mRNA_E-siliculosus-1a_F_contig1081.567.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig1081.567.1
Unique NamemRNA_E-siliculosus-1a_F_contig1081.567.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig1081.567.1 vs. uniprot
Match: D8LLY1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLY1_ECTSI)

HSP 1 Score: 719 bits (1856), Expect = 2.420e-250
Identity = 435/525 (82.86%), Postives = 443/525 (84.38%), Query Frame = 1 
Query:    1 AGRLSLQVVADFLEHWELHQTLSVLKLETDMATEDLLSTEELGSIVANGAAVGNGETKTPEGKPSPVMLQLLAACRAAPRDKENGLPLGAAAAA----GDRSERLIGEHKGREXXXXXXXXXXXXXXXX-RRGTTWRGVGVEGDGVPPRVTLRKRRGDHGGTNGTSVSGMGNGSG-EDANEPASSVSSEPISSATVGEREGDRQSRERQNDGDAEESRFGGLLLRKQPTAADGKDRGEDNGGAQGRWEQHFDGRMDESSYDFSENVESVRGAGEGLMVATAASGVDGGXXXXXXXXXXXXXGG--VTTENTALVEQAGVYDRSCEGEEDDGPRRGEGNGFSRHAGANDNPYDGXXXXX--LRXXXXXSLAGFXXXSDNGGGVEKEPRSSVDGGVASGVDEWNEDCYEDDDFDXXXXXXXXXXXXXXXSAGGNSAADVAAKVAANAGDGDVEEEALLTGGDGTYQDDLFDPEGSRGRVSAEQEERIADLEWEARVGLSADSSVSASPMEEDGMDGPAYEIVDAQSI 1545
            AGRLSLQVVADFLEHWELHQTLSVLKLETDMATEDLLSTEELGSIVANGA VG GE KTPEGK SPVMLQLLAACRAAPRDKEN  PLGAAA A    GDRSERLIGEHKG E                 RR TTWRGVGVEGDGVPPRVTLRKRRGDHGGTNGTSV GMGNGSG EDANEPASSVSSEPISSAT G REGDRQSRER++DGDAEESRFGGLLLRKQPTAAD KD GEDNGG QGRWE HFDGRMDE SYDFSENVESVRG GE  +VA AASGVDG  XXX    XXXXX    VTTENTA+VEQAGVYDRS EGEEDDG RR EG+ FSRHAGAND+PY G       LR     SLAGF   SDNG GVEKEPRSSVDGGVASGVDEWNED YEDDD  XXXXXXXXXXXXXXX    NSAADVAAKVAANAGDG+VEEEALLTGGDGT+QD LFDPEGSRGRVSAEQEERIADLEWEARVGLSADSSVSASPMEEDGMDGPAYEIVDAQSI
Sbjct:    3 AGRLSLQVVADFLEHWELHQTLSVLKLETDMATEDLLSTEELGSIVANGAVVGKGEMKTPEGKTSPVMLQLLAACRAAPRDKENEFPLGAAATATATAGDRSERLIGEHKGWEGEEGRQEAEEEEGEDGGRRSTTWRGVGVEGDGVPPRVTLRKRRGDHGGTNGTSVCGMGNGSGGEDANEPASSVSSEPISSATAGVREGDRQSRERESDGDAEESRFGGLLLRKQPTAADDKDGGEDNGGGQGRWEHHFDGRMDEDSYDFSENVESVRGGGEDPIVAAAASGVDGDGXXXESISXXXXXXXXXVTTENTAIVEQAGVYDRSYEGEEDDGHRREEGDRFSRHAGANDSPYGGGGGGDGALRNGNGDSLAGFGGSSDNGVGVEKEPRSSVDGGVASGVDEWNEDYYEDDDXXXXXXXXXXXXXXXXXXXXXNSAADVAAKVAANAGDGEVEEEALLTGGDGTHQDGLFDPEGSRGRVSAEQEERIADLEWEARVGLSADSSVSASPMEEDGMDGPAYEIVDAQSI 527
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig1081.567.1 vs. uniprot
Match: A0A6H5JFJ8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFJ8_9PHAE)

HSP 1 Score: 690 bits (1781), Expect = 2.570e-238
Identity = 416/519 (80.15%), Postives = 434/519 (83.62%), Query Frame = 1 
Query:    4 GRLSLQVVADFLEHWELHQTLSVLKLETDMATEDLLSTEELGSIVANGAAVGNGETKTPEGKPSPVMLQLLAACRAAPRDKENGLPLGAAAAAGDRSERLIGEHKGREXXXXXXXXXXXXXXXXRRGTTWRGVGVEGDGVPPRVTLRKRRGDHGGTNGTSVSGMGNGSG-EDANEPASSVSSEPISSATVGEREGDRQSRERQNDGDAEESRFGGLLLRKQPTAADGKDRGEDNGGAQGRWEQHFDGRMDESSYDFSENVESVRGAGEGLMVATAASGVDGGXXXXXXXXXXXXXGG----VTTENTALVEQAGVYDRSCEGEEDDGPRRGEGNGFSRHAGANDNPYDGXXXXXLRXXXXXSLAGFXXXSDNGGGVEKEPRSSVDGGVASGVDEWNEDCYEDDDFDXXXXXXXXXXXXXXXSAGGNSAADVAAKVAANAGDGDVEEEALLTGGDGTYQDDLFDPEGSRGRVSAEQEERIADLEWEARVGLSADSSVSASPMEEDGMDGPAYEIVDAQSI 1545
            GRL+LQVVADFLEHWELHQTLSVLKLETDMATED LSTEELGSIVANGAAVG GETKTP+GKPSPVMLQLLAACRAAPRD+ENGLPLGAAAA  DRSERLIGE KGR+                RRGTTWRGVGVEGDGVPPRVTLRKRRGDHGGT+GTSVSGMGNGSG EDANEPA SV SEP+SSAT GEREGDRQSRER+NDGDAEESRFGGLLLR+QPTAAD   RGED  G Q RWE HFDGRMDESSYDFSENVESV+GAGE  MVA         XXXXXXXXXXXXX      VT+EN ALVEQAGVYDRSCEG+EDDGPRR EG+ FS+HAGAN++    XXXX LR     SLAGF   SDNGGGVEKEPRSSVDGGVASGVDEWNED YEDDDFD XXXXX X         G  SAADVAAKVAANAGDG+VE+EALL  G GT+QD  FDPEGSRGRVSAEQEERIADLEWEARVGLSADSSVSASPMEEDGMDGPAYEIVDAQSI
Sbjct:   61 GRLALQVVADFLEHWELHQTLSVLKLETDMATEDFLSTEELGSIVANGAAVGKGETKTPDGKPSPVMLQLLAACRAAPRDRENGLPLGAAAA--DRSERLIGEDKGRKEEEGRQEAEEGEEDGGRRGTTWRGVGVEGDGVPPRVTLRKRRGDHGGTSGTSVSGMGNGSGGEDANEPAWSVPSEPVSSATAGEREGDRQSRERENDGDAEESRFGGLLLREQPTAADDIYRGEDKSGGQDRWEHHFDGRMDESSYDFSENVESVKGAGEDPMVAAXXXXXXXXXXXXXXXXXXXXXXXXXXXVTSENAALVEQAGVYDRSCEGKEDDGPRREEGDRFSKHAGANNSYGXXXXXXVLRNGNGDSLAGFGGSSDNGGGVEKEPRSSVDGGVASGVDEWNEDYYEDDDFDGXXXXXIXNDD------GDISAADVAAKVAANAGDGEVEDEALLAEGGGTHQDGFFDPEGSRGRVSAEQEERIADLEWEARVGLSADSSVSASPMEEDGMDGPAYEIVDAQSI 571
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig1081.567.1 vs. uniprot
Match: D7FK22_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FK22_ECTSI)

HSP 1 Score: 130 bits (326), Expect = 2.530e-32
Identity = 66/70 (94.29%), Postives = 66/70 (94.29%), Query Frame = 1 
Query:    1 AGRLSLQVVADFLEHWELHQTLSVLKLETDMATEDLLSTEELGSIVANGAAVGNGETKTPEGKPSPVMLQ 210
            AGRLSLQVVADFLEHWELHQTLSVLKLETDMATEDLLSTEELGSIVANGA VG GE KTPEGK SPVMLQ
Sbjct:    3 AGRLSLQVVADFLEHWELHQTLSVLKLETDMATEDLLSTEELGSIVANGAVVGKGEMKTPEGKTSPVMLQ 72
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1081.567.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LLY1_ECTSI2.420e-25082.86Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JFJ8_9PHAE2.570e-23880.15Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FK22_ECTSI2.530e-3294.29Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1081contigE-siliculosus-1a_F_contig1081:527..4694 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start0
Stop1
Cds size1548
Model size2746
Exons5
Ec32 orthologEc-00_002240.1
Ec32 ortholog descriptionPutative cytoskeleton-associated protein
Hectar predicted targeting categoryother localisation
Ec32 orthologEc-14_002080.1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1081.567.1prot_E-siliculosus-1a_F_contig1081.567.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig1081 527..3496 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927582.94749-CDS-E-siliculosus-1a_F_contig1081:526..7361622927582.94749-CDS-E-siliculosus-1a_F_contig1081:526..736Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1081 527..736 +
1696318597.2757976-CDS-E-siliculosus-1a_F_contig1081:526..7361696318597.2757976-CDS-E-siliculosus-1a_F_contig1081:526..736Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1081 527..736 +
1622927582.9627678-CDS-E-siliculosus-1a_F_contig1081:1248..14921622927582.9627678-CDS-E-siliculosus-1a_F_contig1081:1248..1492Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1081 1249..1492 +
1696318597.2868788-CDS-E-siliculosus-1a_F_contig1081:1248..14921696318597.2868788-CDS-E-siliculosus-1a_F_contig1081:1248..1492Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1081 1249..1492 +
1622927582.9772778-CDS-E-siliculosus-1a_F_contig1081:1768..24471622927582.9772778-CDS-E-siliculosus-1a_F_contig1081:1768..2447Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1081 1769..2447 +
1696318597.295802-CDS-E-siliculosus-1a_F_contig1081:1768..24471696318597.295802-CDS-E-siliculosus-1a_F_contig1081:1768..2447Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1081 1769..2447 +
1622927582.9895551-CDS-E-siliculosus-1a_F_contig1081:2824..30831622927582.9895551-CDS-E-siliculosus-1a_F_contig1081:2824..3083Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1081 2825..3083 +
1696318597.3048835-CDS-E-siliculosus-1a_F_contig1081:2824..30831696318597.3048835-CDS-E-siliculosus-1a_F_contig1081:2824..3083Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1081 2825..3083 +
1622927583.000701-CDS-E-siliculosus-1a_F_contig1081:3340..34961622927583.000701-CDS-E-siliculosus-1a_F_contig1081:3340..3496Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1081 3341..3496 +
1696318597.3139946-CDS-E-siliculosus-1a_F_contig1081:3340..34961696318597.3139946-CDS-E-siliculosus-1a_F_contig1081:3340..3496Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1081 3341..3496 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927583.0113163-UTR-E-siliculosus-1a_F_contig1081:3496..46941622927583.0113163-UTR-E-siliculosus-1a_F_contig1081:3496..4694Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1081 3497..4694 +
1696318597.3243682-UTR-E-siliculosus-1a_F_contig1081:3496..46941696318597.3243682-UTR-E-siliculosus-1a_F_contig1081:3496..4694Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1081 3497..4694 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig1081.567.1

>prot_E-siliculosus-1a_F_contig1081.567.1 ID=prot_E-siliculosus-1a_F_contig1081.567.1|Name=mRNA_E-siliculosus-1a_F_contig1081.567.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=516bp
AGRLSLQVVADFLEHWELHQTLSVLKLETDMATEDLLSTEELGSIVANGA
AVGNGETKTPEGKPSPVMLQLLAACRAAPRDKENGLPLGAAAAAGDRSER
LIGEHKGREEEEGRQEAEEEEEDGGRRGTTWRGVGVEGDGVPPRVTLRKR
RGDHGGTNGTSVSGMGNGSGEDANEPASSVSSEPISSATVGEREGDRQSR
ERQNDGDAEESRFGGLLLRKQPTAADGKDRGEDNGGAQGRWEQHFDGRMD
ESSYDFSENVESVRGAGEGLMVATAASGVDGGGGDGESISAAAAAGGVTT
ENTALVEQAGVYDRSCEGEEDDGPRRGEGNGFSRHAGANDNPYDGGGGGA
LRNGNGDSLAGFGGSSDNGGGVEKEPRSSVDGGVASGVDEWNEDCYEDDD
FDGDDEEDSDNDDGDAGSAGGNSAADVAAKVAANAGDGDVEEEALLTGGD
GTYQDDLFDPEGSRGRVSAEQEERIADLEWEARVGLSADSSVSASPMEED
GMDGPAYEIVDAQSI*
back to top

mRNA from alignment at E-siliculosus-1a_F_contig1081:527..4694+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig1081.567.1 ID=mRNA_E-siliculosus-1a_F_contig1081.567.1|Name=mRNA_E-siliculosus-1a_F_contig1081.567.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=4168bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1081:527..4694+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
GCAGGCCGCTTGTCGCTGCAAGTCGTGGCCGACTTTTTGGAGCACTGGGA
GCTGCACCAGACCCTTTCCGTCCTCAAGCTGGAGACAGACATGGCGACGG
AGGACCTCTTGTCGACAGAGGAGCTCGGGTCTATCGTGGCGAATGGTGCC
GCGGTGGGAAACGGCGAGACGAAGACGCCTGAGGGAAAACCCTCGCCGGT
GATGCTCCAGGTGTGACATATGCAAAAGCGATGCCAACTACTTGACCTTC
TCCGTCGTGTTGTGTATTGTCCATGCCAACCGGCGATCAACGTACAGCCC
CCGTCAAAGAACATCCCCACGGAACAAACTAGAGAGGCGTGACTGCTTGC
TCAACCTGTCCTCTGCCCCTGAGATTAGAGGGGAGGTATCGGTTGTTGAT
GATTTGTCGCTCAAGTGCTTTCGGTTGTTTCGCCAACTCCTGATTCGCCT
CTCGGTAAGGACCCTTGCCCGATGGGCGTGAACAACACGCCATGTACAAG
CTGCAGATAGACGAGCAAGCCCAGAGTGGTACACCAGTAGTGTCCCACCT
ACAACCGCCCACGCGGTGCTTGACGTGCGCGTTGTGCTCGACAACCCCCG
CCCCCGAAGCACCACCTCTTTCTGCCATCCCTCTGCGACAAGCAACTCTG
ATCCGCTTCCGTGCCCGTCTGTCGTGTATTGATACAATCTGTCTTGACAC
CCCCCCCCACGCTTGAGAAAAGCTGCTAGCGGCGTGTCGGGCAGCACCTC
GGGACAAAGAAAACGGCTTACCTCTAGGGGCCGCCGCCGCCGCCGGCGAC
CGGAGCGAGAGGTTAATCGGCGAGCACAAGGGCCGGGAGGAGGAAGAGGG
CAGGCAGGAAGCGGAAGAAGAAGAAGAAGATGGTGGACGGCGGGGCACCA
CGTGGAGAGGGGTGGGCGTGGAAGGGGATGGCGTGCCGCCAAGGGTCACG
CTGAGGAAACGAAGAGGTTAGTAAGATGCGGCTGTAATAGCGGGCGTTGA
TGTTGATACCAATGTTGATATTGTCGCTGATGCTGCTGTACTGTCTGCGT
TGCCTTACTTGTTGGATTCCTCAAGAGTGGCTCGAATCGGTACACAGCGC
TTCTGGCAGGATGGAAGAGTACAGCGGTTCCCGCAACGTCGAAACGTGGA
GAATCCCGTGGTCCTGTCCTGTCCCGTTTCGTGTTCGCTCTCTCGAGAAA
CACACCAACAGCACGTCGCCCTCTTTCGTCTCCCGCCAACAGGAGACCAC
GGTGGAACCAATGGCACCAGCGTTAGCGGCATGGGCAACGGCAGCGGAGA
AGACGCCAACGAACCGGCCTCGAGCGTTTCGTCTGAACCAATATCGTCGG
CCACGGTAGGAGAAAGAGAAGGCGACCGGCAGAGCCGGGAGCGGCAGAAC
GACGGCGACGCCGAGGAGAGCCGGTTTGGCGGGCTGCTACTACGCAAACA
ACCTACGGCTGCCGATGGCAAGGACCGCGGGGAAGACAACGGGGGGGCGC
AGGGCAGGTGGGAGCAGCACTTCGACGGGAGGATGGACGAGAGCTCGTAC
GACTTCTCGGAGAACGTTGAGTCTGTCAGGGGGGCTGGTGAGGGTCTGAT
GGTAGCAACCGCCGCCTCTGGCGTGGACGGGGGCGGGGGCGACGGCGAAT
CGATCTCGGCGGCGGCGGCGGCGGGGGGCGTGACGACTGAGAACACGGCA
CTAGTGGAACAAGCAGGGGTGTACGACCGCTCGTGCGAAGGCGAGGAGGA
CGACGGGCCTCGCCGAGGGGAAGGCAATGGATTTTCAAGGCACGCTGGTG
CCAACGACAACCCGTACGACGGCGGCGGCGGCGGTGCGTTGAGAAATGGC
AATGGAGACAGCCTGGCCGGTTTTGGTGGTTCGAGCGACAACGGCGGCGG
CGTCGAGAAGGAGCCTCGGAGGTAGGAAGGAATTACGGGAAATAGAAAAC
AGTGGCGGGATGAACGCGCGAACACAGAGTCTTGCTGGAAACGCGGGAAA
AGTGTTTGGATTTCCGGCACGGCACCACCTGCCTGTCTGCCTGCCTACCT
GGTTCTCTTTCTCGCGGTTTGTTCGAAGTCGTGCTGTTGTCTCTTGCCAC
ACAATCTCCAGAGCAAATTGATTTCCGATCCTGACATCTTAACTCCGTGC
TATTGTAGGGATGGTGTTGACGCATCAACCCCCCGCCCCCCTCATCAACA
GCTCGAAGTTTCGCCGAGGCATGAAAATCCCATGATCTATATATGTCTTC
ACAAGCTACTAAATATCGTTCGACTTGCGTATTGCGCGCCGCCAGCAGCA
GCGTGGACGGGGGCGTGGCGAGCGGCGTTGACGAGTGGAACGAGGACTGC
TACGAGGACGATGACTTCGATGGCGACGACGAGGAGGATAGTGATAACGA
TGACGGTGATGCTGGTAGTGCTGGTGGTAATAGTGCCGCCGATGTAGCCG
CCAAGGTAGCTGCAAATGCCGGCGATGGAGACGTGGAGGAGGAGGCGCTG
CTGACGGGGGGGGATGGCACATACCAGGACGACTTGTTTGATCCGGAGGG
CTCGCGGGTGAGCTATACATGTTGGCTTGGGTTGAAGGTTTATTTGCTTT
TGCTCACGCCTGGGCCCCTTTTCCCTGTTTGTGTGGTTTGGACTGGTTAA
CGTGAGGCCCGATTGGCGGCAGTGCAGGAATGGGCGGATGGTTGTGTCAC
TATCGCCCCCCAATTCTCGCTTGCCTTCTCCTCGGGTGCCCCCCCCCCTC
CCCCCGCCGCAACCCACGTGGTGAAAACCCGGACCCCTTAAAACGGGTCA
AAACCTAACTTCAGGGTAGGGTCAGCGCGGAGCAAGAGGAGCGAATCGCG
GACCTGGAGTGGGAGGCGAGAGTCGGCCTATCAGCTGACAGCAGCGTGTC
GGCGAGCCCGATGGAAGAAGACGGCATGGACGGCCCGGCGTACGAGATCG
TGGACGCGCAGAGCATTTAGTACGGGGTGGTGTGTGTGTTTATTTGGTGT
ATTGCGGTGAAATGATGTAGGCGTATGGTGTGAAACTTGAAGCGGCTAGA
GTCGAGGGAAGGAACTGGTTATCCCTTGTTGTTGAGGCTGCTTTGGGTCG
TGTGTGTTTTCGGTGGCTTGTGTATGGTAATTTTGTCGGGTGTTGTGTTG
TGTCGCAGTGTGCGCGTGTTATGTGGCGTAAAAAGTGGAAGAGCTTGTTG
CGAATTTTTTGTTTTCTTGTTGGACGATGACATGTAGAACGCTTACTTGG
GGCCGATTAGTTGTCGCCCTCCGAGGTTGGGTAGATCGGACCTCTGTCCT
GTTTCAAGGGTCACGTACAGAGGAATTTCTTTTTTCCCATTCACTCACGC
CTTACAGATAGCAGTTCGGTAAATTAGCCTCTGATCCCCGAAGACTTGCT
TCTTTGATCCAGGGGATTGCTCGTTGAGCCAAGGAGGACGTGTATTTATC
TCCCAAGATGAATGAAGGGTTTTGAAAGCCGAGATGGAAGGTGCGAACAT
TACACACGTGGATAGACGTGGGTTGCTTGCTCTCTTCTCTCTTCGGGAGT
TGGAAAGTATTTTGTTAGGGGAGGATGTCGTAAGGAATCAGCGAGACTCT
CAATTAAGGTGGGAATGGTATATTCGAGCTAGAGGGAGATATCGCAAGGA
ATCAGCGCAGTTCTTACCAAGAATGGGATTGGTACGTTCGAGCTACGAGT
ACCATGTTGTAATGGCAATCTGTCGACGGCCATAGCTCTCGTGGTGTTGG
TGAGGCGGAAGGCATCTGTGATATCAGATGCAGCAACTCAATGTGTTGGT
TTTATCCTCGCGTTTTGTGTGTGTTTTAGCACACGGCAGCAGCAGCTTCA
GTCAGCTTCTACCTAGAGACGAAATTTGTTGTGTGAAGTCTTGAGTTGAT
GGTATGCACACAAAAGCCAGACACATGACTGCTGTCTTTACCCAGTGGTT
GGTCGCGAACTCGAAAGTTCATGGAGTTGTCCTCTTTCCGCTGGTGGTAT
AGTCTACAAATGATGCCGTGCGCGATCATGGCTCTATACTATTCGAGGTG
CATGCAGTAGATAAATGTTCGTTAGGACTGCTTCCCCCCACGTATGTATC
TCTTTTGCGTCTCTTGAGCGACAACAACAAAGAACAACGGTCCTAAATAC
GCGGGCGCGAGTGTGGCC
back to top

Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1081:527..4694+

>mRNA_E-siliculosus-1a_F_contig1081.567.1 ID=mRNA_E-siliculosus-1a_F_contig1081.567.1|Name=mRNA_E-siliculosus-1a_F_contig1081.567.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=3096bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1081:527..4694+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
GCAGGCCGCTTGTCGCTGCAAGTCGTGGCCGACTTTTTGGAGCACTGGGA
GCTGCACCAGACCCTTTCCGTCCTCAAGCTGGAGACAGACATGGCGACGG
AGGACCTCTTGTCGACAGAGGAGCTCGGGTCTATCGTGGCGAATGGTGCC
GCGGTGGGAAACGGCGAGACGAAGACGCCTGAGGGAAAACCCTCGCCGGT
GATGCTCCAGGCAGGCCGCTTGTCGCTGCAAGTCGTGGCCGACTTTTTGG
AGCACTGGGAGCTGCACCAGACCCTTTCCGTCCTCAAGCTGGAGACAGAC
ATGGCGACGGAGGACCTCTTGTCGACAGAGGAGCTCGGGTCTATCGTGGC
GAATGGTGCCGCGGTGGGAAACGGCGAGACGAAGACGCCTGAGGGAAAAC
CCTCGCCGGTGATGCTCCAGCTGCTAGCGGCGTGTCGGGCAGCACCTCGG
GACAAAGAAAACGGCTTACCTCTAGGGGCCGCCGCCGCCGCCGGCGACCG
GAGCGAGAGGTTAATCGGCGAGCACAAGGGCCGGGAGGAGGAAGAGGGCA
GGCAGGAAGCGGAAGAAGAAGAAGAAGATGGTGGACGGCGGGGCACCACG
TGGAGAGGGGTGGGCGTGGAAGGGGATGGCGTGCCGCCAAGGGTCACGCT
GAGGAAACGAAGAGCTGCTAGCGGCGTGTCGGGCAGCACCTCGGGACAAA
GAAAACGGCTTACCTCTAGGGGCCGCCGCCGCCGCCGGCGACCGGAGCGA
GAGGTTAATCGGCGAGCACAAGGGCCGGGAGGAGGAAGAGGGCAGGCAGG
AAGCGGAAGAAGAAGAAGAAGATGGTGGACGGCGGGGCACCACGTGGAGA
GGGGTGGGCGTGGAAGGGGATGGCGTGCCGCCAAGGGTCACGCTGAGGAA
ACGAAGAGGAGACCACGGTGGAACCAATGGCACCAGCGTTAGCGGCATGG
GCAACGGCAGCGGAGAAGACGCCAACGAACCGGCCTCGAGCGTTTCGTCT
GAACCAATATCGTCGGCCACGGTAGGAGAAAGAGAAGGCGACCGGCAGAG
CCGGGAGCGGCAGAACGACGGCGACGCCGAGGAGAGCCGGTTTGGCGGGC
TGCTACTACGCAAACAACCTACGGCTGCCGATGGCAAGGACCGCGGGGAA
GACAACGGGGGGGCGCAGGGCAGGTGGGAGCAGCACTTCGACGGGAGGAT
GGACGAGAGCTCGTACGACTTCTCGGAGAACGTTGAGTCTGTCAGGGGGG
CTGGTGAGGGTCTGATGGTAGCAACCGCCGCCTCTGGCGTGGACGGGGGC
GGGGGCGACGGCGAATCGATCTCGGCGGCGGCGGCGGCGGGGGGCGTGAC
GACTGAGAACACGGCACTAGTGGAACAAGCAGGGGTGTACGACCGCTCGT
GCGAAGGCGAGGAGGACGACGGGCCTCGCCGAGGGGAAGGCAATGGATTT
TCAAGGCACGCTGGTGCCAACGACAACCCGTACGACGGCGGCGGCGGCGG
TGCGTTGAGAAATGGCAATGGAGACAGCCTGGCCGGTTTTGGTGGTTCGA
GCGACAACGGCGGCGGCGTCGAGAAGGAGCCTCGGAGGAGACCACGGTGG
AACCAATGGCACCAGCGTTAGCGGCATGGGCAACGGCAGCGGAGAAGACG
CCAACGAACCGGCCTCGAGCGTTTCGTCTGAACCAATATCGTCGGCCACG
GTAGGAGAAAGAGAAGGCGACCGGCAGAGCCGGGAGCGGCAGAACGACGG
CGACGCCGAGGAGAGCCGGTTTGGCGGGCTGCTACTACGCAAACAACCTA
CGGCTGCCGATGGCAAGGACCGCGGGGAAGACAACGGGGGGGCGCAGGGC
AGGTGGGAGCAGCACTTCGACGGGAGGATGGACGAGAGCTCGTACGACTT
CTCGGAGAACGTTGAGTCTGTCAGGGGGGCTGGTGAGGGTCTGATGGTAG
CAACCGCCGCCTCTGGCGTGGACGGGGGCGGGGGCGACGGCGAATCGATC
TCGGCGGCGGCGGCGGCGGGGGGCGTGACGACTGAGAACACGGCACTAGT
GGAACAAGCAGGGGTGTACGACCGCTCGTGCGAAGGCGAGGAGGACGACG
GGCCTCGCCGAGGGGAAGGCAATGGATTTTCAAGGCACGCTGGTGCCAAC
GACAACCCGTACGACGGCGGCGGCGGCGGTGCGTTGAGAAATGGCAATGG
AGACAGCCTGGCCGGTTTTGGTGGTTCGAGCGACAACGGCGGCGGCGTCG
AGAAGGAGCCTCGGAGCAGCGTGGACGGGGGCGTGGCGAGCGGCGTTGAC
GAGTGGAACGAGGACTGCTACGAGGACGATGACTTCGATGGCGACGACGA
GGAGGATAGTGATAACGATGACGGTGATGCTGGTAGTGCTGGTGGTAATA
GTGCCGCCGATGTAGCCGCCAAGGTAGCTGCAAATGCCGGCGATGGAGAC
GTGGAGGAGGAGGCGCTGCTGACGGGGGGGGATGGCACATACCAGGACGA
CTTGTTTGATCCGGAGGGCTCGCGGCAGCGTGGACGGGGGCGTGGCGAGC
GGCGTTGACGAGTGGAACGAGGACTGCTACGAGGACGATGACTTCGATGG
CGACGACGAGGAGGATAGTGATAACGATGACGGTGATGCTGGTAGTGCTG
GTGGTAATAGTGCCGCCGATGTAGCCGCCAAGGTAGCTGCAAATGCCGGC
GATGGAGACGTGGAGGAGGAGGCGCTGCTGACGGGGGGGGATGGCACATA
CCAGGACGACTTGTTTGATCCGGAGGGCTCGCGGGGTAGGGTCAGCGCGG
AGCAAGAGGAGCGAATCGCGGACCTGGAGTGGGAGGCGAGAGTCGGCCTA
TCAGCTGACAGCAGCGTGTCGGCGAGCCCGATGGAAGAAGACGGCATGGA
CGGCCCGGCGTACGAGATCGTGGACGCGCAGAGCATTTAGGGTAGGGTCA
GCGCGGAGCAAGAGGAGCGAATCGCGGACCTGGAGTGGGAGGCGAGAGTC
GGCCTATCAGCTGACAGCAGCGTGTCGGCGAGCCCGATGGAAGAAGACGG
CATGGACGGCCCGGCGTACGAGATCGTGGACGCGCAGAGCATTTAG
back to top