|
|
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1082.571.1 vs. uniprot
Match: D8LRX7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRX7_ECTSI) HSP 1 Score: 286 bits (732), Expect = 2.310e-97 Identity = 148/157 (94.27%), Postives = 153/157 (97.45%), Query Frame = 1
Query: 1 MNFSGFQSMGDVGGLLALEGSGNTERKPVELARALELQANAFSGRDVKSITVAALSRNTYTLPAANIIAAVLKELPNLIKIDFSDIIDAAQLNTGTAVFKAFCEGVYDKKVSLFDMGENTLTPESVEDCRPIIESDHMRDLLLVNSDLSGPSMIQLT 471
MNF+GFQSMGDVGGLLALEGSGNT+RKPVELARALELQANAFSGRD K ITVAALSRNTYTLPAANIIAAVLKELP+LIKIDFSDIIDAAQ NTGT VFKAFCEGVYDKK+SLFDMGENTLTPESVEDCRPIIESDHMRDLLLVNS+LSGPSMIQLT
Sbjct: 1 MNFNGFQSMGDVGGLLALEGSGNTKRKPVELARALELQANAFSGRDAKFITVAALSRNTYTLPAANIIAAVLKELPSLIKIDFSDIIDAAQNNTGTGVFKAFCEGVYDKKISLFDMGENTLTPESVEDCRPIIESDHMRDLLLVNSNLSGPSMIQLT 157
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Start | 1 |
| Stop | 0 |
| Cds size | 471 |
| Model size | 471 |
| Exons | 3 |
| Ec32 ortholog | Ec-08_002840.1 |
| Ec32 ortholog description | conserved unknown protein |
| Hectar predicted targeting category | other localisation |
| BRITE | br01610,ko00000,ko00001,ko00002,ko03011,ko03019 |
| Best eggNOG OG | NA|NA|NA |
| Best tax level | Eukaryota |
| COG Functional cat. | AT |
| EggNOG OGs | COG5238@1,KOG1909@2759 |
| EggNOG free text desc. | GTPase activator activity |
| KEGG Module | M00178,M00427 |
| KEGG Pathway | ko03010,ko03013,map03010,map03013 |
| KEGG ko | ko:K02909,ko:K14319 |
| Seed eggNOG ortholog | 2880.D8LRW6 |
| Seed ortholog evalue | 1.7e-12 |
| Seed ortholog score | 79.3 |
| Taxonomic scope | Eukaryota |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig1082.571.1 >prot_E-siliculosus-1a_F_contig1082.571.1 ID=prot_E-siliculosus-1a_F_contig1082.571.1|Name=mRNA_E-siliculosus-1a_F_contig1082.571.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=157bp
MNFSGFQSMGDVGGLLALEGSGNTERKPVELARALELQANAFSGRDVKSI
TVAALSRNTYTLPAANIIAAVLKELPNLIKIDFSDIIDAAQLNTGTAVFK
AFCEGVYDKKVSLFDMGENTLTPESVEDCRPIIESDHMRDLLLVNSDLSG
PSMIQLT back to topmRNA from alignment at E-siliculosus-1a_F_contig1082:5033..8376- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_E-siliculosus-1a_F_contig1082.571.1 ID=mRNA_E-siliculosus-1a_F_contig1082.571.1|Name=mRNA_E-siliculosus-1a_F_contig1082.571.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=3344bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1082:5033..8376- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGAACTTCAGCGGATTCCAAAGCATGGGCGACGTGGGTGGCCTGCTCGC
CCTGGAGGGCAGCGGCAACACCGAGCGCAAGCCGGTGGAGCTGGTGAGCG
GAACAACCAACCGGTGAAACGACCAGATACGGCCCTCCGAGCACAGATAG
ACTCCCAAGAGCGACGACACAGACATGAACCGTCGGGATTCGGGGGCTCT
CATGACTCCAGGCATACGCCATCCATGAGAGTTGGAAATAGCCTGCTTGA
TCTTGTATCTGACCCAGCTCAAATGAGGATCTACAGGAACGGTCCCGCTC
TTGCCGGATGCCATGTAGTATGTCTCGTGTGCGGATGGATGCAGCATGCA
TTTTGTCTCCCTCGTTTCAAATCCATTTCACAACAGTAGAGACAGCAGCT
ACCACATGCCTGAGTCTGAGATAGAGTTGTCTTGAATTATCAGCGTGGCC
TTGCTGGTCTCTCTCCGTGCGGCCAAAGCTTTAAACTTTCTTGCCTGGTG
AGCGCGTGCCCTACTATTTAATACTGTATTATTGTACATGGTTCACCCGC
ATATTGCTCCTCCTGTGTACAGACTGCACTGTCGGCCCTCAAGAAACACC
GATTCCTCAGAGCCTTATGCATGTGATACAATGTCATGTAGTCTCGAAGA
TGGAATAAACAAGTATTCTGTAGACTCATGTAAGCTAGCTATAATAGTCT
AAACAGACTAGCTGTGAGCCTGCAATATTTTCTCTGATCTCTCGACTTCC
TATTCCAATTTTCCCCTCGCGAGCCACTTCGTCTGGAGACATTGGGCCGC
AACTCCTTTACAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCGGC
AGCAGTACGTAGTAGGAATATAGTAATAGCCACGCCTTATTGTTTGATAG
TACATGCCTGTTTTTTTTCTCTCTCTCGTGAAGTTATAGCCACACTCACT
CTGTGTCGTTTCTTTTTTACTTCTTCTTTCTCGATGGAAAACACCCTTCC
TTCACGAGGAGCTCAAGCAAATAAACGCAGATGAGAGAGAGCACCGATAC
GAAGTAAAAAGAGAAATAAATGCGATGATGAGAGAGAGAGAGAGAGAGAG
AGAGAGATAAACAGAGAGAGAGGCAAAGAGGCATTTAGGCACAAACTCTG
TGAGATACCCCCGAGCAGCTAGAAACTAGTCTACATGTACTTGTGTTTGT
TTCCACACAAGTAAATATTATACATTCACACCCCCCATGGTTGCCAGACC
ATTCTCTTCAATAGCTAAAAAAACGACGATGATACCGATGTCGCTGTACA
GCGAGAGCTTACGTTGTGTGATGATGCAGAGTAGCTCTCACTGTCTCTCT
CCTCGCTCGTGAGTATGCGGCCCGACTCGGGTTGCTCGAGAAATCAACAG
GAAATTACAGAGCCAAGCACGAAGAGTGCGGGGATATTATGCGGAGCATG
CACACCCCCAATACATTCGGAACGCGCCATCACTCTACAAATTCTAATTT
ATTTGCGTTTTCCTGTGTGTTATTATTTGATATGGTAGTGGGGAATGGGG
AAGCCAATAGGGAGCTAAGGTTTTCTCGTGGGTATTCTCACGCATTTGTT
CGTGAAACAACTACGTACAGGCGGCTGGCGCATTCTGTAGCCTGTACGAT
ATCCAAGGGCAGGGCCAAAGGACAAGACATATAAACATAGCATCGTCGTA
AGCCCTGCTGTGGCTGTCAGTGGTGACAGTGATGGGTGTGCCGAGTATAT
CATCAGAGATACCCGTGGGCGTTGCTTTGATGGGCTGTGTGTTGAAACTT
AGAGGGGGGGCTCATGTTGTTCTCTATGCGTCTTTCAATCCCATGTGTAT
GTAGCATACCCACATCATGCCTGAGCACCACCACATACACCAGGGCGACG
CATCTTGCCCAATGTTGAAGCACCCCAACAGGCCGTCGGTAACTGGTGCC
CTAGGGTTGCGTGCTCGGCCAAACATCCCCACGGTCCAAAAATATGTTGG
TATAACGCGACCTGGAGTCGACTGGTGGGTCCCAGTGGCGCACCCGGGGT
GTTTTAGAACCTCCTTCTCTATGGCTCACTAGGAACCTGAGCGAAAGCAA
ACTACTCCGATACAGGATCAAACACCACATGAAGAAGGGTTGTTTCCCTC
CGGTGCGCGGCGGGGAAGCGGGATGTATGTTGTCGTTTTTCTGTCTGGGA
ACAAAAGGAAAAATCCTTGGCCACAAGCTAACACCACCGAACGAACTCGC
TCCGAACGTACTTTGCATGCAGGCGAGGGCTCTCGAGCTCCAAGCGAACG
CTTTCTCTGGCAGGGACGTCAAGTCCATCACGGTTGCGGCCCTCAGCCGC
AACACTTACACCCTGCCCGCCGCAAACATCATCGCTGCTGTGCTGAAGGA
ACTACCAAATTTGATTAAGGTACGGGTGGAGGGTTTCTGTACCACCTTCA
TGCCTTGTGGTTTAGAGGTGAAAAACAGCAATTCGATGGCGTGCGGTAGT
TGCCGTCGTTGCAGGGAGGGGTGGGGGGGATCACCTCCCGACGTACGTAC
CCGCAAGTTGCGTGCTTTTTGAAACTGCAAAAAAAACACCCCTGTGTGCG
AGTGTGTGGGTGGGGTGTTCGCCATGCACCTGGCAGGTTTCACCCACGGG
TCCTTCGTGTTTTTTCTCGTTTGTGTACACAGGTCCGGTTTCGTGCGTAC
GTGAGCTCCATAGCATGTTCACTCCGTAGCGTTGCGTTGACGTTTCTTTC
TTGTGGATAGAGTGCTCGACGTGGGTGGGGGCGGGGGCAGGAGCCCCGTG
ACTCACGGCACAATTTTGTCAGAGCTACCTCTGCGGCAGTTCTCTTTGTG
CGTACGCCGGTTGGTCGCGTTGCATGCATAATTTCACGAAACATCACACG
CTTCTCATGTGGCAAAAACGCACGCTGTCTGCAGCGTTCCAAGATTGAAG
CAGCCTTGATCTTCACCGCTGTTTCTAGGGAGAAAAGCTGTCGAACCCTC
TCCGCCCACCCTCCCGAAGCCTGCAGTTTGCGCCTCCGCAGAGAAAATGA
TCACACGAACTTCATCGTGTCTTCCGCGTGCTTCACTACTACTACTGTGC
TCAACGATTGCAGATCGATTTCAGCGACATCATCGACGCTGCGCAGCTCA
ACACGGGAACCGCGGTCTTCAAGGCGTTCTGCGAAGGCGTCTACGACAAG
AAAGTTTCGCTTTTCGACATGGGCGAAAACACCCTCACCCCGGAAAGCGT
GGAGGACTGCCGCCCGATCATCGAATCGGACCACATGCGCGATCTCCTGC
TGGTCAACAGCGACCTCTCGGGACCTTCCATGATCCAACTCACC back to topCoding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1082:5033..8376- >mRNA_E-siliculosus-1a_F_contig1082.571.1 ID=mRNA_E-siliculosus-1a_F_contig1082.571.1|Name=mRNA_E-siliculosus-1a_F_contig1082.571.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=942bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1082:5033..8376- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGAACTTCAGCGGATTCCAAAGCATGGGCGACGTGGGTGGCCTGCTCGC
CCTGGAGGGCAGCGGCAACACCGAGCGCAAGCCGGTGGAGCTGATGAACT
TCAGCGGATTCCAAAGCATGGGCGACGTGGGTGGCCTGCTCGCCCTGGAG
GGCAGCGGCAACACCGAGCGCAAGCCGGTGGAGCTGGCGAGGGCTCTCGA
GCTCCAAGCGAACGCTTTCTCTGGCAGGGACGTCAAGTCCATCACGGTTG
CGGCCCTCAGCCGCAACACTTACACCCTGCCCGCCGCAAACATCATCGCT
GCTGTGCTGAAGGAACTACCAAATTTGATTAAGGCGAGGGCTCTCGAGCT
CCAAGCGAACGCTTTCTCTGGCAGGGACGTCAAGTCCATCACGGTTGCGG
CCCTCAGCCGCAACACTTACACCCTGCCCGCCGCAAACATCATCGCTGCT
GTGCTGAAGGAACTACCAAATTTGATTAAGATCGATTTCAGCGACATCAT
CGACGCTGCGCAGCTCAACACGGGAACCGCGGTCTTCAAGGCGTTCTGCG
AAGGCGTCTACGACAAGAAAGTTTCGCTTTTCGACATGGGCGAAAACACC
CTCACCCCGGAAAGCGTGGAGGACTGCCGCCCGATCATCGAATCGGACCA
CATGCGCGATCTCCTGCTGGTCAACAGCGACCTCTCGGGACCTTCCATGA
TCCAACTCACCATCGATTTCAGCGACATCATCGACGCTGCGCAGCTCAAC
ACGGGAACCGCGGTCTTCAAGGCGTTCTGCGAAGGCGTCTACGACAAGAA
AGTTTCGCTTTTCGACATGGGCGAAAACACCCTCACCCCGGAAAGCGTGG
AGGACTGCCGCCCGATCATCGAATCGGACCACATGCGCGATCTCCTGCTG
GTCAACAGCGACCTCTCGGGACCTTCCATGATCCAACTCACC back to top
|