prot_E-siliculosus-1a_F_contig10801.564.1 (polypeptide) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_E-siliculosus-1a_F_contig10801.564.1
Unique Nameprot_E-siliculosus-1a_F_contig10801.564.1
Typepolypeptide
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Sequence length174
Homology
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig10801.564.1 vs. uniprot
Match: D8LLA7_ECTSI (RNA polymerase sigma factor n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLA7_ECTSI)

HSP 1 Score: 303 bits (777), Expect = 1.840e-98
Identity = 160/173 (92.49%), Postives = 163/173 (94.22%), Query Frame = 0 
Query:    1 MSSWSRLRPRPRSWCFGSARFLLSVAAIVRSGLHIATDAFTLPSGAGHPPRSRSASSRLLLLEVDAETATPAGNPQSRPTSDAWCARSVAGNALRGACPGHDRLPGGRRHRGCSSRLGAVGTAAPISEVVVGVGGAAGPAVLRESPRVRKASKQEVRAMTRGLNSITAFAAYG 173
            MSS SRLRPRPRSWC GSARFLLSVAAIVRSGLHIATDAFTLPSGAGHPPRSRSAS RLLLLEV+AETATPA NPQSRPTSDAWCARSVAGNALRGACPGHDRLP GRRHRGCSSRLGAVGTAAP SEVVVGVGGAAGPAVL  S RVRKAS QEVRA+TRGLNSIT+FAAYG
Sbjct:    1 MSSRSRLRPRPRSWCSGSARFLLSVAAIVRSGLHIATDAFTLPSGAGHPPRSRSASERLLLLEVEAETATPARNPQSRPTSDAWCARSVAGNALRGACPGHDRLPRGRRHRGCSSRLGAVGTAAP-SEVVVGVGGAAGPAVLGASARVRKASNQEVRAVTRGLNSITSFAAYG 172
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig10801.564.1 vs. uniprot
Match: A0A6H5KNQ9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNQ9_9PHAE)

HSP 1 Score: 268 bits (686), Expect = 9.500e-86
Identity = 148/173 (85.55%), Postives = 153/173 (88.44%), Query Frame = 0 
Query:    1 MSSWSRLRPRPRSWCFGSARFLLSVAAIVRSGLHIATDAFTLPSGAGHPPRSRSASSRLLLLEVDAETATPAGNPQSRPTSDAWCARSVAGNALRGACPGHDRLPGGRRHRGCSSRLGAVGTAAPISEVVVGVGGAAGPAVLRESPRVRKASKQEVRAMTRGLNSITAFAAYG 173
            MSS SRLRPRPRSW  GSARFLLSVAAIVRSGLHIATDAFTLPSGAG PPR+ SAS RLLL EV+AETA PA NPQSRPTSDAWCARSVAGNALR ACPGHDR PGGRRHRG SSRLGAVGTA   SEVVVG+GGAA PA+L  S R RKASKQEVRAMTRGLNSIT+FAAYG
Sbjct:    1 MSSRSRLRPRPRSWFVGSARFLLSVAAIVRSGLHIATDAFTLPSGAGRPPRNGSASERLLL-EVEAETAPPARNPQSRPTSDAWCARSVAGNALRCACPGHDRQPGGRRHRGFSSRLGAVGTAP--SEVVVGLGGAARPALLGASARARKASKQEVRAMTRGLNSITSFAAYG 170
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig10801.564.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LLA7_ECTSI1.840e-9892.49RNA polymerase sigma factor n=1 Tax=Ectocarpus sil... [more]
A0A6H5KNQ9_9PHAE9.500e-8685.55Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0 of Ectocarpus siliculosus 1a female
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 15..26
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 32..173
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..14
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 27..31
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..31
NoneNo IPR availableSIGNALP_EUKSignalP-noTMSignalP-noTMcoord: 1..27
score: 0.519

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig10801contigE-siliculosus-1a_F_contig10801:542..1502 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Ectocarpus siliculosus 1a female2022-09-29
Diamond blastp: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-16
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig10801.564.1mRNA_E-siliculosus-1a_F_contig10801.564.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalemRNAE-siliculosus-1a_F_contig10801 542..1502 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_E-siliculosus-1a_F_contig10801.564.1 ID=prot_E-siliculosus-1a_F_contig10801.564.1|Name=mRNA_E-siliculosus-1a_F_contig10801.564.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=174bp
MSSWSRLRPRPRSWCFGSARFLLSVAAIVRSGLHIATDAFTLPSGAGHPP
RSRSASSRLLLLEVDAETATPAGNPQSRPTSDAWCARSVAGNALRGACPG
HDRLPGGRRHRGCSSRLGAVGTAAPISEVVVGVGGAAGPAVLRESPRVRK
ASKQEVRAMTRGLNSITAFAAYG*
back to top