mRNA_E-siliculosus-1a_F_contig1089.606.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1089.606.1 vs. uniprot
Match: D7FMS6_ECTSI (DNA-directed RNA polymerase III subunit RPC3 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMS6_ECTSI) HSP 1 Score: 525 bits (1351), Expect = 1.080e-185 Identity = 295/353 (83.57%), Postives = 300/353 (84.99%), Query Frame = 1 Query: 1 MDGVFEEEGEGGHAEEEDVLGGRGGGIGAGATVLDSVLWKLGFDKFHRDFRNLALLGLVQDRFPKSKLAYLVVKVMLDSSAPTERKVDEPVSASISARDLFDKLCEAWQTSNLTKNKAVPDWRRFVSWMSALCTDLTSMVSKIPGSDTQNPRYVVNMAKMVQYIRSNLVKCTARDRYGKETARIMEARRKINYPRCSAAARLYCILLQNKYLDQQQVGEMAMIPPSDARERLYRLLKDRMVSVQEVPKRADRNPNTTFYLWTIKHDQVAQVVLESLYKAMLNMRLRRKFVYSNDKACCSRLEFDAYALFIHDAAARLSNDAERERLDQVRXXXXXXXXXXXXXXENLMFFNTF 1059 MDGVFEEEGEGGHAEEE VLGG IGAGATVLDSVLWKLGFDKFHRDFRNLALLGLVQDRFPKSKLAYLVVKVMLD+S+PTERKVDE VSASISARDLFDKLCEAWQT+NLTKNKAVPDWRRFVSWMSALCTDLTSMVSKIPGSDTQNPRYVVNMAKMVQYIR NLVKCTARDRYGKETARIME ILLQNKYLDQQQVGEMAMIPPSDARERLYRL++DRMVSVQEVPKRADRNPNTTFYLWTIKHDQVAQVVLESLYKAMLNMRLRRKFVYSNDKA LFIHDA XXXXXXXXXXXXXXENLMFFNTF Sbjct: 1 MDGVFEEEGEGGHAEEEGVLGGXXXXIGAGATVLDSVLWKLGFDKFHRDFRNLALLGLVQDRFPKSKLAYLVVKVMLDNSSPTERKVDEQVSASISARDLFDKLCEAWQTNNLTKNKAVPDWRRFVSWMSALCTDLTSMVSKIPGSDTQNPRYVVNMAKMVQYIRGNLVKCTARDRYGKETARIME------------------ILLQNKYLDQQQVGEMAMIPPSDARERLYRLVRDRMVSVQEVPKRADRNPNTTFYLWTIKHDQVAQVVLESLYKAMLNMRLRRKFVYSNDKA-----------LFIHDAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXENLMFFNTF 324
BLAST of mRNA_E-siliculosus-1a_F_contig1089.606.1 vs. uniprot
Match: H3GD40_PHYRM (DNA-directed RNA polymerase III subunit RPC3 n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GD40_PHYRM) HSP 1 Score: 149 bits (377), Expect = 9.780e-37 Identity = 88/285 (30.88%), Postives = 155/285 (54.39%), Query Frame = 1 Query: 82 GAGATVLD-SVLWKLGFDKFHRDFRNLALLGLVQDRFPKSKLAYLVVKVMLDSSAPTERKVDEPVSASISARDLFDKLCEAWQTSNLTKNKAVPDWRRFVSWMSALCTDLTSMVSKIPGSDTQNP---------RYVVNMAKMVQYIRSNLVKCTARDRYGKETARIMEARRKINYPRCSAAARLYCILLQNKYLDQQQVGEMAMIPPSDARERLYRLLKDRMVSVQEVPKRADRNPNTTFYLWTIKHDQVAQVVLESLYKAMLNMRLRRKFVYSNDKACCSRLE 906 G+GAT + S++W+ G + RD R+ A + + + +A ++V+ ML S+P ER+ DEP S +SARDLF E ++A WR ++++ +C D + MV K+ + +P +YVV+M K+V++++ + +D+YG +ARI+ +L++ + L+Q+ +GE+A++P +DAR RLY L D+++ +QE+PKRAD NP TF+ W++ Q+ + E + ++ +R RRKF +K +R E Sbjct: 310 GSGATTDERSLVWRFGVTQLLRDLRHKACIKFATENI--NAVAGVIVEAMLQHSSPREREKDEPTSFPVSARDLF----EMESVKKALPSEANNPWRLLLNYIMVMCRDKSGMVMKV-SQEAFDPTQARSGDGGQYVVHMQKIVEFLQQATTRAYIQDKYGVASARIVR------------------LLMEKRQLEQKTIGELALLPSNDARHRLYELYTDKLLKMQEIPKRADHNPAFTFFCWSVDVPQMQTRIAERVQDSLCRLRRRRKFEAEENKELIARSE 569
BLAST of mRNA_E-siliculosus-1a_F_contig1089.606.1 vs. uniprot
Match: A0A0W8C9C8_PHYNI (DNA-directed RNA polymerase III subunit RPC3 n=12 Tax=Phytophthora TaxID=4783 RepID=A0A0W8C9C8_PHYNI) HSP 1 Score: 149 bits (376), Expect = 2.180e-36 Identity = 91/285 (31.93%), Postives = 153/285 (53.68%), Query Frame = 1 Query: 82 GAGA-TVLDSVLWKLGFDKFHRDFRNLALLGLVQDRFPKSKLAYLVVKVMLDSSAPTERKVDEPVSASISARDLFDKLCEAWQTSNLTKNKAVPDWRRFVSWMSALCTDLTSMVSKIPGSDTQNP---------RYVVNMAKMVQYIRSNLVKCTARDRYGKETARIMEARRKINYPRCSAAARLYCILLQNKYLDQQQVGEMAMIPPSDARERLYRLLKDRMVSVQEVPKRADRNPNTTFYLWTIKHDQVAQVVLESLYKAMLNMRLRRKFVYSNDKACCSRLE 906 G+GA T S++W+ G + RD R+ A + + + +A ++V ML SAP ER+ DEP SA +SARDLF+ N +A WR ++++ +C D + MV K+ + +P +YVV+M K+V++++ +D+YG +ARI+ +L++ + L+Q+ +GE+A++P +DAR RLY L D+++ +QE+PKRAD NP TF+ W++ Q+ V E + ++ +R RRKF +K +R E Sbjct: 372 GSGAHTDERSLVWRFGVTQLLRDLRHKACIRFATENI--NAVAGVIVTAMLQHSAPREREKDEPTSAPVSARDLFNME----SVKNALPPEANNPWRLLLNYIMVMCRDKSGMVMKV-AQEAFDPIQARAGDGGQYVVHMQKIVEFLQQATTHAYIQDKYGVASARIVR------------------LLMEKRQLEQKTIGELALLPSNDARHRLYELYTDKLLKMQEIPKRADHNPAFTFFCWSVDVPQMQARVTERVQDSLCRLRRRRKFEAEENKELIARSE 631
BLAST of mRNA_E-siliculosus-1a_F_contig1089.606.1 vs. uniprot
Match: A0A0P1AWK6_PLAHL (DNA-directed RNA polymerase III subunit RPC3 n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1AWK6_PLAHL) HSP 1 Score: 146 bits (369), Expect = 1.630e-35 Identity = 92/305 (30.16%), Postives = 159/305 (52.13%), Query Frame = 1 Query: 94 TVLDSVLWKLGFDKFHRDFRNLALLGLVQDRFPKSKLAYLVVKVMLDSSAPTERKVDEPVSASISARDLFDKLCEAWQTSNLTKNKAVPD-----WRRFVSWMSALCTDLTSMVSKIP--------GSDTQNPRYVVNMAKMVQYIRSNLVKCTARDRYGKETARIMEARRKINYPRCSAAARLYCILLQNKYLDQQQVGEMAMIPPSDARERLYRLLKDRMVSVQEVPKRADRNPNTTFYLWTIKHDQVAQVVLESLYKAMLNMRLRRKFVYSNDKACCSRLEFDAYALFIHDAAARLSNDAER 969 T S++W+ G + RD R+ + + + +A ++V+ ML S+P ER+ DE SA +SARDLF+ + KA+P WR +++++ +C D + M+ K+ + +YVV+M K+V++++ V +D+YG +ARI+ +L++ + L+Q+ +GE+A++P +DAR RLY L D++V +QE+PKRAD NP TF+ W++ Q+ + E + ++ +R RRKF +K +R E AL I D +LS +R Sbjct: 349 TDETSLVWRFGMTQMLRDLRHKTCIRFASENI--NAVAGVIVEAMLQHSSPREREKDEATSAPVSARDLFNME---------SVKKALPSESNNPWRLLLNYITVMCRDKSGMIMKVAQEAFDPTKARASDGGQYVVHMQKIVEFLQQATVHAYIQDKYGVASARIVR------------------LLMEKRQLEQKSIGELALLPSNDARHRLYELYTDKLVKLQEIPKRADHNPAFTFFCWSVDVLQMQTRITERVQDSLCRLRRRRKFEAEENKELIARSEQLVEALDI-DKFDKLSRSLDR 623
BLAST of mRNA_E-siliculosus-1a_F_contig1089.606.1 vs. uniprot
Match: A0A3R7FY14_9STRA (DNA-directed RNA polymerase III subunit RPC3 n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7FY14_9STRA) HSP 1 Score: 145 bits (367), Expect = 3.290e-35 Identity = 87/285 (30.53%), Postives = 152/285 (53.33%), Query Frame = 1 Query: 82 GAGATVLD--SVLWKLGFDKFHRDFRNLALLGLVQDRFPKSKLAYLVVKVMLDSSAPTERKVDEPVSASISARDLFDKLCEAWQTSNLTKNKAVPDWRRFVSWMSALCTDLTSMVSKIPGS--DTQNPR------YVVNMAKMVQYIRSNLVKCTARDRYGKETARIMEARRKINYPRCSAAARLYCILLQNKYLDQQQVGEMAMIPPSDARERLYRLLKDRMVSVQEVPKRADRNPNTTFYLWTIKHDQVAQVVLESLYKAMLNMRLRRKFVYSNDKACCSRLE 906 G+ A +D S++W+ G + RD R+ A + + + +A ++V ML SAP ER+ DEP+SA +SARDLF N +++ WR ++++ +C D + MV K+ D R YVV+M K+V++++ +D++G +A+AR+ +L++ + L+Q+ +GE+A++P +DAR RLY L +++V +QE+PKRAD NP TF+ W++ + + E + ++ +R RRKF +K +R E Sbjct: 353 GSSAVDMDERSLVWRFGVTQLLRDLRHKACIKFATENI--NAVAGVIVAAMLQHSAPREREKDEPISAPVSARDLFGME----SVKNALPSESNNPWRLLLNYIMVMCRDKSGMVMKVAQEAFDPSQARSGDGGQYVVHMQKIVEFLQQVTTHAYIQDKFG------------------AASARIVRLLMEKRQLEQKTIGELALLPSNDARHRLYELYGEKLVKMQEIPKRADHNPAFTFFCWSVDVPHMQTRITERVQDSLCRLRRRRKFEAEENKELIARSE 613
BLAST of mRNA_E-siliculosus-1a_F_contig1089.606.1 vs. uniprot
Match: G4Z0C0_PHYSP (DNA-directed RNA polymerase III subunit RPC3 (Fragment) n=5 Tax=Phytophthora TaxID=4783 RepID=G4Z0C0_PHYSP) HSP 1 Score: 145 bits (365), Expect = 4.200e-35 Identity = 90/290 (31.03%), Postives = 154/290 (53.10%), Query Frame = 1 Query: 82 GAGA-TVLDSVLWKLGFDKFHRDFRNLALLGLVQDRFPKSKLAYLVVKVMLDSSAPTERKVDEPVSASISARDLFDKLCEAWQTSNLTKNKAVPD-----WRRFVSWMSALCTDLTSMVSKIPGSDTQNP---------RYVVNMAKMVQYIRSNLVKCTARDRYGKETARIMEARRKINYPRCSAAARLYCILLQNKYLDQQQVGEMAMIPPSDARERLYRLLKDRMVSVQEVPKRADRNPNTTFYLWTIKHDQVAQVVLESLYKAMLNMRLRRKFVYSNDKACCSRLE 906 G+GA T S++W+ G + RD R+ A + + + +A ++V ML S+P ER+ DEP S +SARDLFD + KA+P WR ++++ +C D + MV K+ + +P +YVV+M K+V++++ +D+YG +ARI+ +L++ + L+Q+ +GE+A++P +DAR RLY L D+++ +QE+PKRAD NP TF+ W++ Q+ + E + ++ +R RRKF +K +R E Sbjct: 303 GSGAHTDERSLVWRFGVTQLLRDLRHKACIRFATENI--NAVAGVIVAAMLQHSSPREREKDEPTSFPVSARDLFDME---------SVKKALPPEANNPWRLLLNYIMVMCRDKSGMVMKV-AQEAFDPTQTRAGDGGQYVVHMQKIVEFLQQATTHAYIQDKYGVASARIVR------------------LLMEKRQLEQKTIGELALLPSNDARHRLYELYTDKLLKMQEIPKRADHNPAFTFFCWSVDVPQMQARITERVQDSLCRLRRRRKFEAEENKELIARSE 562
BLAST of mRNA_E-siliculosus-1a_F_contig1089.606.1 vs. uniprot
Match: A0A5D6XL36_9STRA (DNA-directed RNA polymerase III subunit RPC3 n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XL36_9STRA) HSP 1 Score: 137 bits (345), Expect = 3.390e-32 Identity = 88/284 (30.99%), Postives = 147/284 (51.76%), Query Frame = 1 Query: 76 GIGAGATVLDSVL-WKLGFDKFHRDFRNLALLGLVQDRFPKSKLAYLVVKVMLDSSAPTERKVDEPVSASISARDLFDKLCEAWQTSNLTKNKAVPDWRRFVSWMSALCTDLTSMVSKIPGS--DTQNPR------YVVNMAKMVQYIRSNLVKCTARDRYGKETARIMEARRKINYPRCSAAARLYCILLQNKYLDQQQVGEMAMIPPSDARERLYRLLKDRMVSVQEVPKRADRNPNTTFYLWTIKHDQVAQVVLESLYKAMLNMRLRRKFVYSNDKACCSR 900 G+ AG + + L W+ G D+ RD R+ A + + + +A ++V ML S+P ER+ DE S ++AR+LF S L K+ WR +++++ +C D + MV K+ D R YVV+M K+V ++R +D++G +ARI+ +L++ + L+QQ +GE+A++P +DAR RLY L +R+V +QEVPKRAD NP T Y W++ ++ + V E + ++ +R RRK +K +R Sbjct: 363 GMAAGGALAEQALVWRFGADQLMRDLRHAACVRFATENI--NTVAGVIVAAMLQHSSPHEREKDEATSYPVTARELFAVPAVK---SALPKDSK-DTWRLLLNYITVMCRDKSGMVMKVAPETFDATQARAGDGGQYVVHMQKIVAFLRQATTHAYVQDKFGVPSARIVR------------------LLVEKRQLEQQTIGELALLPSNDARRRLYELFAERLVKLQEVPKRADHNPAFTLYCWSVDVPRMERSVRERVEASLCKLRARRKLEAEQNKELIAR 622
BLAST of mRNA_E-siliculosus-1a_F_contig1089.606.1 vs. uniprot
Match: A0A662YGR9_9STRA (DNA-directed RNA polymerase III subunit RPC3 (Fragment) n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662YGR9_9STRA) HSP 1 Score: 135 bits (341), Expect = 9.970e-32 Identity = 83/280 (29.64%), Postives = 146/280 (52.14%), Query Frame = 1 Query: 106 SVLWKLGFDKFHRDFRNLALLGLVQDRFPKSKLAYLVVKVMLDSSAPTERKVDEPVSASISARDLFDKLCEAWQTSNLTKNKAVPD----WRRFVSWMSALCTDLTSMVSKIPGSDTQNP---------RYVVNMAKMVQYIRSNLVKCTARDRYGKETARIMEARRKINYPRCSAAARLYCILLQNKYLDQQQVGEMAMIPPSDARERLYRLLKDRMVSVQEVPKRADRNPNTTFYLWTIKHDQVAQVVLESLYKAMLNMRLRRKFVYSNDKACCSRLE 906 S++W+ G + RD R+ A + + + +A ++V ML S+P ER+ DEP S +SAR+LF K+ P+ WR ++++ +C D + MV K+ +T +P +YVV+M K+V+++R +D++G +ARI+ +L++ + L+Q+ +GE+A++P +D R RLY L +++V +QEVPKRAD NP TF+ W++ ++ V E + ++ +R RRK +K +R E Sbjct: 364 SLVWRFGAAQLLRDLRHKACIKFASENI--NAVAGVIVAAMLQHSSPREREKDEPTSFPVSARELF--------AMESVKSALPPESNNPWRLLLNYIMVMCRDKSGMVMKV-SQETFDPNQTRAGDGGQYVVHMQKIVEFLRQATTHAYVQDKFGVASARIVR------------------LLVEKRQLEQKAIGELALLPSNDVRRRLYELFAEKLVKMQEVPKRADHNPALTFFCWSVDVPRMQARVAERIQDSVCRLRRRRKAEADENKELIARSE 614
BLAST of mRNA_E-siliculosus-1a_F_contig1089.606.1 vs. uniprot
Match: A0A484E8N6_BRELC (DNA-directed RNA polymerase III subunit RPC3 n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484E8N6_BRELC) HSP 1 Score: 135 bits (339), Expect = 2.020e-31 Identity = 82/280 (29.29%), Postives = 149/280 (53.21%), Query Frame = 1 Query: 106 SVLWKLGFDKFHRDFRNLALLGLVQDRFPKSKLAYLVVKVMLDSSAPTERKVDEPVSASISARDLFDKLCEAWQTSNLTKNKAVPD-----WRRFVSWMSALCTDLTSMVSKIPGS--DTQNPR------YVVNMAKMVQYIRSNLVKCTARDRYGKETARIMEARRKINYPRCSAAARLYCILLQNKYLDQQQVGEMAMIPPSDARERLYRLLKDRMVSVQEVPKRADRNPNTTFYLWTIKHDQVAQVVLESLYKAMLNMRLRRKFVYSNDKACCSRLE 906 S++W+ G + R+ R+ A + + + +A ++V ML+ S+P ER+ +E SA +SARDL++ T KA+P WR +++++ +C D + M+ K+ D+ R YVV+M K+V++++ +DR+G +ARI+ +L++ + L+Q+ +GE+A++P ++AR RLY L D++V +QE+PKRAD NP TF+ W++ Q+ + E + ++ +R RR F +K +R E Sbjct: 358 SLVWRFGMTQMLRELRHKACIRFATENV--NAVAGVIVTAMLEHSSPRERESNESTSAPVSARDLYNME---------TVKKALPSEANNPWRLLLNYITVMCRDKSGMMMKVAQETFDSTQARAGDGGQYVVHMQKIVEFLQQATTHAYIQDRFGVASARIVR------------------LLIEKRQLEQKTIGELALLPSNEARHRLYELYTDKLVKMQEIPKRADHNPAFTFFCWSVDIPQMHVRITERVQGSLCRLRRRRTFEAEENKELIARSE 608
BLAST of mRNA_E-siliculosus-1a_F_contig1089.606.1 vs. uniprot
Match: W7U6Z3_9STRA (DNA-directed RNA polymerase III subunit RPC3 n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7U6Z3_9STRA) HSP 1 Score: 128 bits (321), Expect = 6.140e-29 Identity = 87/264 (32.95%), Postives = 136/264 (51.52%), Query Frame = 1 Query: 79 IGAGATVLDSVLWKLGFDKFHRDFRNLALLGLVQDRFPKSKLAYLVVKVMLDSSAPTERK--VDEPVSASISARDLFDKLCEAWQTSNLTKNKAVPDWRRFVSWMSALCTDLTSMVSKIPGSDTQNPRYVVNMAKMVQYIRSNLVKCTARDRYGKETARIMEARRKINYPRCSAAARLYCILLQNKYLDQQQVGEMAMIPPSDARERLYRLLKDRMVSVQEVPKRADRNPNTTFYLWTIKHDQVAQVVLESLYKAMLNMRLRRK 864 +GAG D VLW++G ++FHRD R++ L V+ + + A +V+ +L S P ER V P S +S +L ++ L N V ++ L D +V + T Y V + ++++ +R + R+RY ++ R AR+ +LL KYLD QQV E+AM+ + RERLYR+ D +++VQE+P+RAD +PN TFYLWT QV + + + +YK LN+RLRR+ Sbjct: 409 VGAG----DEVLWRVGVEQFHRDLRHVTCLRFVRQKV--NTTAESLVRAILQHSLPLERDGTVAPPRSQPLSLGELSSRV-------QLPPNVTVK------MYLEVLQNDPVQIVDR---EGTATDVYCVCLGRIIESLRQRTLHSIIRERYTTDSKACDGDRN----------ARICRVLLDKKYLDPQQVSELAMMSLRETRERLYRMYADLLLTVQEIPRRADHHPNQTFYLWTFNMQQVVEELTQRMYKGALNLRLRRQ 640 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1089.606.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig1089.606.1 >prot_E-siliculosus-1a_F_contig1089.606.1 ID=prot_E-siliculosus-1a_F_contig1089.606.1|Name=mRNA_E-siliculosus-1a_F_contig1089.606.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=354bp MDGVFEEEGEGGHAEEEDVLGGRGGGIGAGATVLDSVLWKLGFDKFHRDFback to top mRNA from alignment at E-siliculosus-1a_F_contig1089:18830..24257- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig1089.606.1 ID=mRNA_E-siliculosus-1a_F_contig1089.606.1|Name=mRNA_E-siliculosus-1a_F_contig1089.606.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=5428bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1089:18830..24257- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1089:18830..24257- >mRNA_E-siliculosus-1a_F_contig1089.606.1 ID=mRNA_E-siliculosus-1a_F_contig1089.606.1|Name=mRNA_E-siliculosus-1a_F_contig1089.606.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=2124bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1089:18830..24257- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |