mRNA_E-siliculosus-1a_F_contig108.558.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_E-siliculosus-1a_F_contig108.558.1
Unique Name	mRNA_E-siliculosus-1a_F_contig108.558.1
Type	mRNA
Organism	Ectocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)

Homology

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BLAST of mRNA_E-siliculosus-1a_F_contig108.558.1 vs. uniprot
Match: D7FHB5_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FHB5_ECTSI)

HSP 1 Score: 512 bits (1319), Expect = 7.720e-180
Identity = 287/359 (79.94%), Postives = 292/359 (81.34%), Query Frame = 2

Query:   47 MMGIRSLSLVLPLACSPAGSFVLPATRLRPVAPLRQDCDVYYSRGAARSGTDAAVKGRERFMSMELGFDPLKRRCSCQPVGAHRSRSLPLRSQQAQASAEETTVSADPTQETLPECISNDAVSYWVHPAKESHIWLVGVVHGAKSGVQQLVEEAIGGIRPEVVMVELDADRICVLPPGEAMETRNGLWXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXESVSPVIEIQTAVREAGACGARVLLGDRDYETTGRLLEKAKRADMASAKERKEFNDLTTSFDCEESTRAITRKECAQMKERAPKVFKVMCTQRDQVMAKNLMKLRGEQTTVAVIGMAHLDGVEKVLKGHGWQRRRA 1123
            MMGIRSLSLVLPLACSPA SFVLPATRLR VAPLR DCDV YSRGAARSGTDAAVKGRERFMSMELG +P+K RCSCQPVGAHRSRSLPLRS+Q QASAEET +SADPTQETLPECISNDAVSYWVHPAKESHIWLVGVVHGAKSGVQ LVEEAIGGIRPEVVMVELDADRICVLPPGEAMETRNGLW                  XXXX      XXXX   ESVSP+IEIQTAVREAGACGARVLLGDRDYETTGRLLEKAKRADMASAKERKEFNDLTTSFDCE                               VMAKNLMKLRGEQTTVAVIGMAHLDGVEKVLKGHGWQRRRA
Sbjct:    1 MMGIRSLSLVLPLACSPAESFVLPATRLRSVAPLRLDCDVQYSRGAARSGTDAAVKGRERFMSMELGLNPVKHRCSCQPVGAHRSRSLPLRSKQVQASAEETNLSADPTQETLPECISNDAVSYWVHPAKESHIWLVGVVHGAKSGVQ-LVEEAIGGIRPEVVMVELDADRICVLPPGEAMETRNGLWWWAPEEEPEGSADVDEDGXXXXEYAEDDXXXXDEEESVSPMIEIQTAVREAGACGARVLLGDRDYETTGRLLEKAKRADMASAKERKEFNDLTTSFDCE-------------------------------VMAKNLMKLRGEQTTVAVIGMAHLDGVEKVLKGHGWQRRRA 327

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BLAST of mRNA_E-siliculosus-1a_F_contig108.558.1 vs. uniprot
Match: A0A6H5K4M4_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K4M4_9PHAE)

HSP 1 Score: 139 bits (349), Expect = 1.730e-33
Identity = 128/404 (31.68%), Postives = 182/404 (45.05%), Query Frame = 2

Query:   50 MGIRSLSLVLPLACSPAGSFVLPATRLRPVAPLRQDCDVYYSRGAARS---GTDAAVKGRERF--MSMELGFDPLKRRCSCQPVG---AHRSRSLPLRSQQAQASAEETTVSADPTQETLPECISNDAVSYWVHPAKESHIWLVGVVHGAKSGVQQLVEEAIGGIRPEVVMVELDADRIC--------------------VLPPGEAMETRN----GLWXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXESVSPVIEIQTAVREAGACGARVLLGDRDYETTGRLLEKA-KRADMAS--------------AKERKEFNDLTTSFDCEESTRAITRKECAQMKERAPKVFKVMCTQRDQVMAKNLMKLRGEQTTVAVIGMAHLDGVEKVLKGHGWQRRR 1120
            M +R+LSL LP A   A SFV+P     P   L       +  G+ R+   GT  A  G  +   + MEL    L RR   + +G   A  + +  L +   QA+A  T V   P  +  P  + +DAVSY  +P K+S +WLVG  H + S    LVE  I  I+P+VVMVELDA R+                     + PP E   TRN      +                                   + +S   E   A+ EA ACGA++LLGDRD   T R L +A ++ D+                A +      + +S D  ++ R   RK     KE AP+++  M  +RD+VMA NLM L G+Q TVAV+G+AH+DG+E +L  +GW+ +R
Sbjct:    1 MVLRTLSLALPFASLLAESFVVPP----PSLSLSSASGSTWHVGSVRNPEEGTTTAATGNPKHPGLLMELENTQLDRRALLRTIGGALASLASASALTASPQQAAAAGTAVGRRPGAKRSPTFLCDDAVSYLYNPTKQSEVWLVGTAHISNSSAT-LVENVIRQIKPQVVMVELDAQRVGSFMKPSKQGEKTLADGTGKEIAPPAE--RTRNPFFGAFFKQLLDPKVPVNDRITDFFAAALGKAISKMYESMDQKGLSSGQEFTIAINEARACGAKLLLGDRDVRITLRRLSEALRKIDLQKISQSGQMETGLGLEALDGSSVESINSSLDILKN-RETMRKVIGFYKEEAPELYNAMIGERDKVMAVNLMGLDGKQVTVAVVGLAHVDGIEGILMANGWKCQR 396

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BLAST of mRNA_E-siliculosus-1a_F_contig108.558.1 vs. uniprot
Match: D7FHB7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHB7_ECTSI)

HSP 1 Score: 129 bits (325), Expect = 7.470e-31
Identity = 102/298 (34.23%), Postives = 138/298 (46.31%), Query Frame = 2

Query:  335 ASAEETTVSADPTQETLPECISNDAVSYWVHPAKESHIWLVGVVHGAKSGVQQLVEEAIGGIRPEVVMVELDADRICVLPPGEAMETRNGL-WXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXESV----------------------SPVIEIQTAVREAGACGARVLLGDRDYETTGRLLEKAKRADMA----------------SAKERKEFNDLTTSFDCEESTRAITRKECAQMKERA-PKVFKVMCTQRDQVMAKNLMKLRGEQTTVAVIGMAHLDGVEKVLKGHGW 1108
            AS E    SA+   E +P   SND VSY  +P   S IWLVGVVHG ++ V+ L +  +   RP+VVM+ELD+ R+  LPPGEA +  +GL W                                    S                         V E++ AV EA ACGARVLLGDRD+E T R L  A  AD                  S   RK+F  L      +  TR    +  A MK  +  +  + M  +RD+VMA NLM ++G+  TVA++G+ H+DG+E++LK +GW
Sbjct:    9 ASHEGAQFSANARSEAVPAFTSNDGVSYLRNPDTGSEIWLVGVVHGQETSVE-LSKSVVRTTRPQVVMLELDSKRLDDLPPGEAQKAEDGLTWFMPEKQPDDAVAQYVTLEGGGDDVELSRGDRWKGPFSFMSSSRAKSFVGAIKAMVDVFEEEEVSEMEVAVLEAQACGARVLLGDRDFEETKRRLVAAGLADTVGDERLDDPEALLNDSMSVSNRKKFAGLDLR---KPETRETAGEHYAAMKRLSNQRALEAMVPERDEVMASNLMTIKGKPITVALVGLFHVDGIERILKRNGW 302

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BLAST of mRNA_E-siliculosus-1a_F_contig108.558.1 vs. uniprot
Match: A0A6H5KLL9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLL9_9PHAE)

HSP 1 Score: 130 bits (327), Expect = 2.420e-30
Identity = 129/415 (31.08%), Postives = 179/415 (43.13%), Query Frame = 2

Query:   50 MGIRSLSLVLPLACSPAGSFVLPATRLRPVAPLRQDCDVYYSRGAARSGTD---AAVKGRERFMSMELGFDPLKRRCS-------------CQPV-----GAHRSRS-LPLRSQQAQASAEETTVSADPTQETLPECISNDAVSYWVHPAKESHIWLVGVVHGAKSGVQQLVEEAIGGIRPEVVMVELDADRICVLPPGEAMETRNGL-WXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXESV----------------------SPVIEIQTAVREAGACGARVLLGDRDYETTGRLLEKAKRADMA----------------SAKERKEFNDLTTSFDCEESTRAITRKECAQMKERA-PKVFKVMCTQRDQVMAKNLMKLRGEQTTVAVIGMAHLDGVEKVLKGHGW 1108
            M +R+  ++L     P  SFVLP T +              +R  A   TD     V G     S   G  PL+RRCS             C+ +     GA  SR+ + +R    + +     V A+   E +P   SND VSY  +P   S IWLVGVVHG ++ V+ L +  +   RP+VVM+ELD+ R+  LPPGEA +  +GL W                                    +                         V E++ AV EA ACGARVLLGDRD+E T R L  A  AD                  S   RK F  L      +  TR    +  A MK  +  +  + M  +RD+VMA+NLM L+G+  TVA++G+ H+DG+E++LK +GW
Sbjct:    1 MWLRAGPVLLGFCSMPTVSFVLPPTPIL----------ARVNRRGATCTTDFRVPVVNGGGHGGSAGPGAKPLQRRCSRIAPKSCRCCFNFCRGMSHAFGGAPTSRATIGMRLASREGNHH---VPANTPSEAIPAFASNDGVSYLRNPDTGSEIWLVGVVHGQETSVE-LSKSVVRTTRPQVVMLELDSSRLDDLPPGEAQKAEDGLTWFMPQKQPDNAVAQGVTSRGGGDDVDLPRGEKWKGPFAFMSSSRVKSFVGAMKAIIDVFEEEEVSEMEVAVLEAQACGARVLLGDRDFEETKRRLVAAGLADTVGDERLDDPEALLNDSMSVSNRKTFAGLDLR---KPDTREAAGEHYAAMKRLSNQRALEAMVPERDEVMARNLMTLKGKPITVALVGLFHVDGIERILKRNGW 398

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BLAST of mRNA_E-siliculosus-1a_F_contig108.558.1 vs. uniprot
Match: A0A6H5LN04_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LN04_9PHAE)

HSP 1 Score: 99.0 bits (245), Expect = 1.490e-19
Identity = 62/160 (38.75%), Postives = 84/160 (52.50%), Query Frame = 2

Query:  368 PTQETLPECISNDAVSYWVHPAKESHIWLVGVVHGAKSGVQQLVEEAIGGIRPEVVMVELDADRICVLPPGEAMETRNGLWXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXESVSPVIEIQTAVREAGACGARVLLGDRDYETTGRLLEKAKRAD 847
            P  + LPEC+ +DAVS+  +P+  S IWL+G++H A+  VQ LV+  I  I+P+VVM+ELDA+R  +LPPG   +  + LW                                   +    V EI TA REA AC ARVLLGDR  E + R   +A+RAD
Sbjct:   83 PANDQLPECLQSDAVSHIRNPSTGSEIWLLGIIHQAEPYVQ-LVQSVIREIKPQVVMLELDAERTFLLPPGTPYQGEDKLWWWKPAKAKGRRPGAVSNRKKAKPRKTTRNQRNFYQDEHVGVSEIWTAGREAQACRARVLLGDRSNEVSKRREREAERAD 241

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BLAST of mRNA_E-siliculosus-1a_F_contig108.558.1 vs. uniprot
Match: A0A6H5KTH2_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KTH2_9PHAE)

HSP 1 Score: 88.2 bits (217), Expect = 1.800e-16
Identity = 71/225 (31.56%), Postives = 99/225 (44.00%), Query Frame = 2

Query:  536 MVELDADRICVLPPGEAMETRNGLWXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--ESVSPVI-------------------EIQTAVREAGACGARVLLGDRDYETTGRLLEKAKRADM---------ASAKERKEFNDLTTSFDCEESTRAITRKECAQMKERAPKVFKVMCTQRDQVMAKNLMKLRGEQTTVAVIGMAHLDGVEKVLKGHGWQRRR 1120
            MVE+D  RI +LPPGEA +  +GLW                                     E+ +  +                   E   A R+A ACGARVLLGDRD++ T R +  A RAD          +SA ++            E ++ A+ RK     K   P+ F V+ T+RD+VMA NL+K+   Q TVAV+G  H  G+  +LK +GW+ RR
Sbjct:    1 MVEIDPCRIKMLPPGEATKDGDGLWWWDAVQEAGPATAVSSGDRDKDEVQAANTSRTPGDGLETATNAVARTRRRAKNDMNTDGMEMSEFYAAARQAVACGARVLLGDRDFQETTRRVSDADRADQEEAMSSLGDSSAGKKNTVEPRIKRRVLEGTSPALWRKLRDLEKTWKPRKFAVLVTERDEVMASNLLKVEEGQGTVAVVGAHHTIGIGGILKANGWKTRR 225

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BLAST of mRNA_E-siliculosus-1a_F_contig108.558.1 vs. uniprot
Match: D7G9B8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G9B8_ECTSI)

HSP 1 Score: 73.9 bits (180), Expect = 2.460e-12
Identity = 37/71 (52.11%), Postives = 51/71 (71.83%), Query Frame = 2

Query:  368 PTQETLPECISNDAVSYWVHPAKESHIWLVGVVHGAKSGVQQLVEEAIGGIRPEVVMVELDADRICVLPPG 580
            P  E LPEC+ +DAVS+  +P   S IWL+G++H A+  VQ LV+  I  I+P+VVM+ELDA+R  +LPPG
Sbjct:   29 PANERLPECLQSDAVSHIRNPTTGSEIWLLGIIHQAEPYVQ-LVQSVIREIKPQVVMLELDAERAFLLPPG 98

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BLAST of mRNA_E-siliculosus-1a_F_contig108.558.1 vs. uniprot
Match: L1K338_GUITC (Uncharacterized protein n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1K338_GUITC)

HSP 1 Score: 76.3 bits (186), Expect = 1.010e-11
Identity = 70/248 (28.23%), Postives = 115/248 (46.37%), Query Frame = 2

Query:  401 NDAVSYWVHPAKESHIWLVGVVHGAKSGVQQLVEEAIGGIRPEVVMVELDADR---ICVLPPGEAMETRNGLWXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXESVSPVIEIQTAVREAGACGARVLLGDRDYETT-GRLLEKAKRAD----MASAKERKEFNDLTTSFDCEESTRAITRKECAQMKER-----APKVFKVMCTQRDQVMAKNLMKLRGEQTTVAVIGMAHLDGVEKVLKGHG 1105
            N  V+Y  HP  +  ++LVG VH +K   + +V E I  +RP+ VMVEL   R   I  +  G+   T + +                                    ++ +   E+  A+R A   GA+V+LGDRD +TT  RL E+   +D    +++       +  +T F  ++S + ITR +  +M +R     +  +   +  +RD++MA+ L +    Q  VAV+GMAH+DG+EK  K  G
Sbjct:   87 NGHVAYLRHPRLQQEVYLVGSVHISKKSAE-IVNEVILAVRPQAVMVELCEARKRAIVSIDQGQQTSTLDTI-------------LRMAGISRQQASAMVGDKILEFIDAYTRGNEMLVAMRAAEQVGAKVILGDRDQQTTLRRLKEEFNLSDVLKLLSTPMSPSSQSIFSTPFAKQKSEKEITRDDARRMLQRLRDSCSSGMISALVDERDEIMAQTLARCNF-QRVVAVVGMAHMDGIEKRYKDEG 319

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BLAST of mRNA_E-siliculosus-1a_F_contig108.558.1 vs. uniprot
Match: A0A4Y7K1D1_PAPSO (Uncharacterized protein n=2 Tax=Papaver somniferum TaxID=3469 RepID=A0A4Y7K1D1_PAPSO)

HSP 1 Score: 69.7 bits (169), Expect = 1.080e-9
Identity = 55/219 (25.11%), Postives = 91/219 (41.55%), Query Frame = 2

Query:  440 SHIWLVGVVHGAKSGVQQLVEEAIGGIRPEVVMVELDADRICVLPPGEAMETRNGLWXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXESVSPVIEIQTAVREAGACGARVLLGDRDYETTGRLLEKAKRADMASAKERKEFNDLTTSFDCEESTRAITRKECAQMKERAPKVFKVMCTQRDQVMAKNLMKLRGEQTTVAVIGMAHLDGVEKVLK 1096
            + I+L+G +HG+    + +V+  I  ++P +V VEL   R+  +      +  +  W                                     + P +E + A+ E+   GA     D+D   T   L K    D+      +    + T F  E+ TR+  R+   + K+R P + KVM   RD  M  NL   +G+   VAV+GMAH+DG+E + K
Sbjct:   56 AQIYLIGTLHGSNQSAE-IVKTVIENVKPGIVAVELCEKRVGAM---NKQQPDDDTWYKLFRKSMRAPGGLSMKIYKFMLSCRRRRLNAY---GIIPALEFKVAMEESARVGASCFYIDQDINVTHEQLSKVPSFDLLWKAYHESRLSVHTEFADEKHTRSSVRESSGKQKKRCPDIAKVMIEDRDNFMFTNLRNFQGK--VVAVVGMAHMDGIELLWK 265

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BLAST of mRNA_E-siliculosus-1a_F_contig108.558.1 vs. uniprot
Match: A0A6V2GKS8_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6V2GKS8_9STRA)

HSP 1 Score: 70.5 bits (171), Expect = 1.650e-9
Identity = 52/171 (30.41%), Postives = 86/171 (50.29%), Query Frame = 2

Query:  716 ESVSPVIEIQTAVREAGACGARVLLGDRDYETTGRLLEKA------KRADMASAKERKEFNDLTTSFDCEEST------RAITRKECAQ-----------------MKERAPKVFKVMCTQRDQVMAKNLMKLRGEQTTVAVIGMAHLDGVEKVLKGHGWQRRRA*ANQPQ 1141
            E  +P  E   AV+E  A G++++LGDRD + T R L +A      K+   + +   K   +L  S     ST       A+ ++  A+                 +++ AP++++ M  +RD+ MAK L K+    +TVAV+G+AH+DGVE+ L G+GW   +A    P+
Sbjct:  287 EGFNPGEEFVVAVKEGLAVGSQIVLGDRDVDVTLRRLTEALSKTDLKKLTSSDSDLEKSMQELLPSSSSGSSTGKPVDPTAVDKESLARYVEVVKAKDNVRLIMKTLQDAAPELYQAMVAERDEYMAKGLNKIDMFPSTVAVMGIAHVDGVERYLGGNGWTNIKASGCMPK 457

The following BLAST results are available for this feature:

BLAST of mRNA_E-siliculosus-1a_F_contig108.558.1 vs. uniprot

BLAST of mRNA_E-siliculosus-1a_F_contig108.558.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
D7FHB5_ECTSI	7.720e-180	79.94	Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2...	[more]
A0A6H5K4M4_9PHAE	1.730e-33	31.68	Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2...	[more]
D7FHB7_ECTSI	7.470e-31	34.23	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]
A0A6H5KLL9_9PHAE	2.420e-30	31.08	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5LN04_9PHAE	1.490e-19	38.75	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5KTH2_9PHAE	1.800e-16	31.56	Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2...	[more]
D7G9B8_ECTSI	2.460e-12	52.11	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]
L1K338_GUITC	1.010e-11	28.23	Uncharacterized protein n=1 Tax=Guillardia theta (...	[more]
A0A4Y7K1D1_PAPSO	1.080e-9	25.11	Uncharacterized protein n=2 Tax=Papaver somniferum...	[more]
A0A6V2GKS8_9STRA	1.650e-9	30.41	Hypothetical protein n=1 Tax=Ditylum brightwellii ...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
E-siliculosus-1a_F_contig108	contig	E-siliculosus-1a_F_contig108:44250..50874 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90	2022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female	2021-02-24

Properties


Property Name	Value
Start	1
Stop	1
Cds size	1080
Model size	1231
Exons	9
Ec32 ortholog	Ec-03_004070.1
Ec32 ortholog description	expressed unknown protein
Hectar predicted targeting category	signal peptide
BRITE	ko00000,ko00001,ko00002,ko01000
Best eggNOG OG	NA\|NA\|NA
Best tax level	Eukaryota
COG Functional cat.	KLT
EC	1.11.1.6
EggNOG OGs	COG1916@1,KOG2860@2759
EggNOG free text desc.	TraB family
KEGG Module	M00532
KEGG Pathway	ko00380,ko00630,ko01110,ko01130,ko01200,ko04011,ko04016,ko04068,ko04146,ko04211,ko04212,ko04213,ko05014,map00380,map00630,map01110,map01130,map01200,map04011,map04016,map04068,map04146,map04211,map04212,map04213,map05014
KEGG Reaction	R00009,R00602,R02670
KEGG ko	ko:K03781
KEGG rclass	RC00034,RC00767,RC02141,RC02755
Seed eggNOG ortholog	2880.D7FHB1
Seed ortholog evalue	1.4e-25
Seed ortholog score	124.0
Taxonomic scope	Eukaryota

Relationships

The following UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622927581.001679-UTR-E-siliculosus-1a_F_contig108:44249..44295	1622927581.001679-UTR-E-siliculosus-1a_F_contig108:44249..44295	Ectocarpus siliculosus Ec863f_EcPH12_90f female	UTR	E-siliculosus-1a_F_contig108 44250..44295 +
1696318596.0382602-UTR-E-siliculosus-1a_F_contig108:44249..44295	1696318596.0382602-UTR-E-siliculosus-1a_F_contig108:44249..44295	Ectocarpus siliculosus Ec863f_EcPH12_90f female	UTR	E-siliculosus-1a_F_contig108 44250..44295 +
1622927581.1388695-UTR-E-siliculosus-1a_F_contig108:50769..50874	1622927581.1388695-UTR-E-siliculosus-1a_F_contig108:50769..50874	Ectocarpus siliculosus Ec863f_EcPH12_90f female	UTR	E-siliculosus-1a_F_contig108 50770..50874 +
1696318596.1544838-UTR-E-siliculosus-1a_F_contig108:50769..50874	1696318596.1544838-UTR-E-siliculosus-1a_F_contig108:50769..50874	Ectocarpus siliculosus Ec863f_EcPH12_90f female	UTR	E-siliculosus-1a_F_contig108 50770..50874 +

The following CDS feature(s) are a part of this mRNA:

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_E-siliculosus-1a_F_contig108.558.1	prot_E-siliculosus-1a_F_contig108.558.1	Ectocarpus siliculosus Ec863f_EcPH12_90f female	polypeptide	E-siliculosus-1a_F_contig108 44296..50769 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at E-siliculosus-1a_F_contig108:44250..50874+
coding sequence from alignment at E-siliculosus-1a_F_contig108:44250..50874+

protein sequence of mRNA_E-siliculosus-1a_F_contig108.558.1

>prot_E-siliculosus-1a_F_contig108.558.1 ID=prot_E-siliculosus-1a_F_contig108.558.1|Name=mRNA_E-siliculosus-1a_F_contig108.558.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=360bp
MMGIRSLSLVLPLACSPAGSFVLPATRLRPVAPLRQDCDVYYSRGAARSG
TDAAVKGRERFMSMELGFDPLKRRCSCQPVGAHRSRSLPLRSQQAQASAE
ETTVSADPTQETLPECISNDAVSYWVHPAKESHIWLVGVVHGAKSGVQQL
VEEAIGGIRPEVVMVELDADRICVLPPGEAMETRNGLWWWAPEEEPEGSA
DVYEDDDEDGEYAEDDEDVDDEEESVSPVIEIQTAVREAGACGARVLLGD
RDYETTGRLLEKAKRADMASAKERKEFNDLTTSFDCEESTRAITRKECAQ
MKERAPKVFKVMCTQRDQVMAKNLMKLRGEQTTVAVIGMAHLDGVEKVLK
GHGWQRRRA*

mRNA from alignment at E-siliculosus-1a_F_contig108:44250..50874+

Legend: UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_E-siliculosus-1a_F_contig108.558.1 ID=mRNA_E-siliculosus-1a_F_contig108.558.1|Name=mRNA_E-siliculosus-1a_F_contig108.558.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=6625bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig108:44250..50874+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
CTCGTGTCTGGTATACTTGAATCACTCACGACACCCTCCTGGCTTGATGA
TGGGGATTCGATCACTGTCTCTCGTGCTTCCTCTGGCATGTTCGCCAGCG
GGATCGTTTGTCCTGCCTGCGACAAGGTTGCGGCCCGTAGCGCCGCTGCG
ACAAGATTGTGACGTTTACTACAGCAGAGGTGCGGCCAGGAGCGGAACTG
ACGCTGCGGTCAAGGGCAGGGAGCGTTTCATGTCAATGGAGCTGGGGTTC
GACCCTCTCAAACGTCGGTGAGAAAGCAGTCACTGTGTTCTGGTTGAGGA
AGGGGGGCGAGTGATTTGTCCTCATCAATAAATCGCCAGAGCTGTCGCAC
AAGTCAACCTTCCCAGGTCTTTGTTAAACTTCAAACCGTGTTGTCCCTAC
TCGTAAATCACCGCGATGTGCCCTGCTCAACGATTAAAGGTCGCGTCGGC
CGTTGATGTCTCTGGGAGCATGCGGTTTTTGTTTGACGTGTGCTCTCGAC
CACGGCCGTCCATGTCCAATCCCTATCACGATTGCATGTCGGCGGCAACA
GTGCCGATTTGCTCTTTGCTGTGCAACCAGCAACAGCAACATGTACAACA
TCAACAACGCACACACCCTCGCATTTTCGCCAGCGTTGCACCCTCTTCTC
ACAGCTTATTCTCAGCCCCAGTTCCCTGGGCACCTCGTTTTCAAACCCGC
GGTGCAAAACAAATATCTCAGGTTTACACGACTGCCGAGTACGGAATGAA
CTTGCCAGACGCACCTTTGCGGATGTACTGCTGTGGCCACCGCGACCCAC
CGCAACCCGAACCCCAACATATTGCCCTGGCCTTATGACCCGCTCGAGGG
CCCACGAGTGCCTACTGCTGTCGTGCGTGCGTTGTTAGCTAATCAGAGTG
TAATTTTGCGTGTGAAAATCGCTGTATTTTTGTGTTGCAGTTTGGGACGC
TCGAGTGGTACAGCATGGCGTTTCACGTCGATCGTGTTCAACCCTCGACC
TCAACTGTTGGTCGCTGTTTTTGGCCGGTTCCGCTGTTTTCTGCAGATGT
TCATGCCAACCCGTGGGCGCACACCGCTCCAGGTCTCTACCCCTGAGGAG
CCAGCAGGCGCAGGCATCAGCGGAGGAAACCACTGTGTCGGCGGATCCAA
CGCAAGAGACGTTACCCGAGTGCATATCGAACGATGCCGTGTCCTACTGG
GTACACCCGGCAAAGGAATCACACATCTGGCTTGTGGGAGTTGTCCACGG
CGCCAAGTCCGGGGTGCAGGTATGAGGAAGCCACTGCTGCAGTTGTTGGT
GGCCATGTGTTGTGCCTGGGAACTTCTTTTTTTTTCGGTGTGCTCCTTGT
ATATTTGCAGTCCACCTGTGCTTTTGCATCGCCGGCGTTGATAGATACTT
AGATCACCAGAGGCTTTGCCTGTCGCGTGTTCCGCGTTGCCGCGCTCCGA
CACCATTCCCGTTGCCATTCGTCCCTATTGCCCTAACAGCAAGGGTTCCT
GCCGAAATTGTGTACATCTTCCGAGCGTTGATGAGATTTCGGCGGGTACG
GTTGGAGGGCTGGAGACACCACAGCAAACGCATTTTGGCGCAACCAATGG
GGCTGCACGGGGTGGTGCCGATTTTGTCCTAACCGCTGGTTGTAATGCTG
TACATCTCCTGTGTAGTTCGCACGTTTCGATTCTGCAGCAGCCCAACTCG
TTGGAGGACGCCCCAGGACTTTGTTATTTCGTCTGGGAACAATGTCTCTT
AGATACTACCTCCGTCCAGTGCGGGTTCTAAGAATACAATGTTCTTGGGT
CACCGGTGTCTCCGATACAGACTGTCATGTCCCTCTCTCTGCATGTGGGT
GCCTTCTCTCCGCCGAGCAGTTGGTGGAGGAAGCGATCGGAGGGATCAGG
CCGGAAGTTGTCATGGTGGAGCTAGATGCGGATCGCATTTGTGTGCTGCC
CCCAGGGGAGGCAATGGAGGTGGGTGCGGTTCCGAACTTTGGTTGTTAGG
ACCGTCGTATTTGTTGACCTTCAGGCACAAACAGAAGCGAGCACGTTGAA
CGCCGTAAGCGACGACTGGCTTGCTGGATCCCTCAGCCCCAGCCCCCAGA
GAGCCTTTGTGTTGAGTCCAGGGACAAACGGCTTGGGTTCCTGTAGGACG
GGAGTTTGTTTCGATCCTGCAGTAGCTATGCGATCCCGCCCGCCCGCCCG
CCCCATGTGCCGTTCGTAGCGCCTTTTCGGCCTCGACGCCATTGAGTGCA
TGCCTTACCTGTTTGTTGGAATAGAAAGGGGAGTAATCGCAGTATTGCTC
GGGGAAACACAGGTAGCTTCCGCTGACGCCATGAAGTCACTGCAAATCTA
TCCCAGACCCATCTGTGGAGATTAACCAAGTGGGCGTGCCGTAAGTGCGA
AAATAATAAGCTTTTAAGCGGCCGTGGTTTCCGCCTTCTGACGTGCTCCT
GTCGCGCAGACCCGAAACGGCCTTTGGTGGTGGGCACCAGAAGAAGAACC
GGTAAGGATGAGGCTTTTCTTGTAGCGTGATAATGTACCTGTGTTGCTCT
GTGTGTTGAAAATCAGAAGCTTAGGGTCTGCGAAGACTGTAGCTAAGAAC
AGTTCCCTGGTGGTTTTTGCTGTGCTAGATTGCTTGGTCTGTTGTTTTCG
GCGAGCGTCAGATCTACGAAAAAGAGGTTCTCACTACAAACAAGATAATA
TGTTGGTGTGGTCTATCTGTTCAAGTGGCCTGTGCTACAGCCGTAGCAGC
AGTGAGCAGGCAAGGGAACAGAAGCTTGGGGGGGTGCGCTGTAGACGTGA
GATTACAACCACATGGAGTTTGGTTCAGAGAGGAATTAGAAAAAGATGTG
GTACAATTGGTTTTATTGTGGAGCTGGGCAGGAAACAGATTGAGCTCCAG
TGTGGGGCGTGCGCTCTGCCTGGTCACCCTTTTTGTCGATTACCGACGAA
ACTACGAAGAACCTTAGTACCAGTCCGGAACCGTACCGGAATCGCACCGG
GAACCAAATACCGTTCTATTCGACCAAAAGCAATGTTCCGGAAACGTTCC
GGGGACCTTTTTATTGGTCTTATTCTGGATTTTTCCTGAGAAAGTTCCTG
AGAACCGTTCTACGAAAATATGCTCGATCTAGGAAACATTCTACGAACCG
TTACGGAATCTATCGCATCCGTTCCAGATACATTTCCTGAAATTTTGTTC
CTTAAATAGCTTGTCATCCCGCCTTTAGTGTACCATTCACGTATACTGAA
AAGCTCCGGCCGAACATGCTAGTTTTCAGGCATCTACAGGACGACTTATG
GGTAGGGTTGGTGAGAGTTAGCTTCTTCAGGGTTGGACTTAGTTGGCTCA
ACTACGACATCTTTCCGTGTGCGTCAGTTGCAGACTCCGGGCTCCCGCCC
CTGCCGCGTGACTCATTCTTGTCTCAAGTGGAACGCGTGTCGTTTCCTTC
GTTGGTGAACAAGGTGTGCCTGGCATGACGCAAGAAAAAAAAAAAGGAGC
TTGGGACTAGCACGCCGACGATATTCGTCGGGTTGCTTTTGAAACAATTC
CTTAAATATCTTGTTGTTCCGCCTTTAGTGTACCTTGAAACCGGTATTAC
TTTGTGCTACCGAATCGCTCATGATGTATGCGACGTCGTATACTGTGTTT
TATTCATGAGAGTACTTATGCATAAAACAGCAGGCTTATCAATTCATGCT
GATATGTTTTAAATTGTGAAGTGTTTTTCGTGTGGGGCATGTCTGTGCTT
TCAGCTTTTTCTGGCCTTCCCTAAGAGTGAAAGAACGCCAAGAAGACCCA
TCCGGGTGTCTCGACAACGACTGACGGTTGTTAGAATGTTAGAATCACGA
TGGCCGTAGAATAGGAGTGAGAAGCAGAGAATGTAGCAAATCTTCGTCAA
TGAGTAGCTCTAGTACGGGGCAGGGGCAAACGTACGGAATCGTGTTGTGT
TTGGTGGATTGGTTCATGCAGTGGATGTACTGCCTCCTGTCCCGATTGCA
TCATTGCGGCTGCACTTGCCGTCGTACGCCGCGAGTAAATCGCCCCGGAA
CCAACGCCGGCACATGCGTGGAGTCTTGATTGGCTTGAAAACCATCGTGT
TGTTGTAAGTATGCAGACGGCCCAGAGTCTTACTTTCGACTGCTGGAACG
CGCCCGTGTTGAACAGGAGGGATCAGCTGACGTATATGAGGATGACGATG
AAGACGGAGAATATGCGGAGGACGACGAGGACGTGGATGACGGTGAGTGG
GAGGTGCACTACGCAACACTTTGGGCGTAGGTAACCCTACGGCGTCATTT
GTTCGAGGACCTGTCCACAAACACGACGAATGCTGTGGTCCGTAGGGTTG
TAAGTATGAATGAGCTGCGATAAAGTTGCCAAACAATCACGGTTGATGTG
CTCTAATGTGCTTGATCATATACTGCCGCCCTCGGCCCCCGTAATAATCT
GAGCACGGCGAATGCCTTTATCGGCGGTGCCTCTCGAAATTATGTGTACT
CGTGAGGTGTGATGGCGATACTGGTGTTAACTGCGACACCCGCTGTTTGT
TTCCCCCTTCGGCTCACATTCCTTCAGAGGAAGAATCAGTTTCACCCGTG
ATTGAAATCCAGACTGCAGTGCGCGAAGCGGGAGCGTGTGGTGCGAGAGT
GCTCCTCGGAGACAGGGACTACGAGGTGCGGAACCTTGTGGTTTGATGGC
GCGTACTTCTGGACGTACGGGTTCGGTTCCTGTTCAGCGTGATCCGCAAC
AGACTGCGTGCGGCGGAAACTCCGCCGTCCTTTACGTTTACGGCTTCCTT
GCGTGGGTTGGCTATGTCGTGTTCGCTTGCTGCCATCCGTTCATTTGCGG
GGGGGGGGTTACACCTCAGTTTTTTACCCCTGTCCACCATCCCCCATTTG
TTGCCCATGGACGTTTTCGCTATAGACGACGGGTCGTCTACTGGAGAAAG
CGAAACGAGCGGACATGGCTAGCGCAAAGGAGAGGAAAGAGTTCAATGAT
CTCACCACCAGCTTTGACTGCGAGGTGAGCAAGCCCTCTGTGTAGAACGA
CGGACTCTCGTACCGGGCGGTTGTTTCTCAAGATTTCTTGCACCGCACTC
CCCCTCTGCTGTATTCCGACGCGCACCCAGGAATGAATTATTGTTGCCAA
CGTTTGCCGACCTGGCGTGCACAACCAACCCCCCAATAGGTAGACCTCCG
CAGCTCCGTACCAAGTGAGACACACTATGATTGCTTTAGACTAAGATGGA
GGTGTGTTGCTAATGAGAAGGTGCCCCCTCCAAGCTGTTGTGAAGTGTTT
GGCCTTTCATTGATGCGGATATGTATTTTTGAAGTGTAAGACCCATCTTG
CCGGTGCGAATAGCCAAGGTTCCCTGTCTCGCTGCATCCGGACGGACGTT
CCATTTGGTTCAGGTTTGTGTGGCACACGAGACTATGATGTTTGCTTACT
CCAGTATTTGTTTTTTTTCTCACGCTCTTGCACAGCACTTTGCGCTCACG
TCAGATTGCCTTCGGCTAATCACCCCGGACAGGAATCAACACGGGCGATC
ACACGCAAGGAGTGCGCGCAGATGAAGGAACGAGCGCCCAAAGTATTCAA
GGTCATGTGCACTCAGCGAGATCAGGTGCCTGTACATCCCCTGCCCTTTG
TCTCGTCCTCTTGTGCATTAAAATTCGAGGCCACGTTTCATTCGTCAGAA
GCATGAGGGAATGTGTTGCTGAAGCCTTCTCATATTTTGCGGGAAGACTG
TTCTGTGTGCCATCAACTACTGCTTTCCGGTTGACCGAGGCCACATCGCA
CATGGTACGTTGAAACTGCGAGCGACTGAAATGAATTGGATGACTGTGAC
TACATACAGTACCCGCTTTCACATCTCTATTTGCGAAGCTCATTGCGCTT
CGAAGGCAAACTCAGGCCTACCGTTCTGATAACACGCGCGCTCTAAGTGC
GGCCCGCCACGTGTGCTTCTTTGATGCCCTCTCATTGCGTATTTTGGTAG
ATTTTGCCTCTGCGCTACCAATGCTCCACCAGTCTGAAACCTTGCACACG
GGTTTGTTTTCCTCTGGGGTGATGAATGTCCGGGAAACAATCGTTGTGCC
GTTGTTGCGTGCGGTTCGCCTCGCTTCGCCTCAATTAGACACTAGCGAAA
ACAGATGAAGTTTCCGCGCATGCATTTCGTTCTAAAAGTCCCTGCCGTGA
GGTAGGACGCCCGTGACAATCGTACCGGCTCACACTCGAGCTCTTTACGA
TGCTGCCGATCCCTTCGTATGCTGATGTAGGCGATCAGCTCAAGGTAGTA
TCATTTTTTCACTCTGAAACCGATCCCGTCAATGTCGCTCGCAATCGTTA
CTCTGCGAGTAAATGTGTTGAATGTCTTTGTCTTGCTTCCGCAGGTGATG
GCGAAGAACTTGATGAAGCTGCGGGGAGAGCAGACAACGGTAGCGGTGAT
CGGAATGGCACACCTTGATGGCGTCGAGAAAGTGTTGAAGGGTCACGGCT
GGCAGCGTAGACGGGCGTAAGCGAATCAACCCCAAAAAATATCAGCTGTG
CACCCAGTTCTCATACTCCTGTAGGGGCCTTGTAGCATGGTGCGAGCTAG
TGGTGTTCTCAAGGAACTGTGGAAC

Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig108:44250..50874+

>mRNA_E-siliculosus-1a_F_contig108.558.1 ID=mRNA_E-siliculosus-1a_F_contig108.558.1|Name=mRNA_E-siliculosus-1a_F_contig108.558.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=2160bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig108:44250..50874+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGATGGGGATTCGATCACTGTCTCTCGTGCTTCCTCTGGCATGTTCGCC
AGCGGGATCGTTTGTCCTGCCTGCGACAAGGTTGCGGCCCGTAGCGCCGC
TGCGACAAGATTGTGACGTTTACTACAGCAGAGGTGCGGCCAGGAGCGGA
ACTGACGCTGCGGTCAAGGGCAGGGAGCGTTTCATGTCAATGGAGCTGGG
GTTCGACCCTCTCAAACGTCGATGATGGGGATTCGATCACTGTCTCTCGT
GCTTCCTCTGGCATGTTCGCCAGCGGGATCGTTTGTCCTGCCTGCGACAA
GGTTGCGGCCCGTAGCGCCGCTGCGACAAGATTGTGACGTTTACTACAGC
AGAGGTGCGGCCAGGAGCGGAACTGACGCTGCGGTCAAGGGCAGGGAGCG
TTTCATGTCAATGGAGCTGGGGTTCGACCCTCTCAAACGTCGATGTTCAT
GCCAACCCGTGGGCGCACACCGCTCCAGGTCTCTACCCCTGAGGAGCCAG
CAGGCGCAGGCATCAGCGGAGGAAACCACTGTGTCGGCGGATCCAACGCA
AGAGACGTTACCCGAGTGCATATCGAACGATGCCGTGTCCTACTGGGTAC
ACCCGGCAAAGGAATCACACATCTGGCTTGTGGGAGTTGTCCACGGCGCC
AAGTCCGGGGTGCAGATGTTCATGCCAACCCGTGGGCGCACACCGCTCCA
GGTCTCTACCCCTGAGGAGCCAGCAGGCGCAGGCATCAGCGGAGGAAACC
ACTGTGTCGGCGGATCCAACGCAAGAGACGTTACCCGAGTGCATATCGAA
CGATGCCGTGTCCTACTGGGTACACCCGGCAAAGGAATCACACATCTGGC
TTGTGGGAGTTGTCCACGGCGCCAAGTCCGGGGTGCAGCAGTTGGTGGAG
GAAGCGATCGGAGGGATCAGGCCGGAAGTTGTCATGGTGGAGCTAGATGC
GGATCGCATTTGTGTGCTGCCCCCAGGGGAGGCAATGGAGCAGTTGGTGG
AGGAAGCGATCGGAGGGATCAGGCCGGAAGTTGTCATGGTGGAGCTAGAT
GCGGATCGCATTTGTGTGCTGCCCCCAGGGGAGGCAATGGAGACCCGAAA
CGGCCTTTGGTGGTGGGCACCAGAAGAAGAACCGACCCGAAACGGCCTTT
GGTGGTGGGCACCAGAAGAAGAACCGGAGGGATCAGCTGACGTATATGAG
GATGACGATGAAGACGGAGAATATGCGGAGGACGACGAGGACGTGGATGA
CGGAGGGATCAGCTGACGTATATGAGGATGACGATGAAGACGGAGAATAT
GCGGAGGACGACGAGGACGTGGATGACGAGGAAGAATCAGTTTCACCCGT
GATTGAAATCCAGACTGCAGTGCGCGAAGCGGGAGCGTGTGGTGCGAGAG
TGCTCCTCGGAGACAGGGACTACGAGAGGAAGAATCAGTTTCACCCGTGA
TTGAAATCCAGACTGCAGTGCGCGAAGCGGGAGCGTGTGGTGCGAGAGTG
CTCCTCGGAGACAGGGACTACGAGACGACGGGTCGTCTACTGGAGAAAGC
GAAACGAGCGGACATGGCTAGCGCAAAGGAGAGGAAAGAGTTCAATGATC
TCACCACCAGCTTTGACTGCGAGACGACGGGTCGTCTACTGGAGAAAGCG
AAACGAGCGGACATGGCTAGCGCAAAGGAGAGGAAAGAGTTCAATGATCT
CACCACCAGCTTTGACTGCGAGGAATCAACACGGGCGATCACACGCAAGG
AGTGCGCGCAGATGAAGGAACGAGCGCCCAAAGTATTCAAGGTCATGTGC
ACTCAGCGAGATCAGGAATCAACACGGGCGATCACACGCAAGGAGTGCGC
GCAGATGAAGGAACGAGCGCCCAAAGTATTCAAGGTCATGTGCACTCAGC
GAGATCAGGTGATGGCGAAGAACTTGATGAAGCTGCGGGGAGAGCAGACA
ACGGTAGCGGTGATCGGAATGGCACACCTTGATGGCGTCGAGAAAGTGTT
GAAGGGTCACGGCTGGCAGCGTAGACGGGCGTAAGTGATGGCGAAGAACT
TGATGAAGCTGCGGGGAGAGCAGACAACGGTAGCGGTGATCGGAATGGCA
CACCTTGATGGCGTCGAGAAAGTGTTGAAGGGTCACGGCTGGCAGCGTAG
ACGGGCGTAA