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Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1087.596.1 vs. uniprot
Match: D7FLC8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLC8_ECTSI) HSP 1 Score: 355 bits (912), Expect = 9.610e-122 Identity = 191/208 (91.83%), Postives = 199/208 (95.67%), Query Frame = 1
Query: 1 MDVAAKAKKSQALIDSIEELIVLEADVSLATECCQQQREPEVMVPLTEVAFMHASVAGESVMMGLGQDYFVERTPEQARAVLRRRMADLSEQARVLREGTLLAPKEPAKSVQGQRRQKKGDSDSKKTWANKGFLSSKGSGGPTKGRLPPKRQTVPPEEPKEAADGGSSRTPTEIKFDDSEGQEVRISTPSADFQATTGPT--RLCSYC 618
MDVAAKAKKSQALIDSIEELI LEADVSLAT+CCQQQREPEVMVPLT+VAFMH SVAGES+MMGLGQDYFVERTPEQAR VL+RRMADLSEQARVLREGTLLAPKEPAKSVQGQRR+KKGDSD+KKTWA KGFLSSKGSGGPTKG LPPKRQTVPPEEPKEAADGGS RTPTEIKFDDSEGQEVRIS+PS DFQ+TTGPT RLCSYC
Sbjct: 1 MDVAAKAKKSQALIDSIEELIALEADVSLATQCCQQQREPEVMVPLTDVAFMHGSVAGESIMMGLGQDYFVERTPEQAREVLQRRMADLSEQARVLREGTLLAPKEPAKSVQGQRRRKKGDSDTKKTWA-KGFLSSKGSGGPTKGHLPPKRQTVPPEEPKEAADGGSLRTPTEIKFDDSEGQEVRISSPSEDFQSTTGPTINRLCSYC 207
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Start | 1 |
| Stop | 1 |
| Cds size | 693 |
| Model size | 742 |
| Exons | 5 |
| Ec32 ortholog | Ec-12_007680.1 |
| Ec32 ortholog description | Prefoldin alpha-like |
| Hectar predicted targeting category | other localisation |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622927587.2826712-UTR-E-siliculosus-1a_F_contig1087:37389..37438 | 1622927587.2826712-UTR-E-siliculosus-1a_F_contig1087:37389..37438 | Ectocarpus siliculosus Ec863f_EcPH12_90f female | UTR | E-siliculosus-1a_F_contig1087 37390..37438 + |
| 1696318599.2284026-UTR-E-siliculosus-1a_F_contig1087:37389..37438 | 1696318599.2284026-UTR-E-siliculosus-1a_F_contig1087:37389..37438 | Ectocarpus siliculosus Ec863f_EcPH12_90f female | UTR | E-siliculosus-1a_F_contig1087 37390..37438 + |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig1087.596.1 >prot_E-siliculosus-1a_F_contig1087.596.1 ID=prot_E-siliculosus-1a_F_contig1087.596.1|Name=mRNA_E-siliculosus-1a_F_contig1087.596.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=231bp
MDVAAKAKKSQALIDSIEELIVLEADVSLATECCQQQREPEVMVPLTEVA
FMHASVAGESVMMGLGQDYFVERTPEQARAVLRRRMADLSEQARVLREGT
LLAPKEPAKSVQGQRRQKKGDSDSKKTWANKGFLSSKGSGGPTKGRLPPK
RQTVPPEEPKEAADGGSSRTPTEIKFDDSEGQEVRISTPSADFQATTGPT
RLCSYCRLQVALHVESRRGYLPALWLEPLM* back to topmRNA from alignment at E-siliculosus-1a_F_contig1087:34898..37438+ Legend: polypeptideCDSUTR Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_E-siliculosus-1a_F_contig1087.596.1 ID=mRNA_E-siliculosus-1a_F_contig1087.596.1|Name=mRNA_E-siliculosus-1a_F_contig1087.596.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=2541bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1087:34898..37438+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGGATGTTGCGGCAAAAGCGAAGAAATCGCAAGCCTTGATCGATTCGAT
CGAGGAGCTGATTGTGCTCGAGGCTGATGTTTCACTGGCGACGGAGTGCT
GCCAACAGCAGAGAGAACCTGAGGTGATTTGACTGCCCCTCATAGGATCA
ACTCTCGATGGGTGTGTGTCCGTGTGTGTAGGCCTCCTTCACTGGGAATG
TTTGTCGAAGGGTCTGTCGCTTTTTTTAGCTCGGGGAGCTTGCTTTGTTG
GGCTGTCGTCGTACATGACTCCTGAGACATCCTGTTGTTCCAACCCAAAC
TGTCTCTCCAACATCTCCATGTAGAGAACACCATGACAGATGCTCCTTAC
ATCACCCGCTTCTTCTTTCCGACGAAATGACGAAGGTGCATCATTCCGAC
ACCTATGCATAGTGTTGGGGAAGGCTTTGTCAGCAGATGCACGTGCCGTT
GAAGTACATGTACGCAACTGGAAACCCTACCAGGAATCCCTTGGTATTTA
TTCAATGTTGAAAATGCGGTAACGTTTTGTTTCCGAGAGCTCAAAGATAT
CGGCGTATCAGGGTGAAATGTGAACTACTGCTGTAGGGCGGGAGATCAGT
CTCTGTCTCTCTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT
CTCTCTCTCTCTCTCTCTTTCTCTCGTATCGTGTTTATTCAGGGCGCCGA
CGAGTGCGGGAACCGCAAGACAAGTGGGACAATCACATGGCGACCGCTGA
TTTCAACGACAGTCGATCTCTCCAAAAGACTCATGTCTTCCGTTGCTCTG
TCTATCTCCAACATAAAGGTCATGGTGCCTTTAACCGAGGTGGCTTTCAT
GCACGCAAGTGTTGCTGGCGAGAGCGTCATGATGGGCTTGGGTCAAGACT
ACTTCGTCGAGAGGACTCCTGAACAAGCACGGGCAGTTCTACGAAGAAGG
ATGGCAGGTGTGAGCCCTAAATACGATGTAGTCTGAGCGTGTAGCTCGAC
TCGAGTGGTCAGCGTGGGTACTGTCGTACAGGCAAGATGTTTGCATCCAT
CCTTCCCTGACAGAGCGCCCTGTCGCCATTCATGTTGAATCCCCCTAAAC
GATGATGGGGGTGTGTGGGTTACACAGCCAATGAACACACGTGCGACGTT
ATTCCGAACTGTAGTTTCATTTTTAACGTCTACTTGTACACATGCAGCGG
ATCGAAGCCCGTTGCCATCTTCTCGGTCGCGGTCATGCGTACCAATCGCA
GAAACCCGGGCACCGCCGTGTGTGCAGGTCAAGCGGGATAGATTGCTCCA
TCCATGCAGGACATGATTCCATCCGGGCTTGGTCAAGGTCTCCCCGATCG
GCCCCATTCGTAGGATCTGTGGTAGAGGCAGTATTTTACACCCGAAGACC
ACGAACGCAGCGCTGTCGTTCGCCAGATGGTGAGCGCGATGGGTTGTTAA
GATTTCTTGCTGCTGCTGTGTTGTTGATCAGATCTTTCGGAGCAGGCGCG
AGTTCTACGGGAGGGCACGCTTCTGGCGCCCAAAGAACCAGCGAAATCGG
TACAGGGACAAAGGCGCCAAAAGAAGGGCGATTCCGACTCCAAAAAGACG
TGGGCCAACAAGGGCTTCTTGTCGTCCAAAGGAAGTGGCGGACCCACGAA
GGGCCGTCTACCTCCAAAGGTACGTGCTGGAACACCGTGCGTGCTGAAAC
AATATGTGCGCTCACGTCTAGTCCAGCAAATGCATCGTGCAATTTCAGTT
TCAAATAGGCCACACTGCGCCGCTGCAGACAGAACGTGTCGATTTGGAGA
AAGGAGGTCGAGAACCAGCGTGTTCTCGACGAAGGTGCAGAGCCAATTGA
GTAATCGCGCACAAGGTGATGGCGAGAACATGGCGTTGTAAGGTTTAAGT
GTGGGTTGCCTTTCTGAACGGTGGTACAACATGCCCCTCGGGCAAGTTGC
TTATTTCTCTCCCCAAAACGCCATATATGCTTTTGCTTTTGTGCCGCTCG
TGAGACAGCGTCAGACGGTTCCCCCTGAAGAACCCAAGGAAGCTGCTGAC
GGGGGCTCTTCGCGCACCCCAACCGAGATTAAGTTCGACGACTCGGAAGG
CCAAGAGGTGATGTGCGAATGTAGATGGATCGACGAAGTATGCGGCCGTA
TCGATCAGCGCGCCAATAGTGTACGGCCACGCGTGCCCGTACTTTGATAT
AAGTAGGCGTCCTGAGCCGAAAGGGTTTGTGTATTGGTCGAGCCCCATGA
ACTGCTTTCGGTGTTGCTGCCCGTCTTGGCTGTATCGGTCCTGCTTTTGT
CCGTTTATTTTTGTTCTGGATCATTGAAATGCCGGCCTGAGTACACAGGT
TAGGATCAGTACGCCAAGTGCAGATTTCCAGGCCACCACAGGGCCGACTA
GGTTGTGCAGCTATTGTCGTCTCCAGGTAGCGTTACATGTAGAGAGCCGG
CGGGGATACCTACCCGCCCTTTGGCTCGAACCGCTGATGTAGTCGTTACG
GCTTCGTCCATGGAGATGGTTTGCCGTCGATCAACTTCACT back to topCoding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1087:34898..37438+ >mRNA_E-siliculosus-1a_F_contig1087.596.1 ID=mRNA_E-siliculosus-1a_F_contig1087.596.1|Name=mRNA_E-siliculosus-1a_F_contig1087.596.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1386bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1087:34898..37438+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGGATGTTGCGGCAAAAGCGAAGAAATCGCAAGCCTTGATCGATTCGAT
CGAGGAGCTGATTGTGCTCGAGGCTGATGTTTCACTGGCGACGGAGTGCT
GCCAACAGCAGAGAGAACCTGAGATGGATGTTGCGGCAAAAGCGAAGAAA
TCGCAAGCCTTGATCGATTCGATCGAGGAGCTGATTGTGCTCGAGGCTGA
TGTTTCACTGGCGACGGAGTGCTGCCAACAGCAGAGAGAACCTGAGGTCA
TGGTGCCTTTAACCGAGGTGGCTTTCATGCACGCAAGTGTTGCTGGCGAG
AGCGTCATGATGGGCTTGGGTCAAGACTACTTCGTCGAGAGGACTCCTGA
ACAAGCACGGGCAGTTCTACGAAGAAGGATGGCAGGTCATGGTGCCTTTA
ACCGAGGTGGCTTTCATGCACGCAAGTGTTGCTGGCGAGAGCGTCATGAT
GGGCTTGGGTCAAGACTACTTCGTCGAGAGGACTCCTGAACAAGCACGGG
CAGTTCTACGAAGAAGGATGGCAGATCTTTCGGAGCAGGCGCGAGTTCTA
CGGGAGGGCACGCTTCTGGCGCCCAAAGAACCAGCGAAATCGGTACAGGG
ACAAAGGCGCCAAAAGAAGGGCGATTCCGACTCCAAAAAGACGTGGGCCA
ACAAGGGCTTCTTGTCGTCCAAAGGAAGTGGCGGACCCACGAAGGGCCGT
CTACCTCCAAAGATCTTTCGGAGCAGGCGCGAGTTCTACGGGAGGGCACG
CTTCTGGCGCCCAAAGAACCAGCGAAATCGGTACAGGGACAAAGGCGCCA
AAAGAAGGGCGATTCCGACTCCAAAAAGACGTGGGCCAACAAGGGCTTCT
TGTCGTCCAAAGGAAGTGGCGGACCCACGAAGGGCCGTCTACCTCCAAAG
CGTCAGACGGTTCCCCCTGAAGAACCCAAGGAAGCTGCTGACGGGGGCTC
TTCGCGCACCCCAACCGAGATTAAGTTCGACGACTCGGAAGGCCAAGAGC
GTCAGACGGTTCCCCCTGAAGAACCCAAGGAAGCTGCTGACGGGGGCTCT
TCGCGCACCCCAACCGAGATTAAGTTCGACGACTCGGAAGGCCAAGAGGT
TAGGATCAGTACGCCAAGTGCAGATTTCCAGGCCACCACAGGGCCGACTA
GGTTGTGCAGCTATTGTCGTCTCCAGGTAGCGTTACATGTAGAGAGCCGG
CGGGGATACCTACCCGCCCTTTGGCTCGAACCGCTGATGTAGGTTAGGAT
CAGTACGCCAAGTGCAGATTTCCAGGCCACCACAGGGCCGACTAGGTTGT
GCAGCTATTGTCGTCTCCAGGTAGCGTTACATGTAGAGAGCCGGCGGGGA
TACCTACCCGCCCTTTGGCTCGAACCGCTGATGTAG back to top
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