mRNA_E-siliculosus-1a_F_contig108.555.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig108.555.1
Unique NamemRNA_E-siliculosus-1a_F_contig108.555.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig108.555.1 vs. uniprot
Match: D7FHB0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHB0_ECTSI)

HSP 1 Score: 370 bits (950), Expect = 9.760e-117
Identity = 191/213 (89.67%), Postives = 198/213 (92.96%), Query Frame = 2 
Query:  116 VVEIGDWVPREFQCEDEEALSKSEEPQEIVRSPPRGGRDGGLKGEQKPPNAEPERTKVGKNENIGGGHGEEKTSGEKPRQMYRKIRLRTSVSSPFGASHNDALQGHTLSESEDEVTYTETDCISGLPMFRGNLVAKTTFRVTRSEDHPQNSVRVKVTVVVRDVNLIRGMGWLMSKAVQKSVRDGGKKQAANTLNAMVLEAKPEPELDYSGSQA 754
            VVEIGDWVP EFQCEDEE LSKSEE QEIV SPPRGG+ GGLKGEQKPPNAEP+R +VGKN NIGGGHGEEKTSGEKPRQ+YRKIRLRTSVSSPFG SHNDALQGHTLSESEDEVTYTETDCIS LPMFRGNLV KTTFRVTRSED P+NSVRVKVTVVVRDV LIRGMGWLMSKAVQKSVRDGGKKQAANT+NAMVLEAKP+ EL  SGSQA
Sbjct: 1003 VVEIGDWVPWEFQCEDEEVLSKSEELQEIVPSPPRGGKYGGLKGEQKPPNAEPKRPEVGKNNNIGGGHGEEKTSGEKPRQIYRKIRLRTSVSSPFGTSHNDALQGHTLSESEDEVTYTETDCISKLPMFRGNLVVKTTFRVTRSEDDPENSVRVKVTVVVRDVKLIRGMGWLMSKAVQKSVRDGGKKQAANTMNAMVLEAKPDRELGGSGSQA 1215
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BLAST of mRNA_E-siliculosus-1a_F_contig108.555.1 vs. uniprot
Match: D7FHA9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHA9_ECTSI)

HSP 1 Score: 181 bits (459), Expect = 3.340e-52
Identity = 124/285 (43.51%), Postives = 147/285 (51.58%), Query Frame = 2 
Query:   83 TRPSTALSKQEVVEIGDWVPREFQCEDEEALSKSEEPQEIVRSPPR--------GGRDGGLKGE-------------------------------------QKPPNAEPERTKVGKNENIGGGHG-----------------------EEKTSGEKPRQMYRKIRLRTSVSSPFGASHNDALQGHTLSESEDEVTYTETDCISGLPMFRGNLVAKTTFRVTRSEDHPQNSVRVKVTVVVRDVNLIRGMGWLMSKAVQKSVRDGGKKQAANTLNAMVLEAKPEPEL 733
            TR  T LSKQ+V+E+GDWV  EFQ EDEEA   S   +E+V  PP         G   GGL+G                                        P ++ P+    G    +   H                               +P+QMYRK+RL+ +VSSP G+S N+  QGHTL E EDEVTYTETDCISGLPMFRGNLV KTTFRVTRSE  P+NSVRVKV VVV DV L R + WL SK V+ ++RD G KQAA TL  MV EAK +  L
Sbjct:   39 TRAETKLSKQQVMELGDWVVWEFQNEDEEAPRSSRNSEEVVPYPPLDRIRPVCLGLEGGGLQGRPGSHPSATTGQGAQQTAVVADTKMQMVRNLRRIYAAASSPTHSPPQPDGAGAQTAVSVAHNMFSNVVARRPGPFLRPHRHQXXXXXXXXXSEPQQMYRKVRLKYAVSSPIGSSQNEGAQGHTLREGEDEVTYTETDCISGLPMFRGNLVVKTTFRVTRSEHDPENSVRVKVCVVVGDVKLSRAIAWL-SKGVKYAIRDSGTKQAAKTLQDMV-EAKSKAWL 321
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig108.555.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FHB0_ECTSI9.760e-11789.67Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FHA9_ECTSI3.340e-5243.51Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig108contigE-siliculosus-1a_F_contig108:5551..8248 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size402
Model size757
Exons5
Ec32 orthologEc-03_004130.1
Ec32 ortholog descriptionLipid transfer domain protein
Hectar predicted targeting categoryother localisation
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig108.555.1prot_E-siliculosus-1a_F_contig108.555.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig108 5551..7134 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927580.3554344-CDS-E-siliculosus-1a_F_contig108:5550..57271622927580.3554344-CDS-E-siliculosus-1a_F_contig108:5550..5727Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig108 5551..5727 -
1696318595.6992807-CDS-E-siliculosus-1a_F_contig108:5550..57271696318595.6992807-CDS-E-siliculosus-1a_F_contig108:5550..5727Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig108 5551..5727 -
1622927580.3707354-CDS-E-siliculosus-1a_F_contig108:6129..62741622927580.3707354-CDS-E-siliculosus-1a_F_contig108:6129..6274Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig108 6130..6274 -
1696318595.7086217-CDS-E-siliculosus-1a_F_contig108:6129..62741696318595.7086217-CDS-E-siliculosus-1a_F_contig108:6129..6274Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig108 6130..6274 -
1622927580.3823004-CDS-E-siliculosus-1a_F_contig108:7054..71341622927580.3823004-CDS-E-siliculosus-1a_F_contig108:7054..7134Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig108 7055..7134 -
1696318595.7188962-CDS-E-siliculosus-1a_F_contig108:7054..71341696318595.7188962-CDS-E-siliculosus-1a_F_contig108:7054..7134Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig108 7055..7134 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927580.3953743-UTR-E-siliculosus-1a_F_contig108:7134..71641622927580.3953743-UTR-E-siliculosus-1a_F_contig108:7134..7164Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig108 7135..7164 -
1696318595.7333274-UTR-E-siliculosus-1a_F_contig108:7134..71641696318595.7333274-UTR-E-siliculosus-1a_F_contig108:7134..7164Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig108 7135..7164 -
1622927580.407555-UTR-E-siliculosus-1a_F_contig108:7536..77461622927580.407555-UTR-E-siliculosus-1a_F_contig108:7536..7746Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig108 7537..7746 -
1696318595.7509887-UTR-E-siliculosus-1a_F_contig108:7536..77461696318595.7509887-UTR-E-siliculosus-1a_F_contig108:7536..7746Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig108 7537..7746 -
1622927580.4286518-UTR-E-siliculosus-1a_F_contig108:8133..82481622927580.4286518-UTR-E-siliculosus-1a_F_contig108:8133..8248Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig108 8134..8248 -
1696318595.7627416-UTR-E-siliculosus-1a_F_contig108:8133..82481696318595.7627416-UTR-E-siliculosus-1a_F_contig108:8133..8248Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig108 8134..8248 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig108.555.1

>prot_E-siliculosus-1a_F_contig108.555.1 ID=prot_E-siliculosus-1a_F_contig108.555.1|Name=mRNA_E-siliculosus-1a_F_contig108.555.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=134bp
MYRKIRLRTSVSSPFGASHNDALQGHTLSESEDEVTYTETDCISGLPMFR
GNLVAKTTFRVTRSEDHPQNSVRVKVTVVVRDVNLIRGMGWLMSKAVQKS
VRDGGKKQAANTLNAMVLEAKPEPELDYSGSQA*
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mRNA from alignment at E-siliculosus-1a_F_contig108:5551..8248-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig108.555.1 ID=mRNA_E-siliculosus-1a_F_contig108.555.1|Name=mRNA_E-siliculosus-1a_F_contig108.555.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=2698bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig108:5551..8248- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
AGCTCGGCGGGTGCTCAGGTGGACACCACTCTGTCCATAACCATCGCGAC
ATTTGCCCGACTTGCACGATAGCAAGTCTTGCACCAGGCCTTCGACGGCT
CTCTCCAAACAGGAGGTGAAAACGATCATTCATGTTGTGGACGCAAGCTC
CATTAGCTCGTGGCGGGGCACGTCTCACGCAATCGTCTACCGTTGTGTTC
TACTGTAGTCTGTTGAGAAGACGGTTCTGAAACCTTCGCACCCTCGCGGT
GAAGAGATTGGTGTTCGTAGTCACAGGTTGCCATTGTGGAATTTCTGACG
CTCAACAGATTATGGTAACCAGACATCCACCCTCGGCCAATTCAGACCCG
TGAAAGGCTTCCGGGCGCGATCTTTTAGTGTCTTGTCGCTCTCACGAGTG
AGAACGCGCTCATGAAGTCGCTCAACCTCGCGGCGGCCAATGAATGACTA
CCAACCAACCAACGTTGATGACCCCTGCGCCCCGTGTATTTATCTCCGGC
AGGTGGTCGAGATCGGGGACTGGGTTCCGAGGGAGTTCCAGTGCGAAGAC
GAGGAGGCACTGTCGAAAAGCGAGGAACCCCAAGAGATTGTGCGGTCGCC
CCCCCGCGGGGGGAGAGATGGAGGGCTTAAGGGAGAACAGAAACCCCCGA
ATGCGGAACCCGAAAGGACAAAAGTGGGGAAAAACGAAAACATCGGCGGC
GGACATGGCGAGGTACTGTATTTGGAGCACGTGCGTGTTTTTGCGAGATA
GGATTTGGCCGTCGTTTTGATGCACACAGGAACACTCAGTAATCATTTTT
TTTCATCAATTGTCGCGAACCGTCGCTATTTCTTTTCAGTGAGCCGGAAA
AAGGTTGTGCCTTGTCAGCGTCTCTTCCTTCGAACCACCTTCCTGCTGCC
GCAGCGCCACGACAGCTTTCCCGCGACACATTGCTTCCACTCATTTCCAG
TTATGTAGTTTACTCTCCCCGCTATGTCACTGAGCGCGTGGTGTTGCCCG
GCAATATTCATTCGTTTTTTTTATGTTTCACGGTGAACTGGACGCTCGCC
GCCCCCGACATTCGCCCAAAATCGTCAAAATCAGGAGAAGACATCGGGAG
AGAAACCTCGCCAGATGTATCGTAAGATCCGCCTGAGAACGTCGGTTTCC
TCTCCGTTCGGGGCTTCCCACAACGACGCTCTTCAAGGACACACGTGAGA
GGCGGTTTTTTCTCAGGTGCCTGCCACCACGTGGAGCATGTCCTACCCGT
AGATATCGAGGCCCCGTTATCGGTCGGTTGAGGTATGCACAGGCTTGTTC
TCACGCTACGGTCATTACACACGACGAAGATAATCCATTCACTACCGTCA
CAGCTTGGCTTTTGGCGCGCGGCAGGCCCGAACATTGTCACTCCGTTCGT
CATCGCAGCACCACAGAATGTCGCAGCACCACAGAATGTTGTTGTGAGCA
CGATGTTCGCAGAGAACATTGTTCTTGAGTCTGCCAACGAACGGAAGAGT
GAAAATGCTCTCGTTGTTATTGTTGTTGCTCTGACAGCGCTCGCCCCCTC
CGGGCTCGTAGGCTGCAACGTGCCACCCGTTTCCGTAACAACAAGTAAAT
CGCTGTCGGACGGTGCTTGTGAGGTGAAACCGCGCTATGTGGTTTTTCTT
CATTTCATATATTTTCATACTTGCCAGGCAATCATCTGACACGATACTGA
GGCATGCCTCAGTTATATACTGTAGGTGAACCGTTTTGGAATCCAACAGA
AGCCAACATGAAGTGTCCGGCACCAGACATCGATCCACACCGGTGAAGAT
TGGCGCCATGTCTTCGCTACGCACGGGGGCACTGGCTCCACACTCTCTCG
TTTTCACCGATGGCCGTGGATTCCACAAAGTATATCGACTGATTACGTCT
CTCATTGCTCTACTGGCTCGCGCCTGGTGTTTGGTTCTATGTATTCCCCC
GTGTCTTGTTTCTTGTTGAATCAGGTTGAGCGAGAGCGAGGACGAGGTGA
CCTACACGGAGACCGACTGCATCTCGGGGCTGCCGATGTTCCGCGGCAAC
CTGGTCGCCAAGACCACCTTCCGAGTAACTCGATCCGAGGACCACCCCCA
AAACTCCGTCCGCGTCAAGGTACGCCTTGTTACGTCGGGGCCCAGAAATA
ATATCTGGGACCCGATCATCATTGTGACACGGTTTTGATGCGTCAGCAGT
TTCTATGAAGTCACGTTATTTGAGGAAGAAGAAACAACCCTCCAAGAGTG
AAATGGACAGGTGGTTCGTGTAACAGATTGCGAAACTATGCTAGGAACCA
GCTGGAACTCCGCCCGTGGGTCGTCCTCTTGGTGTCCATTGAGCTTTGGA
GGGAGAGACAGCGAAAAACAGAGCGGGGGAGATGCTGTGCAACGTCCTTT
TTCGTGTGCCGTCGCCGCGCCGGGAGGTGAAATATGTACGTATATTTCAT
CAACAGCGCAAGCATGTGTGGACACGTCCGTCCGTTTCTTCGTCACCCTA
CATTTCTGTTTCGTGTGTGAGGTGACCGTTGTTGTGCGAGACGTGAACCT
TATCCGAGGGATGGGCTGGCTGATGTCGAAGGCCGTCCAGAAGTCCGTCA
GGGACGGCGGCAAGAAGCAAGCTGCGAACACCCTGAATGCAATGGTGCTG
GAAGCCAAGCCTGAACCTGAACTCGATTATAGTGGAAGCCAAGCCTGA
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig108:5551..8248-

>mRNA_E-siliculosus-1a_F_contig108.555.1 ID=mRNA_E-siliculosus-1a_F_contig108.555.1|Name=mRNA_E-siliculosus-1a_F_contig108.555.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=804bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig108:5551..8248- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGTATCGTAAGATCCGCCTGAGAACGTCGGTTTCCTCTCCGTTCGGGGC
TTCCCACAACGACGCTCTTCAAGGACACACATGTATCGTAAGATCCGCCT
GAGAACGTCGGTTTCCTCTCCGTTCGGGGCTTCCCACAACGACGCTCTTC
AAGGACACACGTTGAGCGAGAGCGAGGACGAGGTGACCTACACGGAGACC
GACTGCATCTCGGGGCTGCCGATGTTCCGCGGCAACCTGGTCGCCAAGAC
CACCTTCCGAGTAACTCGATCCGAGGACCACCCCCAAAACTCCGTCCGCG
TCAAGGTTGAGCGAGAGCGAGGACGAGGTGACCTACACGGAGACCGACTG
CATCTCGGGGCTGCCGATGTTCCGCGGCAACCTGGTCGCCAAGACCACCT
TCCGAGTAACTCGATCCGAGGACCACCCCCAAAACTCCGTCCGCGTCAAG
GTGACCGTTGTTGTGCGAGACGTGAACCTTATCCGAGGGATGGGCTGGCT
GATGTCGAAGGCCGTCCAGAAGTCCGTCAGGGACGGCGGCAAGAAGCAAG
CTGCGAACACCCTGAATGCAATGGTGCTGGAAGCCAAGCCTGAACCTGAA
CTCGATTATAGTGGAAGCCAAGCCTGAGTGACCGTTGTTGTGCGAGACGT
GAACCTTATCCGAGGGATGGGCTGGCTGATGTCGAAGGCCGTCCAGAAGT
CCGTCAGGGACGGCGGCAAGAAGCAAGCTGCGAACACCCTGAATGCAATG
GTGCTGGAAGCCAAGCCTGAACCTGAACTCGATTATAGTGGAAGCCAAGC
CTGA
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