mRNA_E-siliculosus-1a_F_contig1080.563.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_E-siliculosus-1a_F_contig1080.563.1
Unique Name	mRNA_E-siliculosus-1a_F_contig1080.563.1
Type	mRNA
Organism	Ectocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)

Homology

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BLAST of mRNA_E-siliculosus-1a_F_contig1080.563.1 vs. uniprot
Match: D7FR20_ECTSI (Peptidylprolyl isomerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FR20_ECTSI)

HSP 1 Score: 511 bits (1316), Expect = 3.400e-178
Identity = 271/279 (97.13%), Postives = 271/279 (97.13%), Query Frame = 1

Query:   67 MITGAPTATMLLMLSPAARAFVRPVGPAALSGVRWSKVNSASHQTRAKSSEPTKMALESEEDKCMYAFGAALATQTDQFRKLLTVEERKIGLMGFSDHWLESGMQLDHSQYAEKVNNILQARNEALEKSMAEKGVGFLADAAKEEGAVQTASGMVVQTVVEGTGASPLPTDTVKASALVHYHGTLIDGSVFDSSVMRGSPISFPLNGVIKGWTEGVQLMKVGGKSKLTIPPELAYGEKGTGPIPANATLVFEVELLEIEGGAPTPQAAPSTEAAAPPQE 903
            MI GAPTATMLLMLSPAARAFVRPVGPAAL GVRWSKVNSASHQTRAKSS PTKMALESEEDKCMYAFGAALATQTDQFRKLLTVEERKIGLMGFSDHWLESGMQLDHSQYAEKVNNILQARNEALEKSMAEKGVGFLADAAKEEGAVQTASGMVVQTVVEGTGASPLPTDTVK    VHYHGTLIDGSVFDSSVMRGSPISFPLNGVIKGWTEGVQLMKVGGKSKLTIPPELAYGEKGTGPIPANATLVFEVELLEIEGGAPTPQAAPSTEAAAP QE
Sbjct:    1 MIAGAPTATMLLMLSPAARAFVRPVGPAALCGVRWSKVNSASHQTRAKSSAPTKMALESEEDKCMYAFGAALATQTDQFRKLLTVEERKIGLMGFSDHWLESGMQLDHSQYAEKVNNILQARNEALEKSMAEKGVGFLADAAKEEGAVQTASGMVVQTVVEGTGASPLPTDTVK----VHYHGTLIDGSVFDSSVMRGSPISFPLNGVIKGWTEGVQLMKVGGKSKLTIPPELAYGEKGTGPIPANATLVFEVELLEIEGGAPTPQAAPSTEAAAPSQE 275

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BLAST of mRNA_E-siliculosus-1a_F_contig1080.563.1 vs. uniprot
Match: A0A835ZCE7_9STRA (Peptidylprolyl isomerase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZCE7_9STRA)

HSP 1 Score: 224 bits (572), Expect = 4.310e-67
Identity = 122/206 (59.22%), Postives = 153/206 (74.27%), Query Frame = 1

Query:  223 TKMALESEEDKCMYAFGAALATQTDQFRKLLTVEERKIGLMGFSDHWLESGMQLDHSQYAEKVNNILQARNEALEKSMAEKGVGFLADAAKEEGAVQTASGMVVQTVVEGTGASPLPTDTVKASALVHYHGTLIDGSVFDSSVMRGSPISFPLNGVIKGWTEGVQLMKVGGKSKLTIPPELAYGEKGTGPIPANATLVFEVELLEI 840
            T M+L S+ D+  YA G ALA QT +F+ LLT EER++ + G +D WL+  +++D    A++VN +L+ R     + M+  G  FLADAAKE+GA QTASG+V++T+ EG G SP  TD V+    V+YHGTL D +VFDSS  RG PISFPLNGVIKGWTEG+QLMKVGG +KLTIPPELAYG +GTGPIP +ATLVFEVELL I
Sbjct:    3 THMSL-SKGDETFYALGVALAQQTAKFKDLLTPEERELVVQGMTDGWLDKPIKVDPEPLADQVNGMLEQRMSKAVEQMSAAGAQFLADAAKEDGATQTASGLVIKTIKEGDGPSPKATDKVE----VNYHGTLPDNTVFDSSRDRGQPISFPLNGVIKGWTEGLQLMKVGGVAKLTIPPELAYGAQGTGPIPPHATLVFEVELLGI 203

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BLAST of mRNA_E-siliculosus-1a_F_contig1080.563.1 vs. uniprot
Match: A0A6B1CMQ1_9BACT (Peptidyl-prolyl cis-trans isomerase n=4 Tax=Gemmatimonadetes bacterium TaxID=2026742 RepID=A0A6B1CMQ1_9BACT)

HSP 1 Score: 197 bits (501), Expect = 3.240e-56
Identity = 118/232 (50.86%), Postives = 154/232 (66.38%), Query Frame = 1

Query:  154 LSGVRW-SKVNSASHQTRAKSSEPTKMALESEEDKCMYAFGAALATQT-DQFRKLLTVEERKIGLMGFSDHWLESGMQLDHSQYAEKVNNILQARNEALEKSMAEKGVGFLADAAKEEGAVQTASGMVVQTVVEGTGASPLPTDTVKASALVHYHGTLIDGSVFDSSVMRGSPISFPLNGVIKGWTEGVQLMKVGGKSKLTIPPELAYGEKGTGPIPANATLVFEVELLEIE 843
            L GV W S V  A +   AK+S P K  +E+EE+K +YA G A+A  + + FR   +  E  + + GF+D        +   ++  K+N +LQ R + ++   A +G  F   AA+EEGAVQT SG++ + +  GTGASP  TD VK    VHYHG+LIDG+VFDSSV RG P++F L+ VIKGWTEG+Q+MKVGGK+KLTIPPELAYG  G   IPANATL+FEVELL IE
Sbjct:    7 LLGVGWTSLVLLACNGQEAKTSTPAK--VETEEEKVLYALGLAIAQNSLEPFRGQFSDAEIAVVMQGFADAVKGGEPIVSLQEFGPKINPMLQERLQKVQAQAAVEGEAFREKAAQEEGAVQTTSGLIFKELTAGTGASPKATDRVK----VHYHGSLIDGTVFDSSVERGEPVTFALDQVIKGWTEGLQMMKVGGKAKLTIPPELAYGPGGRSGIPANATLIFEVELLGIE 232

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BLAST of mRNA_E-siliculosus-1a_F_contig1080.563.1 vs. uniprot
Match: A0A7S3TIY2_9SPIT (Peptidylprolyl isomerase n=1 Tax=Strombidinopsis acuminata TaxID=141414 RepID=A0A7S3TIY2_9SPIT)

HSP 1 Score: 186 bits (471), Expect = 5.100e-52
Identity = 108/204 (52.94%), Postives = 138/204 (67.65%), Query Frame = 1

Query:  232 ALESEEDKCMYAFGAALATQTDQFRKLLTVEERKIGLMGFSDHWLESGMQLDHSQYAEKVNNILQARNEALEKSMAEKGVGFLADAAKEEGAVQTASGMVVQTVVEGTGASPLPTDTVKASALVHYHGTLIDGSVFDSSVMRGSPISFPLNGVIKGWTEGVQLMKVGGKSKLTIPPELAYGEKGTGP-IPANATLVFEVELLEI 840
            AL +E+ K  YA G  +  Q   F+     E   + L G     + S  ++  ++Y  K   +LQA+  A  +  AEKG  FL +AAKEEGAVQT SG+VV+T+ EGTG+SP   +TV+    VHY G LIDGSVFDSS  RG PISFPL+GVI GWTEG+QLMKVGGK+KLTIP ++AYG++G+ P IP  ATLVF+VELL+I
Sbjct:   16 ALTTEDAKAYYAIGYNIGKQLADFKTCEPTELDDM-LAGIKASLVGSEPEVPLAEYVPKAMELLQAKAVAAAEVQAEKGREFLQEAAKEEGAVQTDSGLVVKTITEGTGSSPTAAETVQ----VHYEGKLIDGSVFDSSYARGEPISFPLSGVIAGWTEGLQLMKVGGKAKLTIPSDIAYGDRGSPPAIPPKATLVFQVELLDI 214

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BLAST of mRNA_E-siliculosus-1a_F_contig1080.563.1 vs. uniprot
Match: A0A7S3AXL5_9EUKA (Peptidylprolyl isomerase n=1 Tax=Haptolina ericina TaxID=156174 RepID=A0A7S3AXL5_9EUKA)

HSP 1 Score: 184 bits (467), Expect = 3.830e-51
Identity = 100/206 (48.54%), Postives = 133/206 (64.56%), Query Frame = 1

Query:  223 TKMALESEEDKCMYAFGAALATQTDQFRKLLTVEERKIGLMGFSDHWLESGMQLDHSQYAEKVNNILQARNEALEKSMAEKGVGFLADAAKEEGAVQTASGMVVQTVVEGTGASPLPTDTVKASALVHYHGTLIDGSVFDSSVMRGSPISFPLNGVIKGWTEGVQLMKVGGKSKLTIPPELAYGEKGTGPIPANATLVFEVELLEI 840
            T+M LE++E+K +Y  GA +  Q  + +  +  +E    L+G  D  +    Q+D  +YA     + +A+ + + +  A  G+ FL  AA EEGAV+T +G+V    V G+G SP  TD V+    VHY G L+DG+VFDSS+ RG PI FPLNGVIKGWTEG+Q MK GGK+KLTIP EL YG  GTGPIP NA LVF+VELL +
Sbjct:   38 TRMVLETDEEKALYVLGANVGRQLGELQ-CMDSDELDSVLLGMKDSIMGEEPQVDIQKYAPLAQQMFKAKQDVIAEKAASAGMMFLEAAASEEGAVKTDTGLVFLETVTGSGDSPTATDKVR----VHYEGKLVDGTVFDSSIARGEPIEFPLNGVIKGWTEGLQRMKPGGKAKLTIPSELGYGSGGTGPIPPNAVLVFDVELLAV 238

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BLAST of mRNA_E-siliculosus-1a_F_contig1080.563.1 vs. uniprot
Match: A0A836XH01_9BACT (Peptidyl-prolyl cis-trans isomerase n=1 Tax=Candidatus Handelsmanbacteria bacterium TaxID=2099671 RepID=A0A836XH01_9BACT)

HSP 1 Score: 183 bits (465), Expect = 6.270e-51
Identity = 108/210 (51.43%), Postives = 137/210 (65.24%), Query Frame = 1

Query:  238 ESEEDKCMYAFGAALATQT-DQFRKLLTVEERKIGLMGFSDHWLESGMQLDHSQYAEKVNNILQAR-----NEALEKSMAEK--GVGFLADAAKEEGAVQTASGMVVQTVVEGTGASPLPTDTVKASALVHYHGTLIDGSVFDSSVMRGSPISFPLNGVIKGWTEGVQLMKVGGKSKLTIPPELAYGEKGTGPIPANATLVFEVELLEIE 843
            ++EE+K  YA G ++A  T   F+   T EE  +   GF    +E    +D + Y +++N+ LQ R         E+++ EK  GV F+  AA E GAV+TASG+V    V G+GA P PTD VK    VHYHGTLIDG+VFDSSV R  P+ FPLN VI GWTEGV +MKVGGK+KL IPPELAYG++ TG IP  +TL+FEVELL IE
Sbjct:   28 QTEEEKKRYAIGLSVAGNTLGTFKGEFTAEEVAMIAEGFKAGMVEGEPAIDMNDYGQELNDYLQQRFANVQARTQEQAVGEKEMGVAFIEQAAAEPGAVKTASGLVYIEQVAGSGAQPQPTDKVK----VHYHGTLIDGTVFDSSVERNEPVDFPLNQVIAGWTEGVAMMKVGGKAKLVIPPELAYGDRPTGKIPPGSTLIFEVELLGIE 233

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BLAST of mRNA_E-siliculosus-1a_F_contig1080.563.1 vs. uniprot
Match: A0A7S3SHL9_EMIHU (Peptidylprolyl isomerase n=2 Tax=Emiliania huxleyi TaxID=2903 RepID=A0A7S3SHL9_EMIHU)

HSP 1 Score: 180 bits (457), Expect = 1.480e-49
Identity = 105/216 (48.61%), Postives = 137/216 (63.43%), Query Frame = 1

Query:  196 QTRAKSSEPTKMALESEEDKCMYAFGAALATQTDQFRKLLTVEERKIGLMGFSDHWLESGMQLDHSQYAEKVNNILQARNEALEKSMAEKGVGFLADAAKEEGAVQTASGMVVQTVVEGTGASPLPTDTVKASALVHYHGTLIDGSVFDSSVMRGSPISFPLNGVIKGWTEGVQLMKVGGKSKLTIPPELAYGEKGTGP-IPANATLVFEVELLEI 840
            +T  + S   + +LE++ DK  Y+ G  +  Q   F      E   + L G  +  L    Q+  S+Y  K   +L  +   + ++MA KG   LA AAKEEGAVQTASG+VVQT+ EG G +P    TVK    VHY G L+DGS+FDSS  RG PI FPL+GVI GWTEG+QLMK GGK+KLTIP ++AYGE+G+ P IP  ATL+F+VELLE+
Sbjct:   37 RTAVRRSSGVRASLETDTDKAFYSIGFNVGRQLSDFAACEPAEIDSV-LAGIRECLLGDEPQVPLSEYVPKAMTLLGEKQAKVAEAMAAKGAETLAAAAKEEGAVQTASGLVVQTLSEGKGDAPTRESTVK----VHYEGQLVDGSIFDSSYRRGEPIEFPLSGVIAGWTEGLQLMKPGGKAKLTIPSDIAYGERGSPPAIPPKATLIFQVELLEV 247

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BLAST of mRNA_E-siliculosus-1a_F_contig1080.563.1 vs. uniprot
Match: A0A3C1EMQ7_9BACT (Peptidyl-prolyl cis-trans isomerase n=1 Tax=Elusimicrobia bacterium TaxID=2030800 RepID=A0A3C1EMQ7_9BACT)

HSP 1 Score: 180 bits (456), Expect = 2.550e-49
Identity = 108/231 (46.75%), Postives = 141/231 (61.04%), Query Frame = 1

Query:  205 AKSSEPTKMAL--ESEEDKCMYAFGAALATQTDQFRKLLTVEERKIGLMGFSDHWLESGMQLDHSQYAEKVNNILQARNEALEKSMAEKGVGFLADAAKEEGAVQTASGMVVQTVVEGTGASPLPTDTVKASALVHYHGTLIDGSVFDSSVMRGSPISFPLNGVIKGWTEGVQLMKVGGKSKLTIPPELAYGEKGTGPIPANATLVFEVELLEIEGGAPTPQAAPSTEAAA 891
            AKS+ P K A   ++EE K  YA G  L+ Q   F   L+  E K   MGF D  L +  Q++   Y  K+N++ ++R         EK   FLA AAKE GA    SG++ + +  G+GASP   DT+KA    HYHGTL+DG+VFDSSV RG P  FP+ GVIK W EG+  MKVGGK+KL  P ++AYG++G   IP  ATL+FEVELLEI   +  P++AP T+A A
Sbjct:   30 AKSAAPVKSAEVPKTEEQKTFYALGLYLSEQVSIFN--LSAAELKYVQMGFKDAVLNNPHQVELQVYGPKLNDLAKSRVAVKSSKEKEKSKDFLAKAAKEPGAQGFPSGLIYKEIKAGSGASPTAADTIKA----HYHGTLVDGTVFDSSVQRGQPAEFPVQGVIKCWQEGIPKMKVGGKAKLICPSDIAYGDRGNSSIPGGATLIFEVELLEIVKPS-VPESAPKTQAPA 253

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BLAST of mRNA_E-siliculosus-1a_F_contig1080.563.1 vs. uniprot
Match: UPI002011F464 (FKBP-type peptidyl-prolyl cis-trans isomerase n=2 Tax=Azoarcus sp. L1K30 TaxID=2820277 RepID=UPI002011F464)

HSP 1 Score: 176 bits (445), Expect = 3.590e-48
Identity = 102/201 (50.75%), Postives = 128/201 (63.68%), Query Frame = 1

Query:  244 EEDKCMYAFGAALATQTDQFRKLLTVEERKIGLMGFSDHWLESGMQLDHSQYAEKVNNILQARNEALEKSMAEKGVGFLADAAKEEGAVQTASGMVVQTVVEGTGASPLPTDTVKASALVHYHGTLIDGSVFDSSVMRGSPISFPLNGVIKGWTEGVQLMKVGGKSKLTIPPELAYGEKGTGP-IPANATLVFEVELLEIE 843
            E+ K +YA G  +A QT  F+  LT  E +    G+ D  + +   +D   Y  KVN + QAR  A  +  A KG   LA AA E+GAV+  SG V Q++ EGTGA P  TDTVK    VHY GTL DG+ FDSS  R  P  FPLNGVIK WTEGV +MKVGGK++LT PP+ AYG++G G  IP  ATLVF++ELLE++
Sbjct:   25 EDQKTLYALGQLVARQTAVFQ--LTASELESVQKGWQDATVGAKSAVDLQVYGPKVNALGQARQAAAAEKSAAKGKELLAKAATEKGAVKAPSGFVYQSITEGTGAQPAATDTVK----VHYRGTLPDGTEFDSSYKRNEPTEFPLNGVIKCWTEGVAMMKVGGKARLTCPPDTAYGDRGAGGVIPPGATLVFDIELLEVK 219

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BLAST of mRNA_E-siliculosus-1a_F_contig1080.563.1 vs. uniprot
Match: A0A1W1I0T9_9BACT (Peptidyl-prolyl cis-trans isomerase n=1 Tax=Nitrospira japonica TaxID=1325564 RepID=A0A1W1I0T9_9BACT)

HSP 1 Score: 176 bits (445), Expect = 3.930e-48
Identity = 104/200 (52.00%), Postives = 127/200 (63.50%), Query Frame = 1

Query:  244 EEDKCMYAFGAALATQTDQFRKLLTVEERKIGLMGFSDHWLESGMQLDHSQYAEKVNNILQARNEALEKSMAEKGVGFLADAAKEEGAVQTASGMVVQTVVEGTGASPLPTDTVKASALVHYHGTLIDGSVFDSSVMRGSPISFPLNGVIKGWTEGVQLMKVGGKSKLTIPPELAYGEKGTGP-IPANATLVFEVELLEI 840
            ++ K  YA G  ++     F   LT  E      G SD  L+   ++D   +  KVN + QAR  AL  +  + G  F+A AA E GA +T SG +V T+ EG GA+P  TDTVK    VHYHGTLIDG+VFDSSV RG P +FPLN VIK WTEGVQL+KVGGKSKL  P  +AYG++G+ P I   ATLVFEVELLEI
Sbjct:   28 DDQKTFYALGLLISQSLTPFA--LTESELDFVRSGMSDGVLKKTPKVDLQAFGPKVNQLQQARASALADTEKKAGATFIAKAAAESGAKKTESGAIVTTIKEGKGATPTATDTVK----VHYHGTLIDGTVFDSSVKRGEPATFPLNQVIKCWTEGVQLIKVGGKSKLVCPSAIAYGDRGSPPTIKPGATLVFEVELLEI 221

The following BLAST results are available for this feature:

BLAST of mRNA_E-siliculosus-1a_F_contig1080.563.1 vs. uniprot

BLAST of mRNA_E-siliculosus-1a_F_contig1080.563.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
D7FR20_ECTSI	3.400e-178	97.13	Peptidylprolyl isomerase n=1 Tax=Ectocarpus silicu...	[more]
A0A835ZCE7_9STRA	4.310e-67	59.22	Peptidylprolyl isomerase n=1 Tax=Tribonema minus T...	[more]
A0A6B1CMQ1_9BACT	3.240e-56	50.86	Peptidyl-prolyl cis-trans isomerase n=4 Tax=Gemmat...	[more]
A0A7S3TIY2_9SPIT	5.100e-52	52.94	Peptidylprolyl isomerase n=1 Tax=Strombidinopsis a...	[more]
A0A7S3AXL5_9EUKA	3.830e-51	48.54	Peptidylprolyl isomerase n=1 Tax=Haptolina ericina...	[more]
A0A836XH01_9BACT	6.270e-51	51.43	Peptidyl-prolyl cis-trans isomerase n=1 Tax=Candid...	[more]
A0A7S3SHL9_EMIHU	1.480e-49	48.61	Peptidylprolyl isomerase n=2 Tax=Emiliania huxleyi...	[more]
A0A3C1EMQ7_9BACT	2.550e-49	46.75	Peptidyl-prolyl cis-trans isomerase n=1 Tax=Elusim...	[more]
UPI002011F464	3.590e-48	50.75	FKBP-type peptidyl-prolyl cis-trans isomerase n=2 ...	[more]
A0A1W1I0T9_9BACT	3.930e-48	52.00	Peptidyl-prolyl cis-trans isomerase n=1 Tax=Nitros...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
E-siliculosus-1a_F_contig1080	contig	E-siliculosus-1a_F_contig1080:29064..37219 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90	2022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female	2021-02-24

Properties


Property Name	Value
Start	1
Stop	1
Cds size	906
Model size	1608
Exons	9
Ec32 ortholog	Ec-09_002840.1
Ec32 ortholog description	FKBP domain protein
Hectar predicted targeting category	other localisation
Best eggNOG OG	NA\|NA\|NA
Best tax level	Eukaryota
COG Functional cat.	O
EggNOG OGs	COG0545@1,KOG0543@2759
EggNOG free text desc.	FK506 binding
Seed eggNOG ortholog	2880.D7FR20
Seed ortholog evalue	1.4e-143
Seed ortholog score	515.8
Taxonomic scope	Eukaryota

Relationships

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_E-siliculosus-1a_F_contig1080.563.1	prot_E-siliculosus-1a_F_contig1080.563.1	Ectocarpus siliculosus Ec863f_EcPH12_90f female	polypeptide	E-siliculosus-1a_F_contig1080 29064..36517 +

The following CDS feature(s) are a part of this mRNA:

The following UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622927582.6944544-UTR-E-siliculosus-1a_F_contig1080:36517..37219	1622927582.6944544-UTR-E-siliculosus-1a_F_contig1080:36517..37219	Ectocarpus siliculosus Ec863f_EcPH12_90f female	UTR	E-siliculosus-1a_F_contig1080 36518..37219 +
1696318597.1550324-UTR-E-siliculosus-1a_F_contig1080:36517..37219	1696318597.1550324-UTR-E-siliculosus-1a_F_contig1080:36517..37219	Ectocarpus siliculosus Ec863f_EcPH12_90f female	UTR	E-siliculosus-1a_F_contig1080 36518..37219 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at E-siliculosus-1a_F_contig1080:29064..37219+
coding sequence from alignment at E-siliculosus-1a_F_contig1080:29064..37219+

protein sequence of mRNA_E-siliculosus-1a_F_contig1080.563.1

>prot_E-siliculosus-1a_F_contig1080.563.1 ID=prot_E-siliculosus-1a_F_contig1080.563.1|Name=mRNA_E-siliculosus-1a_F_contig1080.563.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=302bp
MLTCDRDSHEQTTAVQQVNRETMITGAPTATMLLMLSPAARAFVRPVGPA
ALSGVRWSKVNSASHQTRAKSSEPTKMALESEEDKCMYAFGAALATQTDQ
FRKLLTVEERKIGLMGFSDHWLESGMQLDHSQYAEKVNNILQARNEALEK
SMAEKGVGFLADAAKEEGAVQTASGMVVQTVVEGTGASPLPTDTVKASAL
VHYHGTLIDGSVFDSSVMRGSPISFPLNGVIKGWTEGVQLMKVGGKSKLT
IPPELAYGEKGTGPIPANATLVFEVELLEIEGGAPTPQAAPSTEAAAPPQ
E*

mRNA from alignment at E-siliculosus-1a_F_contig1080:29064..37219+

Legend: polypeptideCDSUTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_E-siliculosus-1a_F_contig1080.563.1 ID=mRNA_E-siliculosus-1a_F_contig1080.563.1|Name=mRNA_E-siliculosus-1a_F_contig1080.563.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=8156bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1080:29064..37219+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGCTCACCTGTGACAGAGACTCACACGAGCAAACCACAGCCGTACAGCA
GGTGAACAGAGAGACAATGATCACCGGAGCTCCCACCGCAACGATGCTCC
TGATGCTCTCCCCGGCAGCGCGCGCTTTCGTGCGACCGGTTGGCCCCGCG
GCCCTGTCTGGCGTGCGGTGGTCGAAGGTCAACAGCGCCTCCCACCAGGT
TGGTCGTCGTCGTTTGTCAGCAGCAGCAGCCCCTTGCTTGCACACGCAGA
ACGGTGCACGCACCACAACCTTAAAGGGGTTACGACAGCGCCAAGAAGTG
CACAGAATGTGGGCGTAGAGTAGCTGAGAAGGTGGCGGGCTTGCTGGCGT
CAAGGCGATCGAAACTTCAATTGATGTACGTAGGACGGGGATGCATGCGG
GGTTTTGAGCGGTTGTGGCAACATCGAATATTTCGGTTGCTTTGCCAACA
CCCCGCCCCCCTGCTGATGTGCTCCCGACGTACTGCTGTGCCGACCGAGC
ACCAGTGCTTCACCAACACGTGTGTCTGGTGTTTGGTGGCGTCTCGGTCC
CCTTCACCCACGACGTCTGTTCCTACCTCTGGTACACGTGGCAGGGGTGC
AATTTTTGAGATTTGTCATGGAACACACCTCCTTGTGCACGGCGGAGAGA
GAAAAACCTGCAATTGCATGATCGATCCTGCGTGTCTGTGTCATTCCCCG
TTGCAACATTTTCAAAGCCGTATGAATGTCATCCCAGCAGCAGCAGCTGC
GCACGCAGAGCTTCCGCCCACTGGCGTAGGGACAGGATACGGTGTGGTGA
TGTAGATGCTATCATGCAGCATCCAATAAAAAAGTTAATTTTTGAAGCAA
TTTTTCATGCCGCGCGGTGCGCTCGCTGTCGTCCCTAGATTTTTTCTCCT
CAAGTCCCCACGTCCAACTGCTCCCTGGTCCAGCAGTTCAACCTACTTCA
GTGTGTTCCCCAGAGGACCATCACAACCACTGGGGTTTTAACAACACAGG
AGGGTGCCAGAGCCATGTTTGGGCGTACCCTTGATTGAGTCGTTTTCATA
CCTTTGTCTTTTGTAATACCGTTGTCTCTGTTGCACTACAGTACATACAG
CATATGATCAAGGCCCAAAAACTCTCGGTACGTTGCATTTTGGGACCGTT
CGTTTCCCTACACGTGTTGGAGTAGGCAACAAGAGGTGTACCGCGTACTG
CATGCAACGAACTTGACGGTGAATGCACTACTGCAGATAACAAGCGGGAG
GAGAGCCGAAAAGCACGAAACCCGCCCAACAAACAGCACCTCGGCGAAAT
CGAGAGGGGAAGACCAGGGGTGGTATCTCACGTCACACACTTGCGCACAC
AATTTACAACTCGGACAATCTCCCGACTTGCAATACAACAAGCAGTCCTG
CGGGTGAAGGTAGACGCGTGTCTGCCATTGGTCAAGACACAGGCCAGATC
TTTCCCTGCTCCCACGCCTCGTTTTTTTTACGCGAAACAATAATAGTGGG
CTGGGTTGCGCATTTAGGGTTGCTGCGCCAGCCGATAAAGCAAGCTAAAC
GAAATATCGTTGTGTTTTCTTTTCTCACAATAAACAAACACGAACACGAC
GAATTATTCATCTCTCGATCCACAGGAGGTATGTAGGAGTCTGGGATGAA
TTGCAATGAGCTCATGGCGTTAGCAGACACGCTACAATATAATACCTGTG
TTATGGAGTGTTCTACGATTCCCCGAGCGGCATAACCCGGGACATCTCCC
CTGTGGGGTTGCAACAGGCTCCACTACTGTTTTTTTTTAGAAAGTACTAC
TGTTTTTTTTGTTTTCCTCCTACAGCAGTACATTTGCGCCCCGACCCCGT
CATGGGAGTCCTGCACCAAACACGACTCACGCCGTGTAGGCGGCGTGTGT
GACGGACCGTTTCGAAACTGTTTGTCCTCGCGCTGAGCGCAACCCCTAAC
GCGCCGAGCACAACCCCTAACGCAGAACTGCCGTGTGGAAAGATCTCATG
CTTGCCGCCCGTTTTTTTCGCCTCGCTACTGCTTGTTGTGTGCGTGCCAC
CGCTCGTCCGCGCGGGCAATGCCACACCCGGACTGGATGGATGGATGGTA
CGGACGGATGCCACCGCTGGCTGCTGTACGGACGGCTGGCTGGCTGGCTC
TCTCCGCTATGCCCTTTTGTTTTTGTCTTCATGCCACCCTCTTGCCACCG
CTGTCCACAACATGAACGACAACGACTGCGACGGTGGCAGACGCGGGCCA
AGTCGTCAGAGGTAAGTCGGCCGGCTCAATCTTGCGCCCTACATATCCGG
TTGTGTACCGTAAGAGAAGGTTTTGCGTCCTCACGAGTGTAGGCTGACGA
AGACTCGGTGGGGTCTCTGACAGCCGCTTTGGAGTGTAATCTGGCTCCAC
GCTGCATTTGAACGTGTGTTGCTACAAGAAGGTTTGCGCGTGCGTTGAGA
AACACGCCGGGAAAATAAAAAATGCCGACCACCTGCCTGCAGTGCGTTTA
GGCCATGTCTCCCGTCCAGGCAGATCAACCACCCCTAAGGCCGCGGAGCC
TCCAGACCTACTCCTTGTCACGGCTTGCACTTGTCTTGATGGTGTAGATT
ATCGTTACTGGTATAACTCTTTCTCCCTGTGATGGTGTGGATGAGTGTTA
TTGATCTCTTCTCTATCTTCGCCCGCCCCCTCTTGCTTAGAACGGCTTGC
TCGTGGCGTGTGGGTGTGTACGAAGGTTTATTGATCTGTCTCTTGTCTCT
CCTTCTCCCTCTCTCTTCTCTGCCTCTCCCTCCCTTTCTCTACATCTCTT
TCTTCCTCTCTCCCTGTCTGCCTCCCTCCCCCCCCCCCCCCCCCCCCCCC
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
TTCTCCCTCTCTCTCCCTCCCTCTCTCTCGGCAAAAGCCGACGAAGATGG
CGCTAGAGAGCGAGGAGGACAAGTGCATGTATGCCTTCGGCGCGGCACTC
GCCACCCAGACCGACCAGTTCAGGAAGGTGAAGCAAAAGTGTACTGCTGT
ACCGCTTCGTGACTTGCTTGGACTGGACACACAAGCGGAGGAACACAAGT
GTAGACCATCATGGCCTTGCGTACGTTCCAGTCGTTGGCACTGTTGTACA
TGGGGTGGGTGTGCCGAAAAGGCAGCCTCGTAGATGCCAGTACGGTACCG
GAGGAAGAGCATATGTATGGTGTAGCACTTCCGGGACAAACGTGGAACGT
GCCAACCCATGACGAGAGGCGGAGAGCGACTTTTGCCCCTTTTGGGGGAC
ACCAGCTTCGCCGCTGCTGCTATCTGCTGTCGTTGGTGTCATTGGGAGTT
GTTGATGTTGTTGTTGTTTTTTGTCTTTACATCACAGTCTTGTGTAAGTT
GCTAGTCCCGCTAGGGAAAACCGACTAGGAGCGGTCGGACGAAGCAACTG
AAACCTCCTTTGACGCACCTGGCTTTTTTTTGTGTCCCTCTCTCTCCCTC
TCCCACTTCCTTCCCTTCAATCCTCTCCCTTCTTGTCTGATTTCCCCGCT
AATGAATGCTGTTCCATCGACACCGTTTGTACACACACGGCCGCACAGCT
GCTTACCGTCGAGGAGAGAAAGATCGGGCTCATGGGGTTCAGCGACCACT
GGCTGGAGTCGGGGATGCAACTGGACCACAGTCAGTACGCAGAGAAGGTG
AGGGGGTAGGCATAACCTGTGAGGGAGAAGATAAGGAAGGCTCAACCCTG
GTCTAACTGTCTCACAACAGCCGACCTTTTACTCCACTGACTGTTTTTCT
CGGCTTGTCTAGTTTCATTCATTTGCGTGTGATCAGCAGGAGGGGGGGGC
GTACTCAAAGGAAAGTGGCGGCGATTTACGCCATCATCTGGTAAGCCCAC
CGTGATATTTTTGGATGATGAACGCCGGTCGTCTCTCTCTCTCTCTCTCA
TTTGTCTTCTCTTGTCTCTCTCCACCTCTCTCGTTTGCTGCGTGATTTTT
TTTGTTCCTTCAATGTGGCCTAAAGGTGAACAACATCCTCCAGGCGCGCA
ACGAGGCGCTGGAGAAGAGCATGGCGGAGAAGGGGGTGGGTTTCTTAGCC
GACGCGGCGAAGGAGGAGGGGGCCGTGCAAACAGCCAGGTACCGCTTCAT
ATGTCTTCATCGTTGTCTTTCGGTACATGCGTTCGTTGCTCTCGTTTTTG
GGTGGTTTCGGGACGTTTGTTGCCGCTACTTCGCGCTTTGGTGTCGGTAC
CCGCAAGAGTTGCTTGGCCCTTCTTCGGCAATCTTGCTTGGGGGGGGGGC
GTATTCTTATGTGTTCCATGCCTTTGGCGGTTAGACCATTGACCACGCGT
CCTCGAGAGGACGAAGCATTGTTCCCACAGGACCGTTCACCGATGGCCAA
TTGTTCCTTCCTACTTCGCCAAATGCGGCTCAAAGATGTCCTCCCTAGTC
TATCAATCCTATCGATATCACTTCCCGCCTTTCCAACCCACTTCCTATGC
CCCAGGTACGGCTGCTGTCTTTTCCTCGCTATTCCATGCTTCAAACATCT
CGCTGTGTGCATACCTTCCTTCTATTTTCCCAGTTCAGTCATGTACACTT
CCCTCTCCTTGTATAACGAACACTCCGCAACAACATGAACCCGGTCTTCG
CACTCGGCGTCGCAATCACATTTGAACTTGTCTTCGTCTACATTCTCGAA
GGCGAATGTCCCCGGTCCTGAATTTGACCTTCAGCTTGTCCCTGCATCCA
TTAGTCCCTGTACCTAGGTACTCCTTGAACCCTGTTCCTTCTTTCAACAT
TCCGTACACTTCTAGACCCTCCTTATCCTTGGTTTCTTTCCTTAGATTAT
GTTGTTCTCTCTCGGCACAAGCAACAGATATCTTCTCCTTGAACCCCTCT
AGACCCTCCGTTTCCAGCGTTTCACCTTCGTCAATCTCGAATCCCTTCCA
TACGTCCACAGGGGGGGTAGGCCTAGATATTGGAATGCTGAAGTTCTCCG
AGTTTCTACGTCAACGTGCTCTTTCTCGAAAATAGCTCTTTGGACGCTGC
TATTGTAGTTGATTCTCTTCTCGTCGTTTTCTTAGCGCTCTCTGTGTACA
GCCTGGCACAGCGTTGCCCCCACAACCCCTAACGTTGCTCGGCCATGCTG
TGCCCGTTCCGCTCGTTGGCGTGCCCTTTGTTGCGCTACTTTAGCGGTAT
GGTGGTCCAGACGGTGGTGGAGGGGACCGGAGCGTCACCATTGCCCACCG
ACACCGTGAAGGCGAGTGCCCTCGTTTTACCGTACCGCACAGTACCGTGC
CGTACCGTACTATACCGTACCGTGCCATCGTAGGTGATTTTTGTCTTGGG
TCCGCCGAGGCTGATCCATTGGCCGGCGTGCACGCTCTCGAACCGGGGGG
GTATCTTTCCTTGTATACTTCAAGAATAGGGGATGTTTTGGCGTGGTGTC
ATGTGTGTGCTGGTGTTTTGTTATGTCTTCAGTTCCATTTAGCATCAACC
GTAGTAGCCGACTGACCATTTCAAAACGTCAGTAAGTGCGGCTGAGGAGC
GCCGTCCTAAAGGCCATTTTCCGGGACCCCGTGAGGGGACGCCATTGGAG
AGGCTAGGCTGTGTGTGTGACTCAAGCGTGTAAGTTGTTCCGTGCTGCTA
TGATAGGTATGCATATGCCAAAGTCGTACCTTCAATTTTGTTTTTGTTTC
GTTGGTATCGAAGCAGTATATATGTTAAAACAATTTTTCATCATCATTTT
TGTGTGCGACCTCAGGTGCACTACCACGGTACCCTCATCGACGGGTCTGT
GTTTGACTCTAGCGTTATGCGAGGAAGCCCCATCAGCTTCCCCCTCAACG
GCGTCATCAAGGGCTGGACAGAGGGTGTCCAGCTCATGAAGGTGCGTGCA
TGTTGTATGCATGTGTCTCTGCGACCCGGCGAAACAACGGGAGAACAAGA
GTTGTATTTTTGTCAGCAACAACAGAGCGCACATTGGCACGCGCTTGCGT
ACATGTAGCCGCAACACAGCGAAGACTACATTTAGAGTGTTGGTGGCAAG
ACTTGTAATGTGGGCGGTGTTGAGGTGACGTTTTCTACGTTTGGTCGCAT
GTGTGCGTGGAGGTTTTCTCGGGATGACAGGACACGCTCCGGTCAGGAAC
TTGGGCACAACCGTATGTGTTTGCTCTTTATGCTTCGTGTCTTTCCTTCC
CGTCCGCGCTGAAGCCCTGGGAACTAACCCACCTTGCGGTACCTCAAGGC
ACCGCGGTGCTTGAGGTGCGCCGGCTGCGGGGGCAACGAAGAATCCCTTG
AGTGTTGCTGCCTCAACGTGCAATGCATGTGTTTGAGCAGTGCACACGGC
AGCAGGTCTGACGGGCCCCTGATGTGGCCCCAACGGTTAGCGCCGCCGAT
GTTATTCGTATCACCGTGAAATACACCCAAACCGCCCCCCATGTGAACCC
TCATTCTCTCTGTTGTCAAGGTGGGAGGAAAGAGCAAGTTGACGATCCCG
CCGGAGCTTGCCTACGGGGAGAAGGGCACCGGCCCCATCCCAGCAAACGC
CACCTTGGTTTTCGAGGGTAAGCATAGACTACTGCTGTAGCCGTTAAAGA
AGAAGCTGCTGTCGGTGTTTTTTGGTTGTCTTGACCTTTTGAAAGCCGTT
GGTTCCTCCTTGTCTTGTCCCTCTACACCGGTATGTACCTCTGATGTCGG
TAGCACCAGTTGGATGAACAAAGGCTGACACACGTGCTGGTTGGCGCTTG
GCATGCATCGCCGATGATGTACATAAACCGGAGTACTGTACAGGCGAGGT
CTACGAATGTCGTATTTGCGCGAGTATGGAGCGGTCTTTGCTTCCTTTTT
ACCGGTCTTGAGGAAGGCTCCCTTTTCCAACTGTGTAGTCGGGGGCAAAC
AAGCAGTAAAATTGCCGAAATGATTACGCGAAATCCCTGCGGCTCATTGA
CAGCCAAAAGACCCTATTGGCTTGCATTTTGGGCCAATGGTTCCCGATCC
ATAAAGTAGACCTTCCGTCGAGCTCGCACCACATTCCCATACAGTACTCC
CCCCAATGAGGTATTTCCATGCTCTGACGTATGTGTTTCTGTTCGATCTC
GCAAATACCACGTTCCGATTTTGCGTCCAAAAAACCGAAAAACGCGCATT
GCCCAATACCTACCATATATGATCTATACAGCATGTTGCATTCTCAAAAC
TGAAAATATAATGAATGTTGCATCCCCGACACCGAAAATGCAATTACCCC
CCCAAACGAAAAAACAACAACACATGGCGAATCTTTTCTCCCAAGGAACA
TAGTATTCCCGTGCCCTGACTGACGCCTGTACGTTCGTTTCTGCGTTCTG
TGTATGCCCCCCCTGTTGCAGTGGAGCTGCTGGAGATCGAGGGCGGAGCC
CCCACCCCCCAAGCCGCCCCATCCACCGAAGCCGCTGCCCCCCCCCAAGA
ATAGAGAGATTCCAAACGGAAAAAAATAACGCCGGTGTATGAATATATAC
GCACATAGAGAAGAATGTGGGGTGATAGACATGGTGGGGAGACAGGTACT
GTGATACGTTGTATTTCTGCCGTTTGTTTGCGGGCTTTTGCCTTCGCGGG
GTATACATGTCTATCGGCGCGGGGTTAGTTGTCGTCCGCACGATACAACA
ATGCTGCTGCTGCTGCTGCTGCGTCCTGAAAGGAGCGGAGCGGTGGTGGT
TGTGGTATGCGTTATAGTGTCGGGATTTGTTTTCGTTTTCGTGGAGGTTG
TTGTCTACAAGTACGTGGTAAATGTTTCTTTACCGATGATCGAGGCGAGA
GTTGGTTGTTTGAGACGGGCGCTGGAAGAAAGCTACAAGCAGTTTACAGC
TACAGTAGTGCTGTATCATGTCACAGCCGCCCGCGGTCAGATTTTGGGAG
GTGTAAAAATTCCCTGGGTGCGATCACCGGCGGGGGGGCGGCTGGCAAGT
CGTCTGGCTTGTAAGTCTTGAGCACCTCCAACCTCCAACCGATAGTTACG
AATGCCCCGCCCGCCGCGCAACGCAGCGTCCGACGCCCATCCATCCCTAA
GGAAGGCGTTACGTGAGCGCCTTGTACCATCAAACATAGAGCAAAATAAC
CCGCGACGAGCCCTGGGAAGATCGGAGGTTGGAGAGGGTGGGTCTGTCCC
CTTCCC

Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1080:29064..37219+

>mRNA_E-siliculosus-1a_F_contig1080.563.1 ID=mRNA_E-siliculosus-1a_F_contig1080.563.1|Name=mRNA_E-siliculosus-1a_F_contig1080.563.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1812bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1080:29064..37219+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGCTCACCTGTGACAGAGACTCACACGAGCAAACCACAGCCGTACAGCA
GGTGAACAGAGAGACAATGATCACCGGAGCTCCCACCGCAACGATGCTCC
TGATGCTCTCCCCGGCAGCGCGCGCTTTCGTGCGACCGGTTGGCCCCGCG
GCCCTGTCTGGCGTGCGGTGGTCGAAGGTCAACAGCGCCTCCCACCAGAT
GCTCACCTGTGACAGAGACTCACACGAGCAAACCACAGCCGTACAGCAGG
TGAACAGAGAGACAATGATCACCGGAGCTCCCACCGCAACGATGCTCCTG
ATGCTCTCCCCGGCAGCGCGCGCTTTCGTGCGACCGGTTGGCCCCGCGGC
CCTGTCTGGCGTGCGGTGGTCGAAGGTCAACAGCGCCTCCCACCAGACGC
GGGCCAAGTCGTCAGAGACGCGGGCCAAGTCGTCAGAGCCGACGAAGATG
GCGCTAGAGAGCGAGGAGGACAAGTGCATGTATGCCTTCGGCGCGGCACT
CGCCACCCAGACCGACCAGTTCAGGAAGCCGACGAAGATGGCGCTAGAGA
GCGAGGAGGACAAGTGCATGTATGCCTTCGGCGCGGCACTCGCCACCCAG
ACCGACCAGTTCAGGAAGCTGCTTACCGTCGAGGAGAGAAAGATCGGGCT
CATGGGGTTCAGCGACCACTGGCTGGAGTCGGGGATGCAACTGGACCACA
GTCAGTACGCAGAGAAGCTGCTTACCGTCGAGGAGAGAAAGATCGGGCTC
ATGGGGTTCAGCGACCACTGGCTGGAGTCGGGGATGCAACTGGACCACAG
TCAGTACGCAGAGAAGGTGAACAACATCCTCCAGGCGCGCAACGAGGCGC
TGGAGAAGAGCATGGCGGAGAAGGGGGTGGGTTTCTTAGCCGACGCGGCG
AAGGAGGAGGGGGCCGTGCAAACAGCCAGGTGAACAACATCCTCCAGGCG
CGCAACGAGGCGCTGGAGAAGAGCATGGCGGAGAAGGGGGTGGGTTTCTT
AGCCGACGCGGCGAAGGAGGAGGGGGCCGTGCAAACAGCCAGCGGTATGG
TGGTCCAGACGGTGGTGGAGGGGACCGGAGCGTCACCATTGCCCACCGAC
ACCGTGAAGGCGAGTGCCCTCCGGTATGGTGGTCCAGACGGTGGTGGAGG
GGACCGGAGCGTCACCATTGCCCACCGACACCGTGAAGGCGAGTGCCCTC
GTGCACTACCACGGTACCCTCATCGACGGGTCTGTGTTTGACTCTAGCGT
TATGCGAGGAAGCCCCATCAGCTTCCCCCTCAACGGCGTCATCAAGGGCT
GGACAGAGGGTGTCCAGCTCATGAAGGTGCACTACCACGGTACCCTCATC
GACGGGTCTGTGTTTGACTCTAGCGTTATGCGAGGAAGCCCCATCAGCTT
CCCCCTCAACGGCGTCATCAAGGGCTGGACAGAGGGTGTCCAGCTCATGA
AGGTGGGAGGAAAGAGCAAGTTGACGATCCCGCCGGAGCTTGCCTACGGG
GAGAAGGGCACCGGCCCCATCCCAGCAAACGCCACCTTGGTTTTCGAGGG
TGGGAGGAAAGAGCAAGTTGACGATCCCGCCGGAGCTTGCCTACGGGGAG
AAGGGCACCGGCCCCATCCCAGCAAACGCCACCTTGGTTTTCGAGGTGGA
GCTGCTGGAGATCGAGGGCGGAGCCCCCACCCCCCAAGCCGCCCCATCCA
CCGAAGCCGCTGCCCCCCCCCAAGAATAGTGGAGCTGCTGGAGATCGAGG
GCGGAGCCCCCACCCCCCAAGCCGCCCCATCCACCGAAGCCGCTGCCCCC
CCCCAAGAATAG