mRNA_E-siliculosus-1a_F_contig1089.604.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig1089.604.1
Unique NamemRNA_E-siliculosus-1a_F_contig1089.604.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1089.604.1 vs. uniprot
Match: D7FMS8_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMS8_ECTSI)

HSP 1 Score: 550 bits (1417), Expect = 1.180e-194
Identity = 336/373 (90.08%), Postives = 347/373 (93.03%), Query Frame = 1
Query:    1 MGSNTGDFSDESSSRASSASRRGTTRELALCSTAXXXXXXESDDDYLSRVTHLRLQNKGISSLDNPDVFDACHSLKVLYLYDNCVESLKGLEKLQQIEQLFADNNLLTTIQGTLSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHVARQRLQRGQCFTIEQASIDGIKDSLVLLDASGNGMGGTEIEGILHLYRLETLNLAENGHLRQELSYVVDLVSSLEALRDLDLRGNVVSRMAKYFERAVTRCGDFLATLDGKPVHAQHRSMLQRLDRHKRSEARKSAAQTLARSSTHAPMAEPGTQREDSARLHDGDFSKGHSHSQHEDAAKKSSMLDLNSSLRTTRAGVRFASSAGTSSGTSQDDRDKPLISWASSR 1119
            M S TG+FSDESSSRASSASRRGTTRELALCSTA XXXXXESDDDYLSRVTHLRLQNKGISSLDNPDVFDACHSLKVLYLYDNCVESLKGLEKLQ+IEQLFADN           XXXXXXXXXXXXXXXXXXXXXXXXXXXXX VARQRLQRGQCFTI+QASIDGIKDSLVLLDASGNGMGGTEIEGILHLYRLETLNLAEN    QE++ VVDLVSSLEALRDLDLRGN+VSRMAKYFERAVTRCGD LATLDGKPVHAQHRSMLQRLDRHKRSEARKSAA+TLARS+THAP+AEPG QREDSARLHDGDFSKGHSHS+H+D AKKSSMLDLN SLRTTRAGVRFASS GTSS TSQDDRDKPLISWASSR
Sbjct:    1 MDSITGEFSDESSSRASSASRRGTTRELALCSTATXXXXXESDDDYLSRVTHLRLQNKGISSLDNPDVFDACHSLKVLYLYDNCVESLKGLEKLQRIEQLFADNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVARQRLQRGQCFTIDQASIDGIKDSLVLLDASGNGMGGTEIEGILHLYRLETLNLAENDI--QEMAQVVDLVSSLEALRDLDLRGNIVSRMAKYFERAVTRCGDLLATLDGKPVHAQHRSMLQRLDRHKRSEARKSAAKTLARSNTHAPIAEPGAQREDSARLHDGDFSKGHSHSEHQDPAKKSSMLDLNPSLRTTRAGVRFASSVGTSSSTSQDDRDKPLISWASSR 371          
BLAST of mRNA_E-siliculosus-1a_F_contig1089.604.1 vs. uniprot
Match: A0A2D4BJ87_PYTIN (Uncharacterized protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BJ87_PYTIN)

HSP 1 Score: 89.0 bits (219), Expect = 4.700e-16
Identity = 110/258 (42.64%), Postives = 143/258 (55.43%), Query Frame = 1
Query:  136 YLSRVTHLRLQNKGISSLDNPDVFDACHSLKVLYLYDNCVESLKGLEKLQQIEQLFADNNLLTTIQGTLSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHVARQRLQRGQCFTIEQASIDGIKDSLVLLDASGNGMGGTEIEGI--LHLYR-LETLNLAENGHLRQELSYVVDLVSSLEALRDLDLRGNVVSRMAKYFERAVTRCGDFLATLDGKPVHAQHRSMLQRLDRHK---RSEARKSAAQTLARSST-HAPMA 888
            YL R+THL L       +     F  C +LKVLYLYDN +E+++GL++++Q+  L   NN          XXXXXXXXXXXXXXXXXXXXXXXXXXXXX    QRL     F+ E +SI  +  SL +L+     +    +E +  L L R L+ L+L++N  L   L  V  LV SL  L DLDL  N V+   KY E+ +T     LA LD + + A  R M+Q    HK   R E  +++ Q  A SST  AP A
Sbjct:   44 YLKRITHLTLNGNDKKVVKRMQNFHYCPNLKVLYLYDNEIEAIEGLDRVRQLTHLHLQNNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQRLSPSSTFSFEPSSIQALCRSLRVLN-----LANCRVESVRALELLRGLQVLDLSKN--LFASLEDVFSLVGSLSVLVDLDLTLNPVTTQPKYREKVITFSSPRLALLDKRDIDANQRRMMQSHMAHKFRKRQEQEQASNQEPALSSTLQAPSA 294          
BLAST of mRNA_E-siliculosus-1a_F_contig1089.604.1 vs. uniprot
Match: UPI001E1CF726 (uncharacterized protein LOC123514193 n=1 Tax=Portunus trituberculatus TaxID=210409 RepID=UPI001E1CF726)

HSP 1 Score: 80.1 bits (196), Expect = 9.580e-13
Identity = 94/258 (36.43%), Postives = 131/258 (50.78%), Query Frame = 1
Query:  130 DDYLSRVTHLRLQNKGISSLDNPDVFDACHSLKVLYLYDNCVESLKGLEKLQQIEQLFADNNLLTTIQGTLSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHVARQRLQRGQCFTIEQASIDGIKDSLVLLDASGNGMGGTEIEGILHLYRLETLNLAENGHLRQELSYVVDLVSSLEALRDLDLRGNVVSRMAKYFERAVTRCGDFLATLDGKPVHAQHRSMLQRLDRHKRSEARKSAAQTLARSSTHAPMAEPGTQ 903
            D+YL+RVTHL LQNKGI+ L++     AC    V YL  N +  L  L  L+ + +L               XXXXXXXXXXXXXXXXXXX          HV  QRL  G    ++  ++  ++D+L +LD  GN +  TE+  +  L RL+ L  A+N      LS++  ++  L  L+ L L GN V+   +Y    +      L TLD KPV A+ R  L + DR+ R+  R+++ Q  A  ST        TQ
Sbjct:   91 DNYLARVTHLHLQNKGITHLED---VAACGGALVAYLQHNHLTRLTNLRYLRHLRELXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLPRGLTEL--HVQDQRLPPGDALILDPHALAVVQDTLRVLDVRGNRL--TEMGAVGLLGRLQVLRAADND--LSSLSHLGTVLGRLAHLKHLHLIGNPVTAHRRYRPAVILAASPTLETLDDKPVTARSRDFLVQADRY-RAARRETSQQPPAAPSTSGSKVPAPTQ 338          
BLAST of mRNA_E-siliculosus-1a_F_contig1089.604.1 vs. uniprot
Match: A0A8K1CMN9_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CMN9_PYTOL)

HSP 1 Score: 79.0 bits (193), Expect = 1.240e-12
Identity = 101/272 (37.13%), Postives = 145/272 (53.31%), Query Frame = 1
Query:   31 ESSSRASSASRRGTTRELALCSTAXXXXXXESDDDYLSRVTHLRLQNKGISSLDNPDVFDACHSLKVLYLYDNCVESLKGLEKLQQIEQLFADNNLLTTIQGTLSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHVARQRLQRGQCFTIEQASIDGIKDSLVLLDASGNGMGGTEIEGILHLYRLETLNLAENGHLRQELSYVVDLVSSLEALRDLDLRGNVVSRMAKYFERAVTRCGDFLATLDGKPVHAQHRSMLQRLDRHKRSEARKSA 846
            + S+R  ++  R  T E+ + ++       E  + YL RVTHL L       +        C +LKVLYLYDN ++ L+GL+ + Q+                  XXXXXXXXXXXXXXXXXXXXXXXXXXXXX      L     F+ E+ +I  +  SL +L+ S   +  T+   +L L  L+ L+L++N  L +EL  V  L+  L +L +LDLR N V+ + KY E+A+T     LA LD K +    R M+Q    HK  + +++A
Sbjct:    5 DGSARGHASRVREITTEVLVHASKLSVGKTEHLEHYLKRVTHLTLNGSEKKVIKRIQHLQRCPNLKVLYLYDNEIQVLEGLDGVSQLTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLSPSTVFSFEEETIRALSRSLRVLNLSNCHITATQ--SLLGLRALQQLDLSKN--LIEELEDVFALLGGLYSLTELDLRSNPVTNIPKYREKAITFSSPRLALLDKKDIDMNQRRMMQSHLAHKHKKRQEAA 272          
BLAST of mRNA_E-siliculosus-1a_F_contig1089.604.1 vs. uniprot
Match: A0A7S2D0Q8_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2D0Q8_9STRA)

HSP 1 Score: 70.5 bits (171), Expect = 7.140e-10
Identity = 79/239 (33.05%), Postives = 112/239 (46.86%), Query Frame = 1
Query:   97 TAXXXXXXESDDDYLSRVTHLRLQNKGISSLDNPDVFD--ACHSLKVLYLYDNCVESLKGLEKLQQIEQLFADNNLLTTIQGTLSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHVARQRLQR-GQCFTIEQASIDGIKDSLVLLDASGNGM-GGTEIEGILHLYRLETLNLAENGHLRQELSYVVDLVSSLEALRDLDLRGNVVSRMAKYFERAVTRCGDFLATLDGKPVHAQHRSML 801
            TA      E DD+   RVTHL+L NK I     P +    A  +LKVLYL +NC+E + GL+ L      +  +N ++ I+          XXXXXXXXXXXXXXXXX       +A QR +  G+   +        + +L +L+ SGN +   TE+ G   L +L        G     +    ++VS  + L +LD  G  + R   Y    +      L+ LDGKP+   HR  L
Sbjct:    1 TAQKKRSAEKDDELFLRVTHLQLMNKRIG----PSISGLLAVENLKVLYLQENCIERISGLDHLTXXXXXYLQHNNISVIENV--PPSLSKXXXXXXXXXXXXXXXXXYKLKELSLASQRREHLGERLLLMPECFKSFEHALSVLNLSGNALVDTTEMSGFKALKKLHM------GRNDISIGQAKNMVSQFKTLEELDFSGCDMCRERTYLRSIIEVSSKLLSKLDGKPIQPFHRKQL 227          
BLAST of mRNA_E-siliculosus-1a_F_contig1089.604.1 vs. uniprot
Match: A0A225VT80_9STRA (Uncharacterized protein n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225VT80_9STRA)

HSP 1 Score: 70.5 bits (171), Expect = 8.780e-10
Identity = 108/293 (36.86%), Postives = 143/293 (48.81%), Query Frame = 1
Query:   73 TRELALCSTAXXXXXXESDDDYLSRVTHLRLQNKGISSLDNPDV---------FDACHSLKVLYLYDNCVESLKGLEKLQQIEQLFADNNLLTTIQGTLSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHVARQRLQRGQCFTIEQASIDGIKDSLVLLDASGNGMGGTEIEGILHLYRLETLNLAENGHLRQELSYVVDLVSSLEALRDLDLRGNVVSRMAKYFERAVTRCGDFLATLDGKPVHAQHRSMLQRLDRHKRSEARKSAAQTLARSSTHAPMAEPGTQREDSARL 924
            T E+ L +T       E    Y  RVTHL L      +L   D             C +LKVLYLYDN VE++                           XXXXXXXXXXXXXXXXXXXXXXXXXXXXX  A Q +     F+ E+ S+  + DSL +LD S   M  T+   +  L  LE L L++N  L  +L  +  LV  + +L +LDLRGN V+  AKY E+ +T     LA LD K V    R M+Q    HK     +S+++  + SS+    +   ++  +S RL
Sbjct:   18 TVEVLLNATKLSVGRHEQLSHYFKRVTHLALNGDASKTLKGSDKKGVIRKIKNLHHCPNLKVLYLYDNEVETIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXANQNIPVDLHFSFEEDSMRTLADSLRVLDLSNCCMVSTK--SVTLLRSLEHLYLSKN--LITDLEEIFALVGGITSLVELDLRGNPVTATAKYREQTITFSSARLALLDKKGVDPNQRRMMQTHLAHKYRNRLESSSRRQSPSSSEGKRSNQSSEPTESTRL 306          
BLAST of mRNA_E-siliculosus-1a_F_contig1089.604.1 vs. uniprot
Match: A0A8J8TBB7_HALGN (Uncharacterized protein n=1 Tax=Halteria grandinella TaxID=5974 RepID=A0A8J8TBB7_HALGN)

HSP 1 Score: 70.9 bits (172), Expect = 1.080e-9
Identity = 90/224 (40.18%), Postives = 127/224 (56.70%), Query Frame = 1
Query:  139 LSRVTHLRLQNKGISSLDNPDVFDACHSLKVLYLYDNCVESLKGLEKLQQIEQLFADNNLLTTIQGTLSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHVARQRLQRGQCFTIEQASIDGIKDSLVLLDASGNGMGGTEIEGILHLYRLETLNLAENGHLRQELSYVVDLVSSLEALRDLDLRGNVVSRMAKYFERAVTRCGDFLATLDGKPVHAQHRSMLQRL 810
            L ++THL L NK +  +   D+   C +L+VLYL+DN ++ + GL  L+ I QL               XXXXXXXXXXXXXXXXXXXXXXXXXXXXX  ++Q  Q    F+ ++ S+  I  SL  LD S   +  +E   + +L R+E L L +N  +  E   V  ++ ++ ALR LDL  N V+++ KY ++ +   G  L  +D K V  Q RS L +L
Sbjct:  167 LQKLTHLHLNNKRLQRIGE-DIQKLCGNLRVLYLFDNYIDKIDGLNTLKNIVQLSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSQQDTQSD--FSFDEYSLAAIAGSLKYLDLSQARV--SEPMPLYYLERVEVLILKKNRIVDFE-DQVCPMLQTMNALRQLDLTDNPVTQIPKYRDQVIILTGQRLQEIDNKKVTQQERSYLMQL 384          
BLAST of mRNA_E-siliculosus-1a_F_contig1089.604.1 vs. uniprot
Match: A0A813WIL9_9BILA (Hypothetical protein n=1 Tax=Didymodactylos carnosus TaxID=1234261 RepID=A0A813WIL9_9BILA)

HSP 1 Score: 69.3 bits (168), Expect = 2.340e-9
Identity = 90/228 (39.47%), Postives = 119/228 (52.19%), Query Frame = 1
Query:  121 ESDDDYLSRVTHLRLQNKGISSLDNPDVFDACHSLKVLYLYDNCVESLKGLEKLQQIEQLFADNNLLTTIQGTLSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHVARQRLQRGQCFTIEQASIDGIKDSLVLLDASGNGMGGT-EIEGILHLYRLETLNLAENGHLRQELSYVVDLVSSLEALRDLDLRGNVVSRMAKYFERAVTRCGDFLATLDGKPVHAQHRSML 801
            ES   YLSR+THL  Q++GI S+D   +  AC  L V+YLYDN +  ++ L   +                    XXXXXXXXXXXXXXXXXXXXXXXXXXXXX V  Q L  G+    E  +I  +   L +L+ SGN +    E+  + HL  L T +     +LR+    +V L+S    ++ LD   N +   A+Y ER +      L  LDGKP+ A  R  L
Sbjct:   43 ESTAHYLSRITHLPFQSRGIDSVD---IIPACRHLTVIYLYDNALSKIENLNFAEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVENQHLPEGEKLVFEPRTILALAKVLQILNVSGNNLDSLIELSVLEHLEEL-TASXXXXXNLRE----LVHLLSIWPTIKRLDTNRNPLCTKARYRERLIV-VPTTLEVLDGKPIPANSRQFL 261          
BLAST of mRNA_E-siliculosus-1a_F_contig1089.604.1 vs. uniprot
Match: UPI001C7155A9 (protein phosphatase 1 regulatory subunit 42-like n=1 Tax=Penaeus japonicus TaxID=27405 RepID=UPI001C7155A9)

HSP 1 Score: 67.4 bits (163), Expect = 1.170e-8
Identity = 79/229 (34.50%), Postives = 119/229 (51.97%), Query Frame = 1
Query:  139 LSRVTHLRLQNKGISSLDNPDVFDACHSLKVLYLYDNCVESLKGLEKLQQIEQLFADNNLLTTIQGTLSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHVARQRLQRGQCFTIEQASIDGIKDSLVLLDASGNGMGGTEIEGILHLYRLETLNLAENGHLRQELSYVVDLVSSLEALRDLDLRGNVVSRMAKYFERAVTRCGDFLATLDGKPVHAQHRSMLQRLDRHKR 825
            LSRVTHL L+ +GI+ +++  V   C + +V +L  N +  L  L  L+ +++L               XXXXXXXXXXXXXXXXXXX          H+  QRL  G    ++  ++  ++D+L+LLD SGN M  TE+  +  L  L+ L  A N  LR  LS++  ++  L  L++    GN V+   +Y    +      L  LDG+ V +  R  L + +RH+R
Sbjct:   98 LSRVTHLHLERRGITHIEDVGV---CPAARVAFLQHNHLTRLANLRPLRLLQELXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLPHGLQEL--HIQEQRLPPGDALVLDPHALAAVQDTLLLLDVSGNRM--TELGPVGLLNNLKVLR-AGNNDLRT-LSHLAAVLGRLRHLQEAYFTGNPVTAHRRYRPALILASQPKLENLDGRAVTSYSRDFLVQTNRHRR 317          
BLAST of mRNA_E-siliculosus-1a_F_contig1089.604.1 vs. uniprot
Match: A0A818QMV6_9BILA (Hypothetical protein n=5 Tax=Adineta steineri TaxID=433720 RepID=A0A818QMV6_9BILA)

HSP 1 Score: 65.5 bits (158), Expect = 4.070e-8
Identity = 85/227 (37.44%), Postives = 118/227 (51.98%), Query Frame = 1
Query:  121 ESDDDYLSRVTHLRLQNKGISSLDNPDVFDACHSLKVLYLYDNCVESLKGLEKLQQIEQLFADNNLLTTIQGTLSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHVARQRLQRGQCFTIEQASIDGIKDSLVLLDASGNGMGGTEIEGILHLYRLETLNLAENGHLRQELSYVVDLVSSLEALRDLDLRGNVVSRMAKYFERAVTRCGDFLATLDGKPVHAQHRSML 801
            ES + YLSR+THL  QN+GI S++       C  L V+YLYDN +  ++ L   +                    XXXXXXXXXXXXXXXXXXXXXXXXXXXXX +  QRL +G+    E  ++  +   L +L+ SGN +    +  +  L +L+ L+ + N    ++L  +V L+S    LR LD   N +    +Y ER +      L  LDGK +    R  L
Sbjct:   23 ESVEHYLSRLTHLPFQNRGIESIEP---IPPCRQLTVIYLYDNILTKIENLNFAEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIENQRLPQGEKLVFEPRTLQCLSHGLEILNVSGNNLDS--LAELSCLEKLQELSASNNS--LEDLRELVQLLSIWPRLRRLDTNRNPLCAKGRYRERLIV-VSTTLEMLDGKQITDNSRQFL 241          
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1089.604.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FMS8_ECTSI1.180e-19490.08Hypothetical leucine rich repeat protein n=1 Tax=E... [more]
A0A2D4BJ87_PYTIN4.700e-1642.64Uncharacterized protein n=1 Tax=Pythium insidiosum... [more]
UPI001E1CF7269.580e-1336.43uncharacterized protein LOC123514193 n=1 Tax=Portu... [more]
A0A8K1CMN9_PYTOL1.240e-1237.13Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A7S2D0Q8_9STRA7.140e-1033.05Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A225VT80_9STRA8.780e-1036.86Uncharacterized protein n=1 Tax=Phytophthora megak... [more]
A0A8J8TBB7_HALGN1.080e-940.18Uncharacterized protein n=1 Tax=Halteria grandinel... [more]
A0A813WIL9_9BILA2.340e-939.47Hypothetical protein n=1 Tax=Didymodactylos carnos... [more]
UPI001C7155A91.170e-834.50protein phosphatase 1 regulatory subunit 42-like n... [more]
A0A818QMV6_9BILA4.070e-837.44Hypothetical protein n=5 Tax=Adineta steineri TaxI... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1089contigE-siliculosus-1a_F_contig1089:2762..6664 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size1122
Model size1122
Exons9
Ec32 orthologEc-21_000290.1
Ec32 ortholog descriptionHypothetical leucine rich repeat protein
Hectar predicted targeting categoryother localisation
BRITEko00000,ko01009,ko04812
Best eggNOG OGNA|NA|NA
Best tax levelEukaryota
EggNOG OGs2CZ6V@1,2S8SX@2759
KEGG koko:K17579
Seed eggNOG ortholog2880.D7FMS8
Seed ortholog evalue3e-156
Seed ortholog score558.1
Taxonomic scopeEukaryota
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927588.5473588-CDS-E-siliculosus-1a_F_contig1089:2761..29871622927588.5473588-CDS-E-siliculosus-1a_F_contig1089:2761..2987Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1089 2762..2987 -
1696318599.7026145-CDS-E-siliculosus-1a_F_contig1089:2761..29871696318599.7026145-CDS-E-siliculosus-1a_F_contig1089:2761..2987Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1089 2762..2987 -
1622927588.5597212-CDS-E-siliculosus-1a_F_contig1089:3236..33951622927588.5597212-CDS-E-siliculosus-1a_F_contig1089:3236..3395Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1089 3237..3395 -
1696318599.7113652-CDS-E-siliculosus-1a_F_contig1089:3236..33951696318599.7113652-CDS-E-siliculosus-1a_F_contig1089:3236..3395Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1089 3237..3395 -
1622927588.5738878-CDS-E-siliculosus-1a_F_contig1089:3623..37241622927588.5738878-CDS-E-siliculosus-1a_F_contig1089:3623..3724Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1089 3624..3724 -
1696318599.718666-CDS-E-siliculosus-1a_F_contig1089:3623..37241696318599.718666-CDS-E-siliculosus-1a_F_contig1089:3623..3724Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1089 3624..3724 -
1622927588.589266-CDS-E-siliculosus-1a_F_contig1089:3829..38551622927588.589266-CDS-E-siliculosus-1a_F_contig1089:3829..3855Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1089 3830..3855 -
1696318599.726288-CDS-E-siliculosus-1a_F_contig1089:3829..38551696318599.726288-CDS-E-siliculosus-1a_F_contig1089:3829..3855Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1089 3830..3855 -
1622927588.6080964-CDS-E-siliculosus-1a_F_contig1089:4141..42471622927588.6080964-CDS-E-siliculosus-1a_F_contig1089:4141..4247Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1089 4142..4247 -
1696318599.7334833-CDS-E-siliculosus-1a_F_contig1089:4141..42471696318599.7334833-CDS-E-siliculosus-1a_F_contig1089:4141..4247Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1089 4142..4247 -
1622927588.6228452-CDS-E-siliculosus-1a_F_contig1089:4769..49081622927588.6228452-CDS-E-siliculosus-1a_F_contig1089:4769..4908Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1089 4770..4908 -
1696318599.7410343-CDS-E-siliculosus-1a_F_contig1089:4769..49081696318599.7410343-CDS-E-siliculosus-1a_F_contig1089:4769..4908Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1089 4770..4908 -
1622927588.6366343-CDS-E-siliculosus-1a_F_contig1089:5214..53511622927588.6366343-CDS-E-siliculosus-1a_F_contig1089:5214..5351Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1089 5215..5351 -
1696318599.748769-CDS-E-siliculosus-1a_F_contig1089:5214..53511696318599.748769-CDS-E-siliculosus-1a_F_contig1089:5214..5351Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1089 5215..5351 -
1622927588.651152-CDS-E-siliculosus-1a_F_contig1089:5760..58751622927588.651152-CDS-E-siliculosus-1a_F_contig1089:5760..5875Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1089 5761..5875 -
1696318599.756519-CDS-E-siliculosus-1a_F_contig1089:5760..58751696318599.756519-CDS-E-siliculosus-1a_F_contig1089:5760..5875Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1089 5761..5875 -
1622927588.6699364-CDS-E-siliculosus-1a_F_contig1089:6551..66641622927588.6699364-CDS-E-siliculosus-1a_F_contig1089:6551..6664Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1089 6552..6664 -
1696318599.7640142-CDS-E-siliculosus-1a_F_contig1089:6551..66641696318599.7640142-CDS-E-siliculosus-1a_F_contig1089:6551..6664Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1089 6552..6664 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1089.604.1prot_E-siliculosus-1a_F_contig1089.604.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig1089 2762..6664 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig1089.604.1

>prot_E-siliculosus-1a_F_contig1089.604.1 ID=prot_E-siliculosus-1a_F_contig1089.604.1|Name=mRNA_E-siliculosus-1a_F_contig1089.604.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=374bp
MGSNTGDFSDESSSRASSASRRGTTRELALCSTATTRRRNESDDDYLSRV
THLRLQNKGISSLDNPDVFDACHSLKVLYLYDNCVESLKGLEKLQQIEQL
FADNNLLTTIQGTLSCRRLRKLHLSGNSISKLGGLETASCLEELHVARQR
LQRGQCFTIEQASIDGIKDSLVLLDASGNGMGGTEIEGILHLYRLETLNL
AENGHLRQELSYVVDLVSSLEALRDLDLRGNVVSRMAKYFERAVTRCGDF
LATLDGKPVHAQHRSMLQRLDRHKRSEARKSAAQTLARSSTHAPMAEPGT
QREDSARLHDGDFSKGHSHSQHEDAAKKSSMLDLNSSLRTTRAGVRFASS
AGTSSGTSQDDRDKPLISWASSR*
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mRNA from alignment at E-siliculosus-1a_F_contig1089:2762..6664-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig1089.604.1 ID=mRNA_E-siliculosus-1a_F_contig1089.604.1|Name=mRNA_E-siliculosus-1a_F_contig1089.604.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=3903bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1089:2762..6664- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGGGCTCCAACACGGGAGACTTTTCAGACGAAAGCTCGTCACGAGCTTC CTCTGCTAGTAGGAGAGGGACTACGCGCGAGCTGGCTCTATGTAGTACGG CCACGACCAGGCGGTGAGGATCATTCTTCTCGTCCTTTCATTGTTGTTCC ATCGGGCGAGCCGTTAGGAACCATCCATGTGTATCCTACATATCCACGTA CGTACGTTGTTGCGCCACGGGCGTGGCCGTTGAGAGCAGACTCTGGAGGT GTGTCTAGTACGTACGGCTGTACGGAATGTGGGACCCGTAGTGTTAGTTG CGGGTCTGCTGTTTGCGTGGGAGAGAGAAAAGAGAGGAACACAAACAGCA GCAAAAGCAGCAGCAATGCGTCGGCCATCAGTTAATTGCGCCGCATTCGA GGTCGCGTGTGTCCGATGGATGTAGGGGCTGGCAGGGGACATGCATGGCC CCAAAATCGACTTGGTTCGGGGTTGTGGGATGGCCATACGTATCGGGGAT GCCCTTGCGATGTTGCTTTTCCTTACTCAAGCGGTACATCGTCATCGCTG ACGCCGCGAAGCTGAAACAAAACCTCGACACCGTATACGCATCACGCACT CATCATGTGCGAACATGTGCATGATCGCATCCTACCATCCTACATACCCA TGGTTGCACGCTGATGAACTACTGTATACACCGCTGATGCTGCTGTAGCA CGCCGCACTTCGTTTTAGTTGGTGATGCCCCTCATGTTTGTTGTACTCGT GTCGCGCTTAAATGGACGCCAATTCTTTGGCATTGGCAGGAGAAACGAGT CGGACGACGACTATCTCTCTCGCGTGACGCACCTTCGCCTCCAAAACAAG GGCATCTCCAGCCTCGACAACCCGGATGTCTTTGACGCGTGTCATTCTCT CAAGGTATTGCCGCCAGAGCTTGTGAGGGTACCGAGAGGGGATACGCGTG CTTGCCGCCTGTATCACGAAAACAACAGATGGATCCAATGCATGTATGTA TGTGCAGCAACACTGCATATAATATACTACTGTAGGTTCATCTCTGCGAC AAATATGAGTCAGCGTGTCTAGACTATGTTGTTGCTGGTGTGTTGTTGTT GTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTATCTTCAA ATTAAAAACCGTTCCGGTCTTCGCTCAGCACCTTCTAATGTCCGTACTGG TCCAACTGACGCGGACGCCTTCCGTGGTCACAAGCCTATGTACGACGTGT ATATTCTACATACATAGACGTCGCGTACAATCTAATGTACCTGGTATTTT TTATTCACGGCAGGTCCTGTACCTGTACGACAACTGCGTGGAATCTCTCA AGGGCCTGGAAAAACTCCAGCAAATCGAGCAACTCTTCGCGGACAACAAC TTGCTCACCACTATTCAGGGCACCCTGTCGTGCAGACGACTACGAAAATT GTGAGCGTTTTCATGTACACCAGTAGCTCAAAGATTAAGATTCGAACGCC TCGCCCGCCTGAAGTTCGGTTGCAGCACCGCACGAAGGAAATTGCCGCAC GAAGGAAATGATTCTGCCTGCCTCGAGTAAGAGCCAGCCGTCGGGAGTGT TTCTCGCCTCGACTCGATTTCTCCAGATAAGATATGATGGGTCTGGCACG TACAAAGCCCCCCGCTACAATTTAAGTCCCCAGGGGAACTGCAAGACGAA AAAAGTCCCCGAAAACGCACTCAATGGGTGGCCTGCCTTGAACCGGATCA TGCCAGGCACTTGAGCGGGAATTCTATTTCGAAGCTGGGCGGGCTGGAGA CCGCTAGTTGCTTGGAAGAGCTGCACGTGGCAAGACAGCGACTCCAAAGA GGGCAGTGCTTCACCATCGAGCAAGCATCCATAGACGGGATCAAGGTGAT CTATCTACCTTGTCTATTTCCATGTCGTTTGTGCTTGGTGCGGAGAGTGT AGTGCACTACTGTGGACCATGTAGATACAAACCGTCGCCTTAGGCGTCGA GGACAAACTACACCGTAGACGACATAGATAGGCGCCACGACAAGAAGTCC TTACTAAAGGCCAGCAGCGCAGGGAGAACCGTGGAGAAAATATACTCCAG TGTTTGCAGGTCATACATACCTCCTTTTCGAACCCGTATGGGACGTCAAA CATGTCCCGAAAGCCGAGATGGAAACAAAACAAGCTTTATCGCGACTGAA CGAACGTCGACGGTTGAATGGTTCCATCGCCGGGGCTCAATCGATTCAGC AGATACACGGATTAAAGATTCAGGACAACTGAAGACCATAGTCCCAACCA TGAATGAATGGGCGTCATCTCCGTTTTCAACGGACGGTCCCTATCTACTG CTTACCTCCTTACTGACCCTGATGTATTCCCCGCCTCCGACCAAACGCTC GTGGTCCTTGGTTCCAGGACTCGTTAGTTTTGCTTGATGCTTCGGGCAAC GGCATGGGTGGCACAGAAATCGAAGGCATCCTCCATCTCTACCGGCTCGA GACCCTCAATTTGGCGGAGAACGGTATCCAGGAAATGGCACAGGCACGCC CAAGCGAAAAAGGACGGAATACAAATGGTCAATTGCACTACTACTGTAGG CATAACAGTTTAGGGAAGTTTTTTTTCGCTATTAATAGATGTCCGCTCTG CCGTTTCGGGCCTTGTGAGGATTCAAACCGCGGGCCATCCATGCACGATG TTCCTGCCTATTCATTGAGCCACTACTGTGGCTGCCGGGAATGTGCGATC GACCATTTCAACGGCATGTGAATAGTCCTCTTAACGCGTACTTCGAAGTA CCTTGCTAGGACACCTCCGGCAGGAATTATCGTATGTATTCAATGGTGCG ATAGATGAACGTCGTTCTTAGGCCTTCGTGTTCGAACTTCACATTCATTC GTACCATAAAGTTGTGGCATTCCCACATGGCACACAATAGGTGGTTGATC TGGTGAGCAGCCTGGAGGCGCTGAGGGACCTAGATCTCAGAGGCAACGTG GTCAGTCGCATGGCCAAGTACTTCGAGAGAGCCGTCACGAGGTGAGGATT GACGGACGGATCATTTCTCATGTACGGCTGCATTGTCGCCAAGTCAAGTG CAACGTGTACTGTTGTTCCTCAGCCATGCGTACTCCTGCGAGTGGAACAA CCGTTGCCTGAGGCAACAGTCTTCAAGAAGAACAACGATACTGATCAATT GATGCCATAACCCTTGCAACAACAACCAACCGGGATCTCTGCCGACGAAT GCAATGCACGCTCAACAAGGTGTGGAGATTTCTTGGCGACCCTAGACGGC AAACCGGTGCATGCGCAACACCGCTCGATGCTGCAACGGCTAGACCGCCA CAAGCGTTCGGAGGCTAGGAAATCCGCCGCTCAAACCCTCGCCCGCTCCA GCACCCATGCACCCATGGCAGAACCCGGGTGGGTGGAAGTGTGTAGTAGA AGTGTGGTGTTAGTATGTAGGCGCAACGCAGTACTCGTTCTCCGACTATT GATGCCGGGTAGATTTACACACCTTGTCTATGGCGGACATGACAGGCTCG TGCGACCCCACGCTTTGTTTTCACATCAAGGACACATTCATTCACACCCC TCGCCTGCATGTGGCACGATAGCGCATTGGGTATACCTCACTCTCATGGT TATCATTCTCTCTCTGCCTGCTAACAGGACCCAACGCGAAGACTCAGCGA GGCTCCACGACGGAGATTTCTCCAAGGGCCACAGCCATAGCCAGCATGAA GACGCGGCGAAAAAATCTTCGATGCTGGACCTAAACTCTTCCTTGCGCAC AACGCGTGCGGGGGTGCGCTTTGCCAGCAGCGCAGGCACTTCCAGTGGTA CAAGTCAAGATGATCGCGACAAGCCGTTAATTTCTTGGGCGAGCTCGCGG TAG
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1089:2762..6664-

>mRNA_E-siliculosus-1a_F_contig1089.604.1 ID=mRNA_E-siliculosus-1a_F_contig1089.604.1|Name=mRNA_E-siliculosus-1a_F_contig1089.604.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=2244bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1089:2762..6664- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGGGCTCCAACACGGGAGACTTTTCAGACGAAAGCTCGTCACGAGCTTC
CTCTGCTAGTAGGAGAGGGACTACGCGCGAGCTGGCTCTATGTAGTACGG
CCACGACCAGGCGATGGGCTCCAACACGGGAGACTTTTCAGACGAAAGCT
CGTCACGAGCTTCCTCTGCTAGTAGGAGAGGGACTACGCGCGAGCTGGCT
CTATGTAGTACGGCCACGACCAGGCGGAGAAACGAGTCGGACGACGACTA
TCTCTCTCGCGTGACGCACCTTCGCCTCCAAAACAAGGGCATCTCCAGCC
TCGACAACCCGGATGTCTTTGACGCGTGTCATTCTCTCAAGGAGAAACGA
GTCGGACGACGACTATCTCTCTCGCGTGACGCACCTTCGCCTCCAAAACA
AGGGCATCTCCAGCCTCGACAACCCGGATGTCTTTGACGCGTGTCATTCT
CTCAAGGTCCTGTACCTGTACGACAACTGCGTGGAATCTCTCAAGGGCCT
GGAAAAACTCCAGCAAATCGAGCAACTCTTCGCGGACAACAACTTGCTCA
CCACTATTCAGGGCACCCTGTCGTGCAGACGACTACGAAAATTGTCCTGT
ACCTGTACGACAACTGCGTGGAATCTCTCAAGGGCCTGGAAAAACTCCAG
CAAATCGAGCAACTCTTCGCGGACAACAACTTGCTCACCACTATTCAGGG
CACCCTGTCGTGCAGACGACTACGAAAATTGCACTTGAGCGGGAATTCTA
TTTCGAAGCTGGGCGGGCTGGAGACCGCTAGTTGCTTGGAAGAGCTGCAC
GTGGCAAGACAGCGACTCCAAAGAGGGCAGTGCTTCACCATCGAGCAAGC
ATCCATAGACGGGATCAAGGCACTTGAGCGGGAATTCTATTTCGAAGCTG
GGCGGGCTGGAGACCGCTAGTTGCTTGGAAGAGCTGCACGTGGCAAGACA
GCGACTCCAAAGAGGGCAGTGCTTCACCATCGAGCAAGCATCCATAGACG
GGATCAAGGACTCGTTAGTTTTGCTTGATGCTTCGGGCAACGGCATGGGT
GGCACAGAAATCGAAGGCATCCTCCATCTCTACCGGCTCGAGACCCTCAA
TTTGGCGGAGAACGGACTCGTTAGTTTTGCTTGATGCTTCGGGCAACGGC
ATGGGTGGCACAGAAATCGAAGGCATCCTCCATCTCTACCGGCTCGAGAC
CCTCAATTTGGCGGAGAACGGACACCTCCGGCAGGAATTATCGTATGACA
CCTCCGGCAGGAATTATCGTATGTGGTTGATCTGGTGAGCAGCCTGGAGG
CGCTGAGGGACCTAGATCTCAGAGGCAACGTGGTCAGTCGCATGGCCAAG
TACTTCGAGAGAGCCGTCACGAGGTGGTTGATCTGGTGAGCAGCCTGGAG
GCGCTGAGGGACCTAGATCTCAGAGGCAACGTGGTCAGTCGCATGGCCAA
GTACTTCGAGAGAGCCGTCACGAGGTGTGGAGATTTCTTGGCGACCCTAG
ACGGCAAACCGGTGCATGCGCAACACCGCTCGATGCTGCAACGGCTAGAC
CGCCACAAGCGTTCGGAGGCTAGGAAATCCGCCGCTCAAACCCTCGCCCG
CTCCAGCACCCATGCACCCATGGCAGAACCCGGGTGTGGAGATTTCTTGG
CGACCCTAGACGGCAAACCGGTGCATGCGCAACACCGCTCGATGCTGCAA
CGGCTAGACCGCCACAAGCGTTCGGAGGCTAGGAAATCCGCCGCTCAAAC
CCTCGCCCGCTCCAGCACCCATGCACCCATGGCAGAACCCGGGACCCAAC
GCGAAGACTCAGCGAGGCTCCACGACGGAGATTTCTCCAAGGGCCACAGC
CATAGCCAGCATGAAGACGCGGCGAAAAAATCTTCGATGCTGGACCTAAA
CTCTTCCTTGCGCACAACGCGTGCGGGGGTGCGCTTTGCCAGCAGCGCAG
GCACTTCCAGTGGTACAAGTCAAGATGATCGCGACAAGCCGTTAATTTCT
TGGGCGAGCTCGCGGTAGGACCCAACGCGAAGACTCAGCGAGGCTCCACG
ACGGAGATTTCTCCAAGGGCCACAGCCATAGCCAGCATGAAGACGCGGCG
AAAAAATCTTCGATGCTGGACCTAAACTCTTCCTTGCGCACAACGCGTGC
GGGGGTGCGCTTTGCCAGCAGCGCAGGCACTTCCAGTGGTACAAGTCAAG
ATGATCGCGACAAGCCGTTAATTTCTTGGGCGAGCTCGCGGTAG
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