASKRAIELNNGRAAQMGILALMVHEELNNKPYVINDLLG 215
BLAST of mRNA_E-siliculosus-1a_F_contig109.610.1 vs. uniprot
Match: D7FIR0_ECTSI (Light harvesting complex protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FIR0_ECTSI) HSP 1 Score: 263 bits (671), Expect = 1.000e-81 Identity = 141/219 (64.38%), Postives = 167/219 (76.26%), Query Frame = 1 Query: 85 MKCTIAM---LAACAAGANAFVAPSAFNGAAVATRAQSSSAMKMSFENELGAQPPLGFWDPLYWL-EDADQERFDRLRYVEIKHGRICMLAILGHITQENVRLPGNL--NFETPFADMPNGLTAISKMGPFGVAQIVAFIGFLELFVMKQKEGSFPGDMSRINPFEKQWESFDEETKLRKRAIELNNGRAAQMGIFALVIHEILDGEPYIINKILGDTI 723
MK AM +AACAA A+AFVAPSAF GA++ +SS+MKMSFE E+GAQ P+G+WDPL L +D QERFDRLRYVEIKHGRI MLAILGHIT +N R PG L + + FAD PNGL AISK+ +G+ QI FIGFLE VM QKEGSFPGDMS INPFEK+WES+ EE + KRAIELNNGRAAQMGI L++HE ++ PY+IN+ILG +
Sbjct: 1 MKTACAMAAGVAACAATASAFVAPSAFKGASLTAAKPASSSMKMSFETEIGAQAPIGYWDPLGLLTKDPSQERFDRLRYVEIKHGRIAMLAILGHITAQNFRFPGMLAPSADLSFADCPNGLAAISKIPLYGLIQIFLFIGFLETKVMLQKEGSFPGDMSLINPFEKEWESWTEEEQATKRAIELNNGRAAQMGILGLMVHEQINNTPYVINEILGSHV 219
BLAST of mRNA_E-siliculosus-1a_F_contig109.610.1 vs. uniprot
Match: FCPB_MACPY (Fucoxanthin-chlorophyll a-c binding protein B, chloroplastic n=6 Tax=Phaeophyceae TaxID=2870 RepID=FCPB_MACPY) HSP 1 Score: 258 bits (658), Expect = 7.450e-80 Identity = 134/208 (64.42%), Postives = 161/208 (77.40%), Query Frame = 1 Query: 100 AMLAACAAGANAFVAPSAFNGAAVATRAQSSSAMKMSFENELGAQPPLGFWDPLYWLEDADQERFDRLRYVEIKHGRICMLAILGHITQENVRLPGNLNFET--PFADMPNGLTAISKMGPFGVAQIVAFIGFLELFVMKQKEGSFPGDMSRI-NPFEKQWESFDEETKLRKRAIELNNGRAAQMGIFALVIHEILDGEPYIINKILG 714
A++A A A F PSAFNGAA+ T A++ SAMKMSFE+E+GAQ PLGFWDPL L DADQERF+RLRYVE+KHGRI MLAI GH+TQ+N RLPG L+ FADMPNG+ A+SK+ P G+AQI AFIGFLEL VMK EGSFPGD + NPF W++ EET+ KRAIELNNGRAAQMGI AL++HE L+ +PY+IN ++G
Sbjct: 4 AVMAVACAAAPGFRGPSAFNGAALTTSAKACSAMKMSFESEIGAQAPLGFWDPLGLLADADQERFERLRYVEVKHGRIAMLAIAGHLTQQNTRLPGMLSNSANLSFADMPNGVAALSKIPPAGLAQIFAFIGFLELAVMKNVEGSFPGDFTLGGNPFGASWDAMSEETQASKRAIELNNGRAAQMGILALMVHEELNNKPYVINDLVG 211
BLAST of mRNA_E-siliculosus-1a_F_contig109.610.1 vs. uniprot
Match: D8LNK6_ECTSI (Light harvesting complex protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNK6_ECTSI) HSP 1 Score: 262 bits (669), Expect = 2.780e-79 Identity = 134/191 (70.16%), Postives = 156/191 (81.68%), Query Frame = 1 Query: 151 AFNGAAVATRAQSSSAMKMSFENELGAQPPLGFWDPLYWLEDADQERFDRLRYVEIKHGRICMLAILGHITQENVRLPGNLNFET--PFADMPNGLTAISKMGPFGVAQIVAFIGFLELFVMKQKEGSFPGDMSRI-NPFEKQWESFDEETKLRKRAIELNNGRAAQMGIFALVIHEILDGEPYIINKILG 714
AFNGAAVAT A+SSSAMKMSFE+E+GAQPPLGFWDPL LEDADQERF+RLRYVE+KHGRI MLAI GH+TQ+N RLPG L+ FADMPNG+ A+SK+ P G+AQI AFIGFLEL VMK EGSFPGD + NPF W++ EET+ KRAIELNNGRAAQMGI AL++HE L+ +PY+IN +LG
Sbjct: 181 AFNGAAVATPAKSSSAMKMSFESEIGAQPPLGFWDPLGLLEDADQERFERLRYVEVKHGRIAMLAIAGHLTQQNTRLPGMLSNSANLSFADMPNGVAALSKIPPAGLAQIFAFIGFLELAVMKNVEGSFPGDFTLGGNPFGSSWDAMSEETQASKRAIELNNGRAAQMGILALMVHEELNNKPYVINDLLG 371
BLAST of mRNA_E-siliculosus-1a_F_contig109.610.1 vs. uniprot
Match: FCPF_MACPY (Fucoxanthin-chlorophyll a-c binding protein F, chloroplastic (Fragment) n=1 Tax=Macrocystis pyrifera TaxID=35122 RepID=FCPF_MACPY) HSP 1 Score: 251 bits (642), Expect = 1.500e-77 Identity = 134/204 (65.69%), Postives = 156/204 (76.47%), Query Frame = 1 Query: 112 ACAAGANAFVAPSAFNGAAVATRAQSSSAMKMSFENELGAQPPLGFWDPLYWLEDADQERFDRLRYVEIKHGRICMLAILGHITQENVRLPGNLNFET--PFADMPNGLTAISKMGPFGVAQIVAFIGFLELFVMKQKEGSFPGD-MSRINPFEKQWESFDEETKLRKRAIELNNGRAAQMGIFALVIHEILDGEPYIINKILG 714
ACAA A PSAFNGAA++T A+SSSAMKMSFE+E+GAQ PLGFWDPL L DADQERF+RLRYVE+KHGRI MLAI GH+TQ+N RLPG L+ FADMPNG+ A+SK+ P G+AQI FIGFLEL VMK EGSFPGD + NPF W+S ET+ KRAIELNNGRAAQMGI +++HE L +PYI N +LG
Sbjct: 3 ACAA-APGLRGPSAFNGAALSTPAKSSSAMKMSFESEIGAQAPLGFWDPLGLLADADQERFERLRYVEVKHGRIAMLAIAGHLTQQNTRLPGMLSNSANLSFADMPNGVAALSKIPPGGLAQIFGFIGFLELAVMKNVEGSFPGDFIIGGNPFASSWDSMSSETQASKRAIELNNGRAAQMGILGMMVHEELSNQPYITNDLLG 205
BLAST of mRNA_E-siliculosus-1a_F_contig109.610.1 vs. uniprot
Match: FCPC_MACPY (Fucoxanthin-chlorophyll a-c binding protein C, chloroplastic n=6 Tax=Phaeophyceae TaxID=2870 RepID=FCPC_MACPY) HSP 1 Score: 250 bits (638), Expect = 7.030e-77 Identity = 134/213 (62.91%), Postives = 160/213 (75.12%), Query Frame = 1 Query: 85 MKCTIAMLAACAAGANAFVAPSAFNGAAVATRAQSSSAMKMSFENELGAQPPLGFWDPLYWLEDADQERFDRLRYVEIKHGRICMLAILGHITQENVRLPGNLNFET--PFADMPNGLTAISKMGPFGVAQIVAFIGFLELFVMKQKEGSFPGDMSRI-NPFEKQWESFDEETKLRKRAIELNNGRAAQMGIFALVIHEILDGEPYIINKILG 714
MK I +A+ A G PSAFNGAA+ T A+SSSAMKMSFE+E+GAQ PLGFWDPL LEDADQ+ F+RLRYVE+K GRI MLAI GH+TQ+N RLPG L+ FADMPNG+ A+SK+ P G+AQI FIGFLEL VMK EGSFPGD + NPF W++ ET+ KRAIELNNGRAAQMGI AL++HE L+ +PY+IN +LG
Sbjct: 1 MKSAIMAVASAAPGLRG---PSAFNGAALTTSAKSSSAMKMSFESEIGAQAPLGFWDPLGLLEDADQDAFERLRYVEVKLGRIAMLAIAGHLTQQNARLPGMLSNSANLSFADMPNGVAALSKIPPGGLAQIFGFIGFLELAVMKNVEGSFPGDFTLGGNPFASSWDAMSAETQASKRAIELNNGRAAQMGILALMVHEELNNKPYVINDLLG 210
BLAST of mRNA_E-siliculosus-1a_F_contig109.610.1 vs. uniprot
Match: FCPE_MACPY (Fucoxanthin-chlorophyll a-c binding protein E, chloroplastic n=3 Tax=Phaeophyceae TaxID=2870 RepID=FCPE_MACPY) HSP 1 Score: 247 bits (630), Expect = 9.630e-76 Identity = 125/190 (65.79%), Postives = 150/190 (78.95%), Query Frame = 1 Query: 154 FNGAAVATRAQSSSAMKMSFENELGAQPPLGFWDPLYWLEDADQERFDRLRYVEIKHGRICMLAILGHITQENVRLPGNLNFET--PFADMPNGLTAISKMGPFGVAQIVAFIGFLELFVMKQKEGSFPGDMSRI-NPFEKQWESFDEETKLRKRAIELNNGRAAQMGIFALVIHEILDGEPYIINKILG 714
FNGAA+AT A+SSSAMKMSFE+E+GAQPP+GFWDPL + DADQERFDRLRYVEIKHGRI MLA++GHITQ+N RLPG L+F+ FAD PNG+ A SK+ P G QI+ IG ELFV+KQ EGSFPGD + N F+ W++ EET+ KRAIELNNGRAAQMGI A+++HE L +PYIIN + G
Sbjct: 17 FNGAALATSAKSSSAMKMSFESEIGAQPPIGFWDPLGLVADADQERFDRLRYVEIKHGRIAMLAVVGHITQQNTRLPGMLSFKENLAFADSPNGVAAFSKIPPLGTLQIILAIGCHELFVVKQVEGSFPGDCTTGGNIFQSAWDNMSEETQASKRAIELNNGRAAQMGILAMMVHEQLSNQPYIINDLAG 206 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig109.610.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig109.610.1 >prot_E-siliculosus-1a_F_contig109.610.1 ID=prot_E-siliculosus-1a_F_contig109.610.1|Name=mRNA_E-siliculosus-1a_F_contig109.610.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=220bp MKCTIAMLAACAAGANAFVAPSAFNGAAVATRAQSSSAMKMSFENELGAQback to top mRNA from alignment at E-siliculosus-1a_F_contig109:261..4229- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig109.610.1 ID=mRNA_E-siliculosus-1a_F_contig109.610.1|Name=mRNA_E-siliculosus-1a_F_contig109.610.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=3969bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig109:261..4229- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig109:261..4229- >mRNA_E-siliculosus-1a_F_contig109.610.1 ID=mRNA_E-siliculosus-1a_F_contig109.610.1|Name=mRNA_E-siliculosus-1a_F_contig109.610.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1320bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig109:261..4229- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |