mRNA_E-siliculosus-1a_F_contig1085.589.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig1085.589.1
Unique NamemRNA_E-siliculosus-1a_F_contig1085.589.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig1085.589.1 vs. uniprot
Match: A0A6H5KV56_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KV56_9PHAE)

HSP 1 Score: 54.3 bits (129), Expect = 7.730e-5
Identity = 94/111 (84.68%), Postives = 94/111 (84.68%), Query Frame = 1 
Query:   16 RAKVEGLAQAQVVSASPVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKGEARHDERQAHAGLPTGVKEGGDVG 348
            RAKVEGLAQ QVVSASPV             XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKGEARHDERQAH  LP GVKEGGDVG
Sbjct:  989 RAKVEGLAQGQVVSASPVTAEPLAQQASVPVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKGEARHDERQAHVALPIGVKEGGDVG 1099
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1085.589.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KV56_9PHAE7.730e-584.68Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1085contigE-siliculosus-1a_F_contig1085:14610..15858 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start0
Stop0
Cds size714
Model size716
Exons2
Hectar predicted targeting categoryother localisation
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927586.0089161-CDS-E-siliculosus-1a_F_contig1085:14609..147021622927586.0089161-CDS-E-siliculosus-1a_F_contig1085:14609..14702Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1085 14610..14702 +
1696318598.697587-CDS-E-siliculosus-1a_F_contig1085:14609..147021696318598.697587-CDS-E-siliculosus-1a_F_contig1085:14609..14702Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1085 14610..14702 +
1622927586.0226555-CDS-E-siliculosus-1a_F_contig1085:15236..158571622927586.0226555-CDS-E-siliculosus-1a_F_contig1085:15236..15857Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1085 15237..15857 +
1696318598.7050245-CDS-E-siliculosus-1a_F_contig1085:15236..158571696318598.7050245-CDS-E-siliculosus-1a_F_contig1085:15236..15857Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1085 15237..15857 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1085.589.1prot_E-siliculosus-1a_F_contig1085.589.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig1085 14610..15857 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig1085.589.1

>prot_E-siliculosus-1a_F_contig1085.589.1 ID=prot_E-siliculosus-1a_F_contig1085.589.1|Name=mRNA_E-siliculosus-1a_F_contig1085.589.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=238bp
QQQQQRAKVEGLAQAQVVSASPVTAEPLAQQASVPVCPSPTAGTSDAAID
NGGVSTGRVGSVSGGPKAGTSGKGGNGRSRASGSRSRGGRKGEARHDERQ
AHAGLPTGVKEGGDVGGGGSRGGLVATPPPAQQQQPQAQELTKKGGRGQQ
QRRQREQHQQHQQHQQHQQQQPQPPPKGRSSAKPQQPSSTTTATATTTIP
AKAKKKAPALVVETPVSGAWADEIPSPTPQRQRQQQQQ
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mRNA from alignment at E-siliculosus-1a_F_contig1085:14610..15858+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig1085.589.1 ID=mRNA_E-siliculosus-1a_F_contig1085.589.1|Name=mRNA_E-siliculosus-1a_F_contig1085.589.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=1249bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1085:14610..15858+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
CAGCAGCAACAACAGCGAGCGAAAGTAGAGGGCTTGGCTCAGGCTCAGGT
GGTGTCGGCGTCGCCCGTGACAGCAGAGCCGTTGGCACAGCAGGTGAGGC
ACTGTGGTACTACTGTAGCCGGTTAGGAAGAGTGATGGTTTCAATGGTTT
TTCAATCGACATCAAAGGTGTGAGAAACGCAGCACGCAGCAACGTGTCCT
TGACTGCCGTACTGTAGCTGTAGCTGTAGTCAACGTTCCGCCCATCACCT
CCTTGGCGGGTGGTTGTCATTGCGTGTTTGGTCTGGCACCTTTGTGTACC
GACACCGCAGTCTTCTGTGCGAATGAAGCTGTTCGCCGTACATGAGTGTC
AGTGGGGGTTTGGAATGGGCCGTTGCAGACAGTTTTCCGCCAACAAGAGG
TAGAGGTACAAAAGTGTTCTCTGCCGGTGGTGCATGAACAAACGTTTCCG
GGGTACCCCCCCGCCCCACATGTTGCAGAGTTCTCTTCTGACAACATATG
ATGGTACCCTCCAGCTACCCCCTGTATTCTAAGCAGTGCGCGGTCAATGG
CCAAGTTGCTCAAGAGAATAAGTTCTCGTCAACCGCCGTTGTTGTTGCGT
TTGGATGTGTAATCTGTGTCGCTTCAGGCCTCTGTCCCGGTTTGCCCTTC
CCCTACCGCGGGAACGAGCGATGCCGCCATCGACAACGGAGGGGTATCGA
CCGGGCGCGTGGGATCAGTGTCAGGGGGCCCGAAGGCTGGTACCAGCGGG
AAGGGGGGGAACGGACGGAGTCGCGCATCGGGCTCGCGTTCACGGGGAGG
ACGGAAGGGGGAGGCTAGGCACGACGAGAGGCAAGCACACGCGGGGCTGC
CGACAGGGGTCAAGGAAGGTGGTGACGTCGGCGGCGGTGGAAGTCGCGGT
GGTTTGGTAGCGACGCCCCCGCCGGCACAGCAGCAGCAGCCCCAGGCCCA
AGAGCTTACGAAGAAGGGGGGGAGGGGTCAGCAACAGCGGCGCCAACGGG
AGCAGCACCAGCAGCACCAGCAGCACCAGCAGCACCAGCAGCAGCAGCCG
CAGCCCCCGCCGAAAGGTAGATCGAGCGCCAAGCCTCAGCAGCCGTCGTC
GACGACAACAGCAACAGCAACAACAACAATCCCCGCGAAAGCAAAGAAGA
AAGCCCCTGCTCTTGTGGTCGAGACCCCGGTGTCTGGAGCCTGGGCGGAC
GAGATACCTTCCCCCACACCGCAAAGACAGCGACAGCAGCAGCAGCAGC
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1085:14610..15858+

>mRNA_E-siliculosus-1a_F_contig1085.589.1 ID=mRNA_E-siliculosus-1a_F_contig1085.589.1|Name=mRNA_E-siliculosus-1a_F_contig1085.589.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1428bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1085:14610..15858+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
CAGCAGCAACAACAGCGAGCGAAAGTAGAGGGCTTGGCTCAGGCTCAGGT
GGTGTCGGCGTCGCCCGTGACAGCAGAGCCGTTGGCACAGCAGCAGCAGC
AACAACAGCGAGCGAAAGTAGAGGGCTTGGCTCAGGCTCAGGTGGTGTCG
GCGTCGCCCGTGACAGCAGAGCCGTTGGCACAGCAGGCCTCTGTCCCGGT
TTGCCCTTCCCCTACCGCGGGAACGAGCGATGCCGCCATCGACAACGGAG
GGGTATCGACCGGGCGCGTGGGATCAGTGTCAGGGGGCCCGAAGGCTGGT
ACCAGCGGGAAGGGGGGGAACGGACGGAGTCGCGCATCGGGCTCGCGTTC
ACGGGGAGGACGGAAGGGGGAGGCTAGGCACGACGAGAGGCAAGCACACG
CGGGGCTGCCGACAGGGGTCAAGGAAGGTGGTGACGTCGGCGGCGGTGGA
AGTCGCGGTGGTTTGGTAGCGACGCCCCCGCCGGCACAGCAGCAGCAGCC
CCAGGCCCAAGAGCTTACGAAGAAGGGGGGGAGGGGTCAGCAACAGCGGC
GCCAACGGGAGCAGCACCAGCAGCACCAGCAGCACCAGCAGCACCAGCAG
CAGCAGCCGCAGCCCCCGCCGAAAGGTAGATCGAGCGCCAAGCCTCAGCA
GCCGTCGTCGACGACAACAGCAACAGCAACAACAACAATCCCCGCGAAAG
CAAAGAAGAAAGCCCCTGCTCTTGTGGTCGAGACCCCGGTGTCTGGAGCC
TGGGCGGACGAGATACCTTCCCCCACACCGCAAAGACAGCGACAGCAGCA
GCAGCAGGCCTCTGTCCCGGTTTGCCCTTCCCCTACCGCGGGAACGAGCG
ATGCCGCCATCGACAACGGAGGGGTATCGACCGGGCGCGTGGGATCAGTG
TCAGGGGGCCCGAAGGCTGGTACCAGCGGGAAGGGGGGGAACGGACGGAG
TCGCGCATCGGGCTCGCGTTCACGGGGAGGACGGAAGGGGGAGGCTAGGC
ACGACGAGAGGCAAGCACACGCGGGGCTGCCGACAGGGGTCAAGGAAGGT
GGTGACGTCGGCGGCGGTGGAAGTCGCGGTGGTTTGGTAGCGACGCCCCC
GCCGGCACAGCAGCAGCAGCCCCAGGCCCAAGAGCTTACGAAGAAGGGGG
GGAGGGGTCAGCAACAGCGGCGCCAACGGGAGCAGCACCAGCAGCACCAG
CAGCACCAGCAGCACCAGCAGCAGCAGCCGCAGCCCCCGCCGAAAGGTAG
ATCGAGCGCCAAGCCTCAGCAGCCGTCGTCGACGACAACAGCAACAGCAA
CAACAACAATCCCCGCGAAAGCAAAGAAGAAAGCCCCTGCTCTTGTGGTC
GAGACCCCGGTGTCTGGAGCCTGGGCGGACGAGATACCTTCCCCCACACC
GCAAAGACAGCGACAGCAGCAGCAGCAG
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