prot_E-siliculosus-1a_F_contig1089.606.1 (polypeptide) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_E-siliculosus-1a_F_contig1089.606.1
Unique Nameprot_E-siliculosus-1a_F_contig1089.606.1
Typepolypeptide
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Sequence length354
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1089.606.1 vs. uniprot
Match: D7FMS6_ECTSI (DNA-directed RNA polymerase III subunit RPC3 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMS6_ECTSI)

HSP 1 Score: 525 bits (1351), Expect = 1.080e-185
Identity = 295/353 (83.57%), Postives = 300/353 (84.99%), Query Frame = 0
Query:    1 MDGVFEEEGEGGHAEEEDVLGGRGGGIGAGATVLDSVLWKLGFDKFHRDFRNLALLGLVQDRFPKSKLAYLVVKVMLDSSAPTERKVDEPVSASISARDLFDKLCEAWQTSNLTKNKAVPDWRRFVSWMSALCTDLTSMVSKIPGSDTQNPRYVVNMAKMVQYIRSNLVKCTARDRYGKETARIMEARRKINYPRCSAAARLYCILLQNKYLDQQQVGEMAMIPPSDARERLYRLLKDRMVSVQEVPKRADRNPNTTFYLWTIKHDQVAQVVLESLYKAMLNMRLRRKFVYSNDKACCSRLEFDAYALFIHDAAARLSNDAERERLDQVRXXXXXXXXXXXXXXENLMFFNTF 353
            MDGVFEEEGEGGHAEEE VLGG    IGAGATVLDSVLWKLGFDKFHRDFRNLALLGLVQDRFPKSKLAYLVVKVMLD+S+PTERKVDE VSASISARDLFDKLCEAWQT+NLTKNKAVPDWRRFVSWMSALCTDLTSMVSKIPGSDTQNPRYVVNMAKMVQYIR NLVKCTARDRYGKETARIME                  ILLQNKYLDQQQVGEMAMIPPSDARERLYRL++DRMVSVQEVPKRADRNPNTTFYLWTIKHDQVAQVVLESLYKAMLNMRLRRKFVYSNDKA           LFIHDA                 XXXXXXXXXXXXXXENLMFFNTF
Sbjct:    1 MDGVFEEEGEGGHAEEEGVLGGXXXXIGAGATVLDSVLWKLGFDKFHRDFRNLALLGLVQDRFPKSKLAYLVVKVMLDNSSPTERKVDEQVSASISARDLFDKLCEAWQTNNLTKNKAVPDWRRFVSWMSALCTDLTSMVSKIPGSDTQNPRYVVNMAKMVQYIRGNLVKCTARDRYGKETARIME------------------ILLQNKYLDQQQVGEMAMIPPSDARERLYRLVRDRMVSVQEVPKRADRNPNTTFYLWTIKHDQVAQVVLESLYKAMLNMRLRRKFVYSNDKA-----------LFIHDAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXENLMFFNTF 324          
BLAST of mRNA_E-siliculosus-1a_F_contig1089.606.1 vs. uniprot
Match: H3GD40_PHYRM (DNA-directed RNA polymerase III subunit RPC3 n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GD40_PHYRM)

HSP 1 Score: 149 bits (377), Expect = 9.780e-37
Identity = 88/285 (30.88%), Postives = 155/285 (54.39%), Query Frame = 0
Query:   28 GAGATVLD-SVLWKLGFDKFHRDFRNLALLGLVQDRFPKSKLAYLVVKVMLDSSAPTERKVDEPVSASISARDLFDKLCEAWQTSNLTKNKAVPDWRRFVSWMSALCTDLTSMVSKIPGSDTQNP---------RYVVNMAKMVQYIRSNLVKCTARDRYGKETARIMEARRKINYPRCSAAARLYCILLQNKYLDQQQVGEMAMIPPSDARERLYRLLKDRMVSVQEVPKRADRNPNTTFYLWTIKHDQVAQVVLESLYKAMLNMRLRRKFVYSNDKACCSRLE 302
            G+GAT  + S++W+ G  +  RD R+ A +    +    + +A ++V+ ML  S+P ER+ DEP S  +SARDLF    E         ++A   WR  ++++  +C D + MV K+   +  +P         +YVV+M K+V++++    +   +D+YG  +ARI+                   +L++ + L+Q+ +GE+A++P +DAR RLY L  D+++ +QE+PKRAD NP  TF+ W++   Q+   + E +  ++  +R RRKF    +K   +R E
Sbjct:  310 GSGATTDERSLVWRFGVTQLLRDLRHKACIKFATENI--NAVAGVIVEAMLQHSSPREREKDEPTSFPVSARDLF----EMESVKKALPSEANNPWRLLLNYIMVMCRDKSGMVMKV-SQEAFDPTQARSGDGGQYVVHMQKIVEFLQQATTRAYIQDKYGVASARIVR------------------LLMEKRQLEQKTIGELALLPSNDARHRLYELYTDKLLKMQEIPKRADHNPAFTFFCWSVDVPQMQTRIAERVQDSLCRLRRRRKFEAEENKELIARSE 569          
BLAST of mRNA_E-siliculosus-1a_F_contig1089.606.1 vs. uniprot
Match: A0A0W8C9C8_PHYNI (DNA-directed RNA polymerase III subunit RPC3 n=12 Tax=Phytophthora TaxID=4783 RepID=A0A0W8C9C8_PHYNI)

HSP 1 Score: 149 bits (376), Expect = 2.180e-36
Identity = 91/285 (31.93%), Postives = 153/285 (53.68%), Query Frame = 0
Query:   28 GAGA-TVLDSVLWKLGFDKFHRDFRNLALLGLVQDRFPKSKLAYLVVKVMLDSSAPTERKVDEPVSASISARDLFDKLCEAWQTSNLTKNKAVPDWRRFVSWMSALCTDLTSMVSKIPGSDTQNP---------RYVVNMAKMVQYIRSNLVKCTARDRYGKETARIMEARRKINYPRCSAAARLYCILLQNKYLDQQQVGEMAMIPPSDARERLYRLLKDRMVSVQEVPKRADRNPNTTFYLWTIKHDQVAQVVLESLYKAMLNMRLRRKFVYSNDKACCSRLE 302
            G+GA T   S++W+ G  +  RD R+ A +    +    + +A ++V  ML  SAP ER+ DEP SA +SARDLF+         N    +A   WR  ++++  +C D + MV K+   +  +P         +YVV+M K+V++++        +D+YG  +ARI+                   +L++ + L+Q+ +GE+A++P +DAR RLY L  D+++ +QE+PKRAD NP  TF+ W++   Q+   V E +  ++  +R RRKF    +K   +R E
Sbjct:  372 GSGAHTDERSLVWRFGVTQLLRDLRHKACIRFATENI--NAVAGVIVTAMLQHSAPREREKDEPTSAPVSARDLFNME----SVKNALPPEANNPWRLLLNYIMVMCRDKSGMVMKV-AQEAFDPIQARAGDGGQYVVHMQKIVEFLQQATTHAYIQDKYGVASARIVR------------------LLMEKRQLEQKTIGELALLPSNDARHRLYELYTDKLLKMQEIPKRADHNPAFTFFCWSVDVPQMQARVTERVQDSLCRLRRRRKFEAEENKELIARSE 631          
BLAST of mRNA_E-siliculosus-1a_F_contig1089.606.1 vs. uniprot
Match: A0A0P1AWK6_PLAHL (DNA-directed RNA polymerase III subunit RPC3 n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1AWK6_PLAHL)

HSP 1 Score: 146 bits (369), Expect = 1.630e-35
Identity = 92/305 (30.16%), Postives = 159/305 (52.13%), Query Frame = 0
Query:   32 TVLDSVLWKLGFDKFHRDFRNLALLGLVQDRFPKSKLAYLVVKVMLDSSAPTERKVDEPVSASISARDLFDKLCEAWQTSNLTKNKAVPD-----WRRFVSWMSALCTDLTSMVSKIP--------GSDTQNPRYVVNMAKMVQYIRSNLVKCTARDRYGKETARIMEARRKINYPRCSAAARLYCILLQNKYLDQQQVGEMAMIPPSDARERLYRLLKDRMVSVQEVPKRADRNPNTTFYLWTIKHDQVAQVVLESLYKAMLNMRLRRKFVYSNDKACCSRLEFDAYALFIHDAAARLSNDAER 323
            T   S++W+ G  +  RD R+   +    +    + +A ++V+ ML  S+P ER+ DE  SA +SARDLF+           +  KA+P      WR  +++++ +C D + M+ K+            +   +YVV+M K+V++++   V    +D+YG  +ARI+                   +L++ + L+Q+ +GE+A++P +DAR RLY L  D++V +QE+PKRAD NP  TF+ W++   Q+   + E +  ++  +R RRKF    +K   +R E    AL I D   +LS   +R
Sbjct:  349 TDETSLVWRFGMTQMLRDLRHKTCIRFASENI--NAVAGVIVEAMLQHSSPREREKDEATSAPVSARDLFNME---------SVKKALPSESNNPWRLLLNYITVMCRDKSGMIMKVAQEAFDPTKARASDGGQYVVHMQKIVEFLQQATVHAYIQDKYGVASARIVR------------------LLMEKRQLEQKSIGELALLPSNDARHRLYELYTDKLVKLQEIPKRADHNPAFTFFCWSVDVLQMQTRITERVQDSLCRLRRRRKFEAEENKELIARSEQLVEALDI-DKFDKLSRSLDR 623          
BLAST of mRNA_E-siliculosus-1a_F_contig1089.606.1 vs. uniprot
Match: A0A3R7FY14_9STRA (DNA-directed RNA polymerase III subunit RPC3 n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7FY14_9STRA)

HSP 1 Score: 145 bits (367), Expect = 3.290e-35
Identity = 87/285 (30.53%), Postives = 152/285 (53.33%), Query Frame = 0
Query:   28 GAGATVLD--SVLWKLGFDKFHRDFRNLALLGLVQDRFPKSKLAYLVVKVMLDSSAPTERKVDEPVSASISARDLFDKLCEAWQTSNLTKNKAVPDWRRFVSWMSALCTDLTSMVSKIPGS--DTQNPR------YVVNMAKMVQYIRSNLVKCTARDRYGKETARIMEARRKINYPRCSAAARLYCILLQNKYLDQQQVGEMAMIPPSDARERLYRLLKDRMVSVQEVPKRADRNPNTTFYLWTIKHDQVAQVVLESLYKAMLNMRLRRKFVYSNDKACCSRLE 302
            G+ A  +D  S++W+ G  +  RD R+ A +    +    + +A ++V  ML  SAP ER+ DEP+SA +SARDLF          N   +++   WR  ++++  +C D + MV K+     D    R      YVV+M K+V++++        +D++G                  +A+AR+  +L++ + L+Q+ +GE+A++P +DAR RLY L  +++V +QE+PKRAD NP  TF+ W++    +   + E +  ++  +R RRKF    +K   +R E
Sbjct:  353 GSSAVDMDERSLVWRFGVTQLLRDLRHKACIKFATENI--NAVAGVIVAAMLQHSAPREREKDEPISAPVSARDLFGME----SVKNALPSESNNPWRLLLNYIMVMCRDKSGMVMKVAQEAFDPSQARSGDGGQYVVHMQKIVEFLQQVTTHAYIQDKFG------------------AASARIVRLLMEKRQLEQKTIGELALLPSNDARHRLYELYGEKLVKMQEIPKRADHNPAFTFFCWSVDVPHMQTRITERVQDSLCRLRRRRKFEAEENKELIARSE 613          
BLAST of mRNA_E-siliculosus-1a_F_contig1089.606.1 vs. uniprot
Match: G4Z0C0_PHYSP (DNA-directed RNA polymerase III subunit RPC3 (Fragment) n=5 Tax=Phytophthora TaxID=4783 RepID=G4Z0C0_PHYSP)

HSP 1 Score: 145 bits (365), Expect = 4.200e-35
Identity = 90/290 (31.03%), Postives = 154/290 (53.10%), Query Frame = 0
Query:   28 GAGA-TVLDSVLWKLGFDKFHRDFRNLALLGLVQDRFPKSKLAYLVVKVMLDSSAPTERKVDEPVSASISARDLFDKLCEAWQTSNLTKNKAVPD-----WRRFVSWMSALCTDLTSMVSKIPGSDTQNP---------RYVVNMAKMVQYIRSNLVKCTARDRYGKETARIMEARRKINYPRCSAAARLYCILLQNKYLDQQQVGEMAMIPPSDARERLYRLLKDRMVSVQEVPKRADRNPNTTFYLWTIKHDQVAQVVLESLYKAMLNMRLRRKFVYSNDKACCSRLE 302
            G+GA T   S++W+ G  +  RD R+ A +    +    + +A ++V  ML  S+P ER+ DEP S  +SARDLFD           +  KA+P      WR  ++++  +C D + MV K+   +  +P         +YVV+M K+V++++        +D+YG  +ARI+                   +L++ + L+Q+ +GE+A++P +DAR RLY L  D+++ +QE+PKRAD NP  TF+ W++   Q+   + E +  ++  +R RRKF    +K   +R E
Sbjct:  303 GSGAHTDERSLVWRFGVTQLLRDLRHKACIRFATENI--NAVAGVIVAAMLQHSSPREREKDEPTSFPVSARDLFDME---------SVKKALPPEANNPWRLLLNYIMVMCRDKSGMVMKV-AQEAFDPTQTRAGDGGQYVVHMQKIVEFLQQATTHAYIQDKYGVASARIVR------------------LLMEKRQLEQKTIGELALLPSNDARHRLYELYTDKLLKMQEIPKRADHNPAFTFFCWSVDVPQMQARITERVQDSLCRLRRRRKFEAEENKELIARSE 562          
BLAST of mRNA_E-siliculosus-1a_F_contig1089.606.1 vs. uniprot
Match: A0A5D6XL36_9STRA (DNA-directed RNA polymerase III subunit RPC3 n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XL36_9STRA)

HSP 1 Score: 137 bits (345), Expect = 3.390e-32
Identity = 88/284 (30.99%), Postives = 147/284 (51.76%), Query Frame = 0
Query:   26 GIGAGATVLDSVL-WKLGFDKFHRDFRNLALLGLVQDRFPKSKLAYLVVKVMLDSSAPTERKVDEPVSASISARDLFDKLCEAWQTSNLTKNKAVPDWRRFVSWMSALCTDLTSMVSKIPGS--DTQNPR------YVVNMAKMVQYIRSNLVKCTARDRYGKETARIMEARRKINYPRCSAAARLYCILLQNKYLDQQQVGEMAMIPPSDARERLYRLLKDRMVSVQEVPKRADRNPNTTFYLWTIKHDQVAQVVLESLYKAMLNMRLRRKFVYSNDKACCSR 300
            G+ AG  + +  L W+ G D+  RD R+ A +    +    + +A ++V  ML  S+P ER+ DE  S  ++AR+LF         S L K+     WR  +++++ +C D + MV K+     D    R      YVV+M K+V ++R        +D++G  +ARI+                   +L++ + L+QQ +GE+A++P +DAR RLY L  +R+V +QEVPKRAD NP  T Y W++   ++ + V E +  ++  +R RRK     +K   +R
Sbjct:  363 GMAAGGALAEQALVWRFGADQLMRDLRHAACVRFATENI--NTVAGVIVAAMLQHSSPHEREKDEATSYPVTARELFAVPAVK---SALPKDSK-DTWRLLLNYITVMCRDKSGMVMKVAPETFDATQARAGDGGQYVVHMQKIVAFLRQATTHAYVQDKFGVPSARIVR------------------LLVEKRQLEQQTIGELALLPSNDARRRLYELFAERLVKLQEVPKRADHNPAFTLYCWSVDVPRMERSVRERVEASLCKLRARRKLEAEQNKELIAR 622          
BLAST of mRNA_E-siliculosus-1a_F_contig1089.606.1 vs. uniprot
Match: A0A662YGR9_9STRA (DNA-directed RNA polymerase III subunit RPC3 (Fragment) n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662YGR9_9STRA)

HSP 1 Score: 135 bits (341), Expect = 9.970e-32
Identity = 83/280 (29.64%), Postives = 146/280 (52.14%), Query Frame = 0
Query:   36 SVLWKLGFDKFHRDFRNLALLGLVQDRFPKSKLAYLVVKVMLDSSAPTERKVDEPVSASISARDLFDKLCEAWQTSNLTKNKAVPD----WRRFVSWMSALCTDLTSMVSKIPGSDTQNP---------RYVVNMAKMVQYIRSNLVKCTARDRYGKETARIMEARRKINYPRCSAAARLYCILLQNKYLDQQQVGEMAMIPPSDARERLYRLLKDRMVSVQEVPKRADRNPNTTFYLWTIKHDQVAQVVLESLYKAMLNMRLRRKFVYSNDKACCSRLE 302
            S++W+ G  +  RD R+ A +    +    + +A ++V  ML  S+P ER+ DEP S  +SAR+LF             K+   P+    WR  ++++  +C D + MV K+   +T +P         +YVV+M K+V+++R        +D++G  +ARI+                   +L++ + L+Q+ +GE+A++P +D R RLY L  +++V +QEVPKRAD NP  TF+ W++   ++   V E +  ++  +R RRK     +K   +R E
Sbjct:  364 SLVWRFGAAQLLRDLRHKACIKFASENI--NAVAGVIVAAMLQHSSPREREKDEPTSFPVSARELF--------AMESVKSALPPESNNPWRLLLNYIMVMCRDKSGMVMKV-SQETFDPNQTRAGDGGQYVVHMQKIVEFLRQATTHAYVQDKFGVASARIVR------------------LLVEKRQLEQKAIGELALLPSNDVRRRLYELFAEKLVKMQEVPKRADHNPALTFFCWSVDVPRMQARVAERIQDSVCRLRRRRKAEADENKELIARSE 614          
BLAST of mRNA_E-siliculosus-1a_F_contig1089.606.1 vs. uniprot
Match: A0A484E8N6_BRELC (DNA-directed RNA polymerase III subunit RPC3 n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484E8N6_BRELC)

HSP 1 Score: 135 bits (339), Expect = 2.020e-31
Identity = 82/280 (29.29%), Postives = 149/280 (53.21%), Query Frame = 0
Query:   36 SVLWKLGFDKFHRDFRNLALLGLVQDRFPKSKLAYLVVKVMLDSSAPTERKVDEPVSASISARDLFDKLCEAWQTSNLTKNKAVPD-----WRRFVSWMSALCTDLTSMVSKIPGS--DTQNPR------YVVNMAKMVQYIRSNLVKCTARDRYGKETARIMEARRKINYPRCSAAARLYCILLQNKYLDQQQVGEMAMIPPSDARERLYRLLKDRMVSVQEVPKRADRNPNTTFYLWTIKHDQVAQVVLESLYKAMLNMRLRRKFVYSNDKACCSRLE 302
            S++W+ G  +  R+ R+ A +    +    + +A ++V  ML+ S+P ER+ +E  SA +SARDL++           T  KA+P      WR  +++++ +C D + M+ K+     D+   R      YVV+M K+V++++        +DR+G  +ARI+                   +L++ + L+Q+ +GE+A++P ++AR RLY L  D++V +QE+PKRAD NP  TF+ W++   Q+   + E +  ++  +R RR F    +K   +R E
Sbjct:  358 SLVWRFGMTQMLRELRHKACIRFATENV--NAVAGVIVTAMLEHSSPRERESNESTSAPVSARDLYNME---------TVKKALPSEANNPWRLLLNYITVMCRDKSGMMMKVAQETFDSTQARAGDGGQYVVHMQKIVEFLQQATTHAYIQDRFGVASARIVR------------------LLIEKRQLEQKTIGELALLPSNEARHRLYELYTDKLVKMQEIPKRADHNPAFTFFCWSVDIPQMHVRITERVQGSLCRLRRRRTFEAEENKELIARSE 608          
BLAST of mRNA_E-siliculosus-1a_F_contig1089.606.1 vs. uniprot
Match: W7U6Z3_9STRA (DNA-directed RNA polymerase III subunit RPC3 n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7U6Z3_9STRA)

HSP 1 Score: 128 bits (321), Expect = 6.140e-29
Identity = 87/264 (32.95%), Postives = 136/264 (51.52%), Query Frame = 0
Query:   27 IGAGATVLDSVLWKLGFDKFHRDFRNLALLGLVQDRFPKSKLAYLVVKVMLDSSAPTERK--VDEPVSASISARDLFDKLCEAWQTSNLTKNKAVPDWRRFVSWMSALCTDLTSMVSKIPGSDTQNPRYVVNMAKMVQYIRSNLVKCTARDRYGKETARIMEARRKINYPRCSAAARLYCILLQNKYLDQQQVGEMAMIPPSDARERLYRLLKDRMVSVQEVPKRADRNPNTTFYLWTIKHDQVAQVVLESLYKAMLNMRLRRK 288
            +GAG    D VLW++G ++FHRD R++  L  V+ +   +  A  +V+ +L  S P ER   V  P S  +S  +L  ++        L  N  V        ++  L  D   +V +     T    Y V + ++++ +R   +    R+RY  ++      R           AR+  +LL  KYLD QQV E+AM+   + RERLYR+  D +++VQE+P+RAD +PN TFYLWT    QV + + + +YK  LN+RLRR+
Sbjct:  409 VGAG----DEVLWRVGVEQFHRDLRHVTCLRFVRQKV--NTTAESLVRAILQHSLPLERDGTVAPPRSQPLSLGELSSRV-------QLPPNVTVK------MYLEVLQNDPVQIVDR---EGTATDVYCVCLGRIIESLRQRTLHSIIRERYTTDSKACDGDRN----------ARICRVLLDKKYLDPQQVSELAMMSLRETRERLYRMYADLLLTVQEIPRRADHHPNQTFYLWTFNMQQVVEELTQRMYKGALNLRLRRQ 640          
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1089.606.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FMS6_ECTSI1.080e-18583.57DNA-directed RNA polymerase III subunit RPC3 n=1 T... [more]
H3GD40_PHYRM9.780e-3730.88DNA-directed RNA polymerase III subunit RPC3 n=1 T... [more]
A0A0W8C9C8_PHYNI2.180e-3631.93DNA-directed RNA polymerase III subunit RPC3 n=12 ... [more]
A0A0P1AWK6_PLAHL1.630e-3530.16DNA-directed RNA polymerase III subunit RPC3 n=1 T... [more]
A0A3R7FY14_9STRA3.290e-3530.53DNA-directed RNA polymerase III subunit RPC3 n=3 T... [more]
G4Z0C0_PHYSP4.200e-3531.03DNA-directed RNA polymerase III subunit RPC3 (Frag... [more]
A0A5D6XL36_9STRA3.390e-3230.99DNA-directed RNA polymerase III subunit RPC3 n=1 T... [more]
A0A662YGR9_9STRA9.970e-3229.64DNA-directed RNA polymerase III subunit RPC3 (Frag... [more]
A0A484E8N6_BRELC2.020e-3129.29DNA-directed RNA polymerase III subunit RPC3 n=1 T... [more]
W7U6Z3_9STRA6.140e-2932.95DNA-directed RNA polymerase III subunit RPC3 n=2 T... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0 of Ectocarpus siliculosus 1a female
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 319..346
IPR036388Winged helix-like DNA-binding domain superfamilyGENE3D1.10.10.10coord: 196..264
e-value: 6.4E-23
score: 82.4
IPR039748DNA-directed RNA polymerase III subunit RPC3PANTHERPTHR12949RNA POLYMERASE III DNA DIRECTED -RELATEDcoord: 35..187
coord: 197..352
IPR036390Winged helix DNA-binding domain superfamilySUPERFAMILY46785"Winged helix" DNA-binding domaincoord: 202..268

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1089contigE-siliculosus-1a_F_contig1089:18830..24257 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Ectocarpus siliculosus 1a female2022-09-29
Diamond blastp: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-16
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1089.606.1mRNA_E-siliculosus-1a_F_contig1089.606.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalemRNAE-siliculosus-1a_F_contig1089 18830..24257 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_E-siliculosus-1a_F_contig1089.606.1 ID=prot_E-siliculosus-1a_F_contig1089.606.1|Name=mRNA_E-siliculosus-1a_F_contig1089.606.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=354bp
MDGVFEEEGEGGHAEEEDVLGGRGGGIGAGATVLDSVLWKLGFDKFHRDF
RNLALLGLVQDRFPKSKLAYLVVKVMLDSSAPTERKVDEPVSASISARDL
FDKLCEAWQTSNLTKNKAVPDWRRFVSWMSALCTDLTSMVSKIPGSDTQN
PRYVVNMAKMVQYIRSNLVKCTARDRYGKETARIMEARRKINYPRCSAAA
RLYCILLQNKYLDQQQVGEMAMIPPSDARERLYRLLKDRMVSVQEVPKRA
DRNPNTTFYLWTIKHDQVAQVVLESLYKAMLNMRLRRKFVYSNDKACCSR
LEFDAYALFIHDAAARLSNDAERERLDQVRRSLDRLDTALLRLDENLMFF
NTF*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR036390WH_DNA-bd_sf
IPR039748RPC3
IPR036388WH-like_DNA-bd_sf