mRNA_E-siliculosus-1a_F_contig1089.608.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig1089.608.1
Unique NamemRNA_E-siliculosus-1a_F_contig1089.608.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig1089.608.1 vs. uniprot
Match: A0A6H5JJH2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJH2_9PHAE)

HSP 1 Score: 593 bits (1530), Expect = 3.020e-203
Identity = 315/358 (87.99%), Postives = 327/358 (91.34%), Query Frame = 2 
Query:  317 MPCGDGLDSRTTAVVPESEFHQEDSFDLKCGMTPSSAAVSSDDTERATTAAGRKMEQCAGWIQEVRDSLRGRRLFTLLAVVNLVNYIDRG-VIPGGSEEFNGFIQKTLHTDRPDVFLGVLQSGFILGFSAACFVFTSLARRRSPFSLMAAGLGMWCGAAVFAGVAKPLGSYAVLLMARLLSGVGEASFVTVVPPLITDTAPPGERGLWLALFYTAQPVGAGIGYVYGSALANSCLGWPWAFYFEAFIMAPLAMACSLVPRDRAMAVSNASDYGASPGSATTPATDTTGNRSGSPKDGESSGTAESPKVEQGDGSPARAGSAAAVLSSVATPSPEGNLRRRPDREKKRLLGVRGVAKGG 1387
            M CGDGLDSRTT  VPE+E H+E S D KCGMTPSS AVSS DTERATTA GRK+EQCAGW+QE RD LRGRRLFTLLAVVNLVNY+DRG VIPGGSEEFNGFIQKTLHTDRPDVFLG+LQSG+ILGFSAACFVFTSLARRRSPF+LMAAGLGMWCGAAVFAGVAKPLGSYAVLLMARLLSGVGEASFVTVVPPLITDTAPPGERGLWLALFYTAQPVGAGIGYVYGSALANS LGWPWAFY EAF MAPLAMACSLVPRDRAMAVSNA D+GASPGS  TP TD TGN SGSPKDG+SSG AESP VEQG GSPAR GS++AV SSVA P PEGNLRRRPDREKKRLLGVR  AKGG
Sbjct:    1 MRCGDGLDSRTTPGVPENECHEESS-DFKCGMTPSSTAVSSSDTERATTAVGRKLEQCAGWVQEARDYLRGRRLFTLLAVVNLVNYLDRGKVIPGGSEEFNGFIQKTLHTDRPDVFLGILQSGYILGFSAACFVFTSLARRRSPFNLMAAGLGMWCGAAVFAGVAKPLGSYAVLLMARLLSGVGEASFVTVVPPLITDTAPPGERGLWLALFYTAQPVGAGIGYVYGSALANSGLGWPWAFYLEAFFMAPLAMACSLVPRDRAMAVSNAFDHGASPGSPATPTTDATGNLSGSPKDGDSSGMAESPTVEQGYGSPARVGSSSAVSSSVAMPCPEGNLRRRPDREKKRLLGVRDGAKGG 357
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BLAST of mRNA_E-siliculosus-1a_F_contig1089.608.1 vs. uniprot
Match: D7FMS4_ECTSI (MFS domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMS4_ECTSI)

HSP 1 Score: 535 bits (1379), Expect = 3.420e-181
Identity = 282/304 (92.76%), Postives = 288/304 (94.74%), Query Frame = 2 
Query:  479 MEQCAGWIQEVRDSLRGRRLFTLLAVVNLVNYIDRGVIPGGSEEFNGFIQKTLHTDRPDVFLGVLQSGFILGFSAACFVFTSLARRRSPFSLMAAGLGMWCGAAVFAGVAKPLGSYAVLLMARLLSGVGEASFVTVVPPLITDTAPPGERGLWLALFYTAQPVGAGIGYVYGSALANSCLGWPWAFYFEAFIMAPLAMACSLVPRDRAMAVSNASDYGASPGSATTPATDTTGNRSGSPKDGESSGTAESPKVEQGDGSPARA-GSAAAVLSSVATPSPEGNLRRRPDREKKRLLGVRGVAKGG 1387
            MEQCAGW+QE RDSLRGRRLFTLLAVVNLVNY+DRGVIPGGSEEFNGFIQKTLHTDRPDVFLG+LQSGFILGFSAACFVF SLARRRSPFSLMAAGLGMWCGAAVFAGVAKPLGSYAVLLMARLLSGVGEASFVTVVPPLITDTAPPGERGLWLALFYTAQPVGAGIGYVYGSALANSCLGWPWAFYFEAF MAPLAMACSLVPRDRAMAVSNASDYGA PGS  TP TDTTGN SGSPKDGESSG AESPKVEQG GSPARA GS++AV SSVATPSPEG+LRRRPDREKKRLLGV   A GG
Sbjct:    1 MEQCAGWVQEARDSLRGRRLFTLLAVVNLVNYLDRGVIPGGSEEFNGFIQKTLHTDRPDVFLGILQSGFILGFSAACFVFPSLARRRSPFSLMAAGLGMWCGAAVFAGVAKPLGSYAVLLMARLLSGVGEASFVTVVPPLITDTAPPGERGLWLALFYTAQPVGAGIGYVYGSALANSCLGWPWAFYFEAFFMAPLAMACSLVPRDRAMAVSNASDYGAPPGSTATPTTDTTGNLSGSPKDGESSGMAESPKVEQGYGSPARAEGSSSAVSSSVATPSPEGDLRRRPDREKKRLLGVCDGAGGG 304
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BLAST of mRNA_E-siliculosus-1a_F_contig1089.608.1 vs. uniprot
Match: A0A835YQ86_9STRA (Major facilitator superfamily domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YQ86_9STRA)

HSP 1 Score: 183 bits (464), Expect = 5.720e-48
Identity = 94/188 (50.00%), Postives = 127/188 (67.55%), Query Frame = 2 
Query:  512 RDSLRGRRLFTLLAVVNLVNYIDRGVIPGGSEEFNGFIQKTLHTDRPDVFLGVLQSGFILGFSAACFVFTSLARRRSPFSLMAAGLGMWCGAAVFAGVAKPLGSYAVLLMARLLSGVGEASFVTVVPPLITDTAPPGERGLWLALFYTAQPVGAGIGYVYGSALANSCLGWPWAFYFEAFIMAPLAMA 1075
            R +LRG  +F LL   N++ ++DRG++PG S+E N FI+ +L+T  PDVFLG+LQS FILGF+A+  VF  L    + F L+  GL ++  A +  G A+ +GS+  L  ARLL+GVGEASF  VVPP+I D A P E G WLAL++TA PVG  +GY+YGS LA+S L W  A++ E  +M PL  A
Sbjct:   40 RCALRGSNVFLLLTATNMMIFLDRGILPGCSQEINEFIEDSLNTSTPDVFLGLLQSAFILGFAASTLVFAHLTHYYNAFKLIGVGLIVFAAALLLTGAAEYIGSFWFLFCARLLTGVGEASFTCVVPPIILDNAAPHEGGKWLALYFTAIPVGTALGYIYGSLLAHSRLSWSGAYWLEVPVMLPLIAA 227
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BLAST of mRNA_E-siliculosus-1a_F_contig1089.608.1 vs. uniprot
Match: A0A418AU96_9STRA (MFS domain-containing protein n=2 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A418AU96_9STRA)

HSP 1 Score: 174 bits (441), Expect = 4.050e-44
Identity = 85/184 (46.20%), Postives = 120/184 (65.22%), Query Frame = 2 
Query:  536 LFTLLAVVNLVNYIDRGVIPGGSEEFNGFIQKTLHTDRPDV--FLGVLQSGFILGFSAACFVFTSLARRRSPFSLMAAGLGMWCGAAVFAGVAKPLGSYAVLLMARLLSGVGEASFVTVVPPLITDTAPPGERGLWLALFYTAQPVGAGIGYVYGSALANSCLGWPWAFYFEAFIMAPLAMACS 1081
            +F L  ++NL+N++DRG+IPG   +F  FI++TLH    D   +LG+L S FI  ++    +F  L+    PF L+A GL +WC A V  G AKP  S+ VLL  R++SG+GE+SF  + PP I D APP +R LWL +F++   VG  +GY YG+ +ANS  GW WAF+ EA +MAPL +AC+
Sbjct:  217 IFGLFCLINLLNFVDRGIIPGAPTQFQFFIKETLHVAVGDESKYLGLLASSFIASYAGFILLFGYLSIFMKPFHLVAMGLFVWCLAVVVCGSAKPANSFYVLLFGRIISGIGESSFQCIAPPFIDDHAPPAQRTLWLGVFFSCISVGTAVGYEYGALMANSAWGWGWAFHLEAIMMAPLVLACA 400
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig1089.608.1 vs. uniprot
Match: A0A1V9ZLQ6_9STRA (Major Facilitator Superfamily (MFS) n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9ZLQ6_9STRA)

HSP 1 Score: 168 bits (426), Expect = 2.040e-43
Identity = 84/183 (45.90%), Postives = 113/183 (61.75%), Query Frame = 2 
Query:  536 LFTLLAVVNLVNYIDRGVIPGGSEEFNGFIQKTLHTD--RPDVFLGVLQSGFILGFSAACFVFTSLARRRSPFSLMAAGLGMWCGAAVFAGVAKPLGSYAVLLMARLLSGVGEASFVTVVPPLITDTAPPGERGLWLALFYTAQPVGAGIGYVYGSALANSCLGWPWAFYFEAFIMAPLAMAC 1078
            LF L   +NL+NY+DRG+IPG   +F  FI++TLH D  +  V+LG+L S FI  ++    +F  L+    PF L+  GL +WC A +  G+AKP  S+ +LL  R+LSG+GE+SF  + PP I D AP   R LW+ +F+T    G  +GY YG+ LANS  GW WAFY  A  M PLA  C
Sbjct:    7 LFLLFCGINLLNYVDRGIIPGAPTQFQYFIERTLHVDVSQEGVYLGLLASSFIASYALFIMLFGYLSIFVKPFRLIGIGLLVWCVAMLLCGLAKPAQSFGLLLAGRILSGIGESSFQCIAPPFIDDYAPASTRTLWMGVFFTLTSAGTALGYAYGAVLANSSWGWDWAFYIVAIAMFPLAYIC 189
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BLAST of mRNA_E-siliculosus-1a_F_contig1089.608.1 vs. uniprot
Match: T0RNB1_SAPDV (MFS domain-containing protein n=1 Tax=Saprolegnia diclina (strain VS20) TaxID=1156394 RepID=T0RNB1_SAPDV)

HSP 1 Score: 169 bits (427), Expect = 2.330e-43
Identity = 94/189 (49.74%), Postives = 122/189 (64.55%), Query Frame = 2 
Query:  536 LFTLLAVVNLVNYIDRGVIPGGSEEFNGFIQKTLHTDRPD---VFLGVLQSGFILGFSAACFVFTSLARRRSPFSLMAAGLGMWCGAAVFAGVAKPLGSYAVLLMARLLSGVGEASFVTVVPPLITDTAPPGERGLWLALFYTAQPVGAGIGYVYGSALANSCLGWPWAFYFEAFIMAPLAMAC-SLVP 1090
            +F LL V+NL+N+IDRG+IPG   +F  FIQ+T H   PD   V+LG+L S FI  +S    +F  L+ R  PF+L A GLG+W  A V  G+AK  GS+ +LL+ RLLSGVGE+SF    P  I + APPG+R LWL +FY+    G  +GY YGS LA + LGW  AFY  A IM PL  AC +++P
Sbjct:   10 VFGLLCVINLLNFIDRGIIPGAPIQFQAFIQQT-HGVAPDHVSVYLGLLVSAFIASYSVFICIFGYLSMRHRPFTLAAIGLGLWVLALVVCGLAKTAGSFYLLLIGRLLSGVGESSFHATTPSFIDEFAPPGKRTLWLGIFYSGMSAGTALGYSYGSLLART-LGWDVAFYLIALIMLPLVYACYAMIP 196
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BLAST of mRNA_E-siliculosus-1a_F_contig1089.608.1 vs. uniprot
Match: A0A4D9D5W1_9STRA (MFS domain-containing protein n=3 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D5W1_9STRA)

HSP 1 Score: 169 bits (428), Expect = 4.300e-43
Identity = 88/185 (47.57%), Postives = 121/185 (65.41%), Query Frame = 2 
Query:  539 FTLLAVVNLVNYIDRGVIPGGSEEFNGFIQKTLHTDRPDVFLGVLQSGFILGFSAACFVFTSLARRRSPFSLMAAGLGMWCGAAVFAGVAKPLGSYAVLLMARLLSGVGEASFVTVVPPLITDTAPPGERG-LWLALFYTAQPVGAGIGYVYGSALANSCLGWPWAFYFEAFIMAPLAMACSLVP 1090
            FT L  +NL+NYIDRG+IPG +EEF+ F+  +L T  PD+F+G+LQS FI+GFS A  VF  +    +PF ++  GL +W  A   +G+A  + SY +L +AR+LSGVGEASF  V PP I D    G+ G  W+A+FYTA P+G  IGY +G+  A S   W   F+ E+F+M P A+ C L+P
Sbjct:   20 FTFLFFLNLLNYIDRGIIPGAAEEFSDFVAHSLGTSSPDLFVGLLQSAFIVGFSLAAIVFGHVIHYVAPFKMVGVGLVIWIIATALSGLAHHVASYYLLCIARMLSGVGEASFQCVAPPFILDLG--GDSGGRWVAVFYTAIPLGTAIGYPWGALFAGSPWTWAGGFWIESFLMLPFAVTCFLLP 202
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BLAST of mRNA_E-siliculosus-1a_F_contig1089.608.1 vs. uniprot
Match: A0A1V9Y4F8_9STRA (Major Facilitator Superfamily (MFS) n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9Y4F8_9STRA)

HSP 1 Score: 172 bits (435), Expect = 1.010e-42
Identity = 90/183 (49.18%), Postives = 122/183 (66.67%), Query Frame = 2 
Query:  536 LFTLLAVVNLVNYIDRGVIPGGSEEFNGFIQKTLH--TDRPDVFLGVLQSGFILGFSAACFVFTSLARRRSPFSLMAAGLGMWCGAAVFAGVAKPLGSYAVLLMARLLSGVGEASFVTVVPPLITDTAPPGERGLWLALFYTAQPVGAGIGYVYGSALANSCLGWPWAFYFEAFIMAPLAMAC 1078
            +FTLL V+NL+NY+DRG+IPG   EF GFIQ+T H  ++R   ++G+LQS FI  +S    +F  L+  R PF L A GL +W  + V  G+AKPL S+ VLL+ RL+SG+GE+SF    PP I + AP  +R LWL +FY A  VG  +G+ YGS +A++ +GW   +Y  A IMAPLA AC
Sbjct:   11 VFTLLCVINLLNYLDRGIIPGAPIEFQGFIQETHHVASNRVSFYIGLLQSSFIASYSIFICIFGYLSMTRKPFQLSAIGLFIWVLSIVLCGLAKPLESFWVLLVGRLISGIGESSFQATTPPFIDEFAPKEKRTLWLGIFYAAVSVGQALGFSYGSVMASN-VGWDIGYYITAAIMAPLAFAC 192
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BLAST of mRNA_E-siliculosus-1a_F_contig1089.608.1 vs. uniprot
Match: A0A067D6X4_SAPPC (MFS domain-containing protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067D6X4_SAPPC)

HSP 1 Score: 167 bits (422), Expect = 1.210e-42
Identity = 88/183 (48.09%), Postives = 119/183 (65.03%), Query Frame = 2 
Query:  536 LFTLLAVVNLVNYIDRGVIPGGSEEFNGFIQKT--LHTDRPDVFLGVLQSGFILGFSAACFVFTSLARRRSPFSLMAAGLGMWCGAAVFAGVAKPLGSYAVLLMARLLSGVGEASFVTVVPPLITDTAPPGERGLWLALFYTAQPVGAGIGYVYGSALANSCLGWPWAFYFEAFIMAPLAMAC 1078
            +FTLL V+NL+NY+DRG+IPG   EF  FIQ+T  + +D   V++G+LQS FI  +S    +F  L+  R PF+L A GL +W  + V  G+AKPL S+ VLL+ RL+SG+GE+SF    PP I + AP  +R LWL +FY A  VG  +G+ YGS +A +  GW   +Y  A IM PLA AC
Sbjct:   11 VFTLLCVINLLNYLDRGIIPGAPIEFQAFIQRTHNVASDGVSVYIGLLQSSFIASYSIFICIFGYLSMTRKPFTLSAIGLFIWVLSIVLCGLAKPLASFWVLLVGRLISGIGESSFQATTPPFIDEFAPKEKRTLWLGIFYAAVSVGQALGFSYGSVMAATA-GWDIGYYITAAIMVPLAFAC 192
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig1089.608.1 vs. uniprot
Match: A0A1V9YN35_9STRA (Major Facilitator Superfamily (MFS) n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YN35_9STRA)

HSP 1 Score: 166 bits (420), Expect = 1.820e-42
Identity = 88/183 (48.09%), Postives = 112/183 (61.20%), Query Frame = 2 
Query:  536 LFTLLAVVNLVNYIDRGVIPGGSEEFNGFIQKTLHTDRPDV--FLGVLQSGFILGFSAACFVFTSLARRRSPFSLMAAGLGMWCGAAVFAGVAKPLGSYAVLLMARLLSGVGEASFVTVVPPLITDTAPPGERGLWLALFYTAQPVGAGIGYVYGSALANSCLGWPWAFYFEAFIMAPLAMAC 1078
            +F LL  +NL+NY+DRG+IPG   EF  FIQ   H    +V  ++GVL S FI  +S    +F  ++  R PF L A GL +W  A V  G+A PL S+ VLL+ RLLSG+GE+SF    PP I + APP +R LWL +FY     G  +GY YGS  A + +GW W FY  AFIM PLA AC
Sbjct:   11 IFALLCAINLLNYVDRGIIPGAPVEFQLFIQTYHHVSPKNVSFYIGVLVSAFIASYSVFICIFGYMSMTRRPFLLAAIGLFIWVLAIVLCGLALPLKSFTVLLIGRLLSGIGESSFHATAPPFIDEFAPPEKRTLWLGIFYAGLSAGTAVGYSYGSITART-IGWDWGFYITAFIMFPLAYAC 192
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1089.608.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JJH2_9PHAE3.020e-20387.99Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FMS4_ECTSI3.420e-18192.76MFS domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A835YQ86_9STRA5.720e-4850.00Major facilitator superfamily domain-containing pr... [more]
A0A418AU96_9STRA4.050e-4446.20MFS domain-containing protein n=2 Tax=Aphanomyces ... [more]
A0A1V9ZLQ6_9STRA2.040e-4345.90Major Facilitator Superfamily (MFS) n=1 Tax=Thraus... [more]
T0RNB1_SAPDV2.330e-4349.74MFS domain-containing protein n=1 Tax=Saprolegnia ... [more]
A0A4D9D5W1_9STRA4.300e-4347.57MFS domain-containing protein n=3 Tax=Monodopsidac... [more]
A0A1V9Y4F8_9STRA1.010e-4249.18Major Facilitator Superfamily (MFS) n=1 Tax=Achlya... [more]
A0A067D6X4_SAPPC1.210e-4248.09MFS domain-containing protein n=2 Tax=Saprolegnia ... [more]
A0A1V9YN35_9STRA1.820e-4248.09Major Facilitator Superfamily (MFS) n=1 Tax=Achlya... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1089contigE-siliculosus-1a_F_contig1089:32817..37775 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop0
Cds size1071
Model size1388
Exons5
Ec32 orthologEc-21_000350.1
Ec32 ortholog descriptionMajor facilitator superfamily
Hectar predicted targeting categoryother localisation
BRITEko00000,ko00001,ko03029
Best eggNOG OGNA|NA|NA
Best tax levelEukaryota
COG Functional cat.EGP
EggNOG OGsCOG0477@1,KOG1330@2759
EggNOG free text desc.sphingolipid transporter activity
GOsGO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944
KEGG Pathwayko04714,map04714
KEGG koko:K09008
Seed eggNOG ortholog2880.D7FMS4
Seed ortholog evalue9.6e-152
Seed ortholog score543.1
Taxonomic scopeEukaryota
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1089.608.1prot_E-siliculosus-1a_F_contig1089.608.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig1089 33133..37775 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927589.0118322-UTR-E-siliculosus-1a_F_contig1089:32816..331321622927589.0118322-UTR-E-siliculosus-1a_F_contig1089:32816..33132Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1089 32817..33132 +
1696318599.971004-UTR-E-siliculosus-1a_F_contig1089:32816..331321696318599.971004-UTR-E-siliculosus-1a_F_contig1089:32816..33132Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1089 32817..33132 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927589.0314703-CDS-E-siliculosus-1a_F_contig1089:33132..334021622927589.0314703-CDS-E-siliculosus-1a_F_contig1089:33132..33402Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1089 33133..33402 +
1696318599.9827392-CDS-E-siliculosus-1a_F_contig1089:33132..334021696318599.9827392-CDS-E-siliculosus-1a_F_contig1089:33132..33402Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1089 33133..33402 +
1622927589.0472963-CDS-E-siliculosus-1a_F_contig1089:34220..343261622927589.0472963-CDS-E-siliculosus-1a_F_contig1089:34220..34326Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1089 34221..34326 +
1696318599.9914093-CDS-E-siliculosus-1a_F_contig1089:34220..343261696318599.9914093-CDS-E-siliculosus-1a_F_contig1089:34220..34326Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1089 34221..34326 +
1622927589.0631824-CDS-E-siliculosus-1a_F_contig1089:35456..356101622927589.0631824-CDS-E-siliculosus-1a_F_contig1089:35456..35610Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1089 35457..35610 +
1696318599.9999235-CDS-E-siliculosus-1a_F_contig1089:35456..356101696318599.9999235-CDS-E-siliculosus-1a_F_contig1089:35456..35610Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1089 35457..35610 +
1622927589.074036-CDS-E-siliculosus-1a_F_contig1089:36446..366201622927589.074036-CDS-E-siliculosus-1a_F_contig1089:36446..36620Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1089 36447..36620 +
1696318600.009398-CDS-E-siliculosus-1a_F_contig1089:36446..366201696318600.009398-CDS-E-siliculosus-1a_F_contig1089:36446..36620Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1089 36447..36620 +
1622927589.0877862-CDS-E-siliculosus-1a_F_contig1089:37408..377751622927589.0877862-CDS-E-siliculosus-1a_F_contig1089:37408..37775Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1089 37409..37775 +
1696318600.018513-CDS-E-siliculosus-1a_F_contig1089:37408..377751696318600.018513-CDS-E-siliculosus-1a_F_contig1089:37408..37775Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1089 37409..37775 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig1089.608.1

>prot_E-siliculosus-1a_F_contig1089.608.1 ID=prot_E-siliculosus-1a_F_contig1089.608.1|Name=mRNA_E-siliculosus-1a_F_contig1089.608.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=357bp
MPCGDGLDSRTTAVVPESEFHQEDSFDLKCGMTPSSAAVSSDDTERATTA
AGRKMEQCAGWIQEVRDSLRGRRLFTLLAVVNLVNYIDRGVIPGGSEEFN
GFIQKTLHTDRPDVFLGVLQSGFILGFSAACFVFTSLARRRSPFSLMAAG
LGMWCGAAVFAGVAKPLGSYAVLLMARLLSGVGEASFVTVVPPLITDTAP
PGERGLWLALFYTAQPVGAGIGYVYGSALANSCLGWPWAFYFEAFIMAPL
AMACSLVPRDRAMAVSNASDYGASPGSATTPATDTTGNRSGSPKDGESSG
TAESPKVEQGDGSPARAGSAAAVLSSVATPSPEGNLRRRPDREKKRLLGV
RGVAKGG
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mRNA from alignment at E-siliculosus-1a_F_contig1089:32817..37775+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig1089.608.1 ID=mRNA_E-siliculosus-1a_F_contig1089.608.1|Name=mRNA_E-siliculosus-1a_F_contig1089.608.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=4959bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1089:32817..37775+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
GGCTGTCTTCAAGCTGCCCACGGAGGCTGCACACCGCTAGGGATAGATCC
GGCGTTCATCCCTCCTTTACTGGGCTGGAATTTAGCATTCATTCCTTGAA
GAAACGCCTCCGGACTCTGGCAGGGTGTCACAGACAGCAGGCGACAAGCC
ACAGGCGGCCAAGATTTTAATTCCGCCGCACAACACCGGCTCTGTCTGAT
ACTCCTTCCATTAGGCGGTTAGCTGGGTGCGGACGAAGCATCATCTCCCG
AGAGACTGGGAAAGTGCTAGCCTTGGCTCTCCTCGGCAGCACAGCAGTTG
CTCGTACCCCGTTTTCATGCCGTGCGGTGATGGCCTCGATTCACGAACTA
CGGCAGTCGTACCGGAGAGCGAGTTCCACCAAGAAGATTCGTTTGACTTG
AAGTGCGGGATGACTCCTTCCTCCGCCGCCGTTAGCAGCGACGATACGGA
GAGAGCTACAACCGCTGCAGGCAGGAAGATGGAGCAGTGCGCAGGGTGGA
TCCAGGAGGTGAGGGATTCTCTGCGAGGGAGAAGACTGTTCACGCTCTTG
GCAGTGGTGAACCTGGTGAACTACATCGATCGCGGGGTGAGCGACTGCGG
TGTGGCTGGCTTCTGCCGTATCCCGACCTCTACTAAGAGTAGTAGTCGAA
GCAATAACGGCCGCTTCTTGTGTCGAGAGCTCTCGTTATGTGGATCAAAA
CCTCATGTGTTAGTACAGTACAACATGCGCTTCAAAAGTCTGCTCGTGAG
GTTAACAAGGAGGTATTGTTCGATATGTTCTTCCACACGATACTGTACGC
TTGTCATCGGACCGCAACATATTACGGATACACAAGTCTCATCGCTCGGC
TGGCATTGTTCCAGAGATAGAGCAGGTTGCGTTCTGAACTTCCGCAGCGC
TTTGTCGGATGTGTAGAGTGTCATACATTTTCTCTACCCTTCCGGTTTAT
CTGCATCAACAGAAGGTAAGTACATTGTAGGGTGAGGGCCCGCGCCAAAA
TCGATCCGCCAAGCAAGATATTGATATTGAGATACAGTATTGAGTTGCAC
GATGAACGGTTCAATTTTGGTCAACCCCGTGCGGGATATGTTTAGGGCTA
TGTACACGTAACTACAGAGACCTTCAGGGCGTTACACGATTAGTACCGTA
GGCTAACCCCCACCACATAAACATTTACCATTGCACGCAGCCTGAGGTAC
TGCAGGAAACTGATTTTTCGGCGTCAAAGTTCCGATTGTGGTTATCTACG
CCCCGTGCATGTACACACCATTAACCGCGCCACATGTGCCGTGTCATGTT
GCTGGTTTTGCAGGATGGGGCGTTTTTTGGTCTTCCTCTTCTTCAATATG
TCGAACGAGGTGTGTGTCTGCTTGTTTACATGATGACGACTGTGACTTTG
ACAGGTTATTCCCGGAGGCAGCGAGGAGTTCAACGGGTTCATCCAGAAAA
CCTTGCACACCGATCGGCCAGACGTGTTTCTCGGGGTCCTGCAGAGCGGT
TTCATCTTAGGTGCGGCACGCCAGGGCATAGCATGACATAAAAAATATTT
AGCATACGTTTTTGGAAGGCCTATTGGGTGGCACACCCTTTGGGGGCAGT
TGGCTTGTGACCACGGAAGGCGTCCGCGTCAGTTGGACCAGTACGGACAT
AAGGTACTGAGGGGAGACCGGAACGGTTTTTAATATCAAGACAACAACAA
CAATAACAACTACAACAAAATGTACCGCTGTAGCTCTGTGCGTTGACGTC
GTTCTGTCAAAACCAATCACCGCCTCTTTGGTGTCAGTAGTGCTTGCTCA
TTCGTCGATGAGTACGGTTCCCGGAACATTGTCGTTATTGTTCTGGTTCT
GTTGTGCACACCTCCAGTAGTGCCACTCTAGCCTTTCATCTTGCAGCAAC
CAAGCGCCAACGGTGCACAGCAACCTAGCCCTGCAGCAATAGCCCTACAA
CCTAGCCCTACAACCCTCACCATTCTTGCGCCGCGACTTAGCCTAAACGG
TACAGTGGCAACCTAGGACGTTAACGCGCTACAGTAGTCGGAACCGGCAT
CCAGTAGCTTCGAAAGGAAGCGCTTTATCCATAGGGGTATAATTTTTCCG
CCGTCATGGATCCTCGGGCCGTAAACTGCTGTTGCGTACGAGAAGTTTCC
TAGAAATTTATTTTCTCGTCAAAGGGCTAAGCACCGCTCTTTGGTGTCGC
CCCTAGCCCCAAAAACGCTGAACAGCGGTCAGTACTACATTACGCCAATT
TTACCCCTTGCCGTCGTCTTCGTCGTCATTCTGCCGGAGTGAGCGATGCA
GAAACACTTAACACAGAGCTCTGAGGTTAGTAGCGATGTTGGTGCTTGGC
ACGGCCATGGCGCCCATGTCGGTTGTTACGCCGTCGGCTCTGACGCAGAG
AGAGAAAGAAACACGCCTGCCACGCTGTTTTAGTTTACGCTGTCTTTTTC
TCGCCCGTAGTTTTTCCACACCAATGTTTTTCGTCCTTGTAGTCGTCGAT
CCCACGCGTCGCACGACAGGTCCAACCATTTAACGCACCTCGCATTCCGC
AGCAAAGCAACCCTAGCCCTATCCCTATCCCTATCCCCCCCTTTTCTCGA
CGGGAAACTTGACGACGACTTGACGACCATTGTGGTGCAGGTTTCAGCGC
GGCGTGCTTTGTCTTCACGAGTCTCGCGAGGCGACGGAGCCCGTTCAGTC
TCATGGCCGCCGGCCTAGGGATGTGGTGCGGGGCAGCGGTCTTCGCCGGT
GTGGCGAAACCCTTGGGGAGCTACGCGGTCCTCCTCATGGCTAGGTAGGC
AGTGCACACGCTGTTGACCATTTTTTTTTGTTTCTGGCTCTACGAAGAAA
AAAGCCCCGGTGTTTACCCCCTCCTGTGTGACCCTGGATTGTTGTAGTTG
TACGAAAAACACACTGAAAAGTGTAGTACTCTACATACACTGAAAAGTGT
AGTACACGTCTCACCACGAAAAAGGGGGGGACTGTCGCCATAATAAATAT
GCATAGGACGAAAACACAACACAACACAACACACTGTGCGGTTGCTTGCG
CCTTTTGCGGATGAGCCCACAGTGTGAAAACACTGCGGAGTAAGCACCTA
TTGTTGGATTTGCCTGTGACCATGTAGATTACGTCTATTACTCCGATTGG
GCTATATATAAAGAACGTTTTTGCTCTTTTATTGCAAAGTTTTTCACTAC
AGTTAGCGTCGGGCGCTATTCAGGAAACCCGATAAACGGTCGGAGGGCCT
TGCCTTCATTGAAATCCCGCCAATCCGATGCGTTAGTACACTGCGAAAGT
CTTAGACCCTCACACCGAAGTCGGTCATCCTTTTTCGATCGAGGGGGGAA
ATAACTACGCTCACAGGATGGCTTGCTGCCGCAAGCCACATGTCCTCCAC
GCAATCTTCCCCTGACCGATCTTCCGCTACTGCCCCTCCATCTTCCCCAC
GCTTGCTATATACGCCTTACGTTTCGCTGCTGCCCCTCTATCTTCCAAAG
TCTTATTTACTACGCCCTACGTTACGCTTTTCCCCTTATATCTTCCCAAC
TCTTACTGTCTTACCTCTCACTGCTGCACCTCCACCTTCCCAATTCTTAC
CATGCTACGCCTCACCTTACCACATGGCAGGCTGCTGTCGGGCGTGGGCG
AGGCGAGCTTCGTTACCGTGGTTCCGCCGCTTATCACGGACACGGCCCCC
CCGGGGGAGAGGGGACTGTGGCTTGCCCTCTTCTACACCGCACAGCCCGT
GGGGGCCGGAATCGGATACGTCTACGGCAGCGCCTTGGCAAACTCTTGTT
TAGGGTAAGCACGGCATGCATGCACCCGGTGGATTTTTCGTGCAGCAGAG
TTGGCCGTGTTGCTGCTGAAGCCGCAAGGGCACTCTGGTGGTATATTTGA
AATTGCCTTGCGGCAGAGTTGGCTTTACTGCTACAACCGGTAGATGGCCC
CTTTCCTGTACAGAAACAAGGGCTTTGCTTGTGGCGCTGGGGGGGTGATA
TGGTTTAGTATCCGGTGAAGTTAGTCTCGGCTACTAGTGTAGTGCCCAGG
AGGGAAAACCATCGCTTTTTTTGTTTGTTTTTTGCTGGTTTCATTCCGCC
TGGATCGATGAGGATGACCGCCCGCAGCGTCGGTGGCGTGCTCGACTGCT
GTTGCTGTTTGTCCTGGCTTCGTTCAGAAGCGCTTTTTTCGTTGCTTTGT
TGAAATCCTGTACAGCCCTTGGTTGCTTGTCCTAACTGGGTCTCCCCTCT
TATGGCCCCGAAATACTGGTGTCCAATTCGTTGTCCCCTTCTTCCACACC
ACGCAATCAATACCTTGCGAATGCCCCCCCCCCCCCCCCCCCCCCCCCCC
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCGCCCGCNNNNNNNTTGGCCC
CGCAACAGCGGGGTCCAATGCGGTTGCCCCCCCTTCCCCCCCCCCCCCCC
CATCCCCTGCCAGTGCCCCCCCCCCCCCCCCCCCCCCCCGTACCCCCATA
CTGCCATCTGCCCTCGCTCGGTACACCTCCATCTCGACTCAGCTGGCCCT
GGGCTTTCTACTTCGAGGCGTTTATTATGGCGCCGCTCGCGATGGCGTGC
TCCCTCGTCCCCCGCGACCGCGCCATGGCCGTCTCCAACGCCTCCGACTA
CGGCGCATCCCCCGGCTCAGCCACAACCCCTGCCACGGACACCACCGGAA
ACCGTAGCGGCAGCCCTAAGGATGGGGAGAGCAGCGGTACGGCTGAGTCG
CCCAAGGTGGAGCAGGGTGACGGTTCGCCGGCCAGGGCAGGGTCGGCGGC
GGCGGTTTTGTCGTCCGTGGCGACGCCTTCTCCCGAGGGAAACCTTCGTA
GACGCCCGGACAGAGAAAAGAAGCGCCTTCTTGGTGTTCGCGGTGTCGCA
AAGGGGGGG
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1089:32817..37775+

>mRNA_E-siliculosus-1a_F_contig1089.608.1 ID=mRNA_E-siliculosus-1a_F_contig1089.608.1|Name=mRNA_E-siliculosus-1a_F_contig1089.608.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=2142bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1089:32817..37775+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGCCGTGCGGTGATGGCCTCGATTCACGAACTACGGCAGTCGTACCGGA
GAGCGAGTTCCACCAAGAAGATTCGTTTGACTTGAAGTGCGGGATGACTC
CTTCCTCCGCCGCCGTTAGCAGCGACGATACGGAGAGAGCTACAACCGCT
GCAGGCAGGAAGATGGAGCAGTGCGCAGGGTGGATCCAGGAGGTGAGGGA
TTCTCTGCGAGGGAGAAGACTGTTCACGCTCTTGGCAGTGGTGAACCTGG
TGAACTACATCGATCGCGGGATGCCGTGCGGTGATGGCCTCGATTCACGA
ACTACGGCAGTCGTACCGGAGAGCGAGTTCCACCAAGAAGATTCGTTTGA
CTTGAAGTGCGGGATGACTCCTTCCTCCGCCGCCGTTAGCAGCGACGATA
CGGAGAGAGCTACAACCGCTGCAGGCAGGAAGATGGAGCAGTGCGCAGGG
TGGATCCAGGAGGTGAGGGATTCTCTGCGAGGGAGAAGACTGTTCACGCT
CTTGGCAGTGGTGAACCTGGTGAACTACATCGATCGCGGGGTTATTCCCG
GAGGCAGCGAGGAGTTCAACGGGTTCATCCAGAAAACCTTGCACACCGAT
CGGCCAGACGTGTTTCTCGGGGTCCTGCAGAGCGGTTTCATCTTAGGTTA
TTCCCGGAGGCAGCGAGGAGTTCAACGGGTTCATCCAGAAAACCTTGCAC
ACCGATCGGCCAGACGTGTTTCTCGGGGTCCTGCAGAGCGGTTTCATCTT
AGGTTTCAGCGCGGCGTGCTTTGTCTTCACGAGTCTCGCGAGGCGACGGA
GCCCGTTCAGTCTCATGGCCGCCGGCCTAGGGATGTGGTGCGGGGCAGCG
GTCTTCGCCGGTGTGGCGAAACCCTTGGGGAGCTACGCGGTCCTCCTCAT
GGCTAGGTTTCAGCGCGGCGTGCTTTGTCTTCACGAGTCTCGCGAGGCGA
CGGAGCCCGTTCAGTCTCATGGCCGCCGGCCTAGGGATGTGGTGCGGGGC
AGCGGTCTTCGCCGGTGTGGCGAAACCCTTGGGGAGCTACGCGGTCCTCC
TCATGGCTAGGCTGCTGTCGGGCGTGGGCGAGGCGAGCTTCGTTACCGTG
GTTCCGCCGCTTATCACGGACACGGCCCCCCCGGGGGAGAGGGGACTGTG
GCTTGCCCTCTTCTACACCGCACAGCCCGTGGGGGCCGGAATCGGATACG
TCTACGGCAGCGCCTTGGCAAACTCTTGTTTAGGGCTGCTGTCGGGCGTG
GGCGAGGCGAGCTTCGTTACCGTGGTTCCGCCGCTTATCACGGACACGGC
CCCCCCGGGGGAGAGGGGACTGTGGCTTGCCCTCTTCTACACCGCACAGC
CCGTGGGGGCCGGAATCGGATACGTCTACGGCAGCGCCTTGGCAAACTCT
TGTTTAGGCTGGCCCTGGGCTTTCTACTTCGAGGCGTTTATTATGGCGCC
GCTCGCGATGGCGTGCTCCCTCGTCCCCCGCGACCGCGCCATGGCCGTCT
CCAACGCCTCCGACTACGGCGCATCCCCCGGCTCAGCCACAACCCCTGCC
ACGGACACCACCGGAAACCGTAGCGGCAGCCCTAAGGATGGGGAGAGCAG
CGGTACGGCTGAGTCGCCCAAGGTGGAGCAGGGTGACGGTTCGCCGGCCA
GGGCAGGGTCGGCGGCGGCGGTTTTGTCGTCCGTGGCGACGCCTTCTCCC
GAGGGAAACCTTCGTAGACGCCCGGACAGAGAAAAGAAGCGCCTTCTTGG
TGTTCGCGGTGTCGCAAAGGGGGGGCTGGCCCTGGGCTTTCTACTTCGAG
GCGTTTATTATGGCGCCGCTCGCGATGGCGTGCTCCCTCGTCCCCCGCGA
CCGCGCCATGGCCGTCTCCAACGCCTCCGACTACGGCGCATCCCCCGGCT
CAGCCACAACCCCTGCCACGGACACCACCGGAAACCGTAGCGGCAGCCCT
AAGGATGGGGAGAGCAGCGGTACGGCTGAGTCGCCCAAGGTGGAGCAGGG
TGACGGTTCGCCGGCCAGGGCAGGGTCGGCGGCGGCGGTTTTGTCGTCCG
TGGCGACGCCTTCTCCCGAGGGAAACCTTCGTAGACGCCCGGACAGAGAA
AAGAAGCGCCTTCTTGGTGTTCGCGGTGTCGCAAAGGGGGGG
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