mRNA_E-siliculosus-1a_F_contig1078.546.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig1078.546.1
Unique NamemRNA_E-siliculosus-1a_F_contig1078.546.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig1078.546.1 vs. uniprot
Match: D8LSM3_ECTSI (Co-chaperone grpE family protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSM3_ECTSI)

HSP 1 Score: 475 bits (1222), Expect = 2.920e-165
Identity = 322/343 (93.88%), Postives = 326/343 (95.04%), Query Frame = 1 
Query:    1 MRSATTSTLSRGAQRTRGTPLLSPGALRTSGYRERGLRLIMAAEPAEDSVAEAXXXXXXXXXXXXXSISEGEEAVEDEASGGGDGETEVVAEEGEGKEGEXXXXXXXXXXVDPMAEVKQQIKDLEKELMKEENRLRDVQDSVQEKGQMGFLRMAAQVDNFRKSSGAGTGDYEADAKAAVLRAMLPAFEPFEAAEEALNLETETEVKYNKSYQALYRQLKDVFTKIGATDFFGVVGEKFVYTRHEKASEEHNPVMKEGLIIKCVSPGLELKKNVIRKAVCVVSLGPEKKXXXXXXXXXXXXXXXXXXXXXGXXXXEAEEPPMRDAGVDA---EGEQPEGEQAAA 1020
            MRSATTSTL RGAQRTRGTPLLSPGALRTSGYRERG+ L+MAAEP+EDSVAEAXXXXXXXXXXX  SISEGEEAVEDEASGGGD ETEVVAEEGEGKEGEXXXXXXXXX VDPMAEVKQQIKDLEKELMKEENRLRDVQDSVQEKGQMGFLRMAAQVDNFRKSSGAGTGDYEADAKAAVLRAMLPAFEPFEAAEEALNL TETEVKYNKSYQALYRQLKDVFTKIGATDFFGVVGEKFVYTRHEKASEEHNPVMKEGLIIKCVSPGLELKKNVIRKAVCVVSLGPEK+  XXXXXXXXXXXXXXXXXXX XXXX    PPMRDAGVDA   EGEQPEGEQAAA
Sbjct:    1 MRSATTSTLFRGAQRTRGTPLLSPGALRTSGYRERGVHLMMAAEPSEDSVAEAXXXXXXXXXXX--SISEGEEAVEDEASGGGDVETEVVAEEGEGKEGEXXXXXXXXX-VDPMAEVKQQIKDLEKELMKEENRLRDVQDSVQEKGQMGFLRMAAQVDNFRKSSGAGTGDYEADAKAAVLRAMLPAFEPFEAAEEALNLATETEVKYNKSYQALYRQLKDVFTKIGATDFFGVVGEKFVYTRHEKASEEHNPVMKEGLIIKCVSPGLELKKNVIRKAVCVVSLGPEKEEPXXXXXXXXXXXXXXXXXXXXXXXXP---PPMRDAGVDAAAPEGEQPEGEQAAA 337
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BLAST of mRNA_E-siliculosus-1a_F_contig1078.546.1 vs. uniprot
Match: A0A6H5KMN5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMN5_9PHAE)

HSP 1 Score: 330 bits (846), Expect = 4.500e-110
Identity = 206/215 (95.81%), Postives = 209/215 (97.21%), Query Frame = 1 
Query:  385 MKEENRLRDVQDSVQEKGQMGFLRMAAQVDNFRKSSGAGTGDYEADAKAAVLRAMLPAFEPFEAAEEALNLETETEVKYNKSYQALYRQLKDVFTKIGATDFFGVVGEKFVYTRHEKASEEHNPVMKEGLIIKCVSPGLELKKNVIRKAVCVVSLGPEKKXXXXXXXXXXXXXXXXXXXXXGXXXXEAEEPPMRDAGVDA---EGEQPEGEQAAA 1020
            MKEENRLRDVQDSVQEKGQMGFLRMAAQVDNFRKSSGAGTGDYEADAKAAVLRAMLPAFEPFEAAEEALNLETETEVKYNKSYQALYRQLKDVFTK+GATDFFGVVGEKFVYTRHEKASEE+NPVMKEGLIIKCVSPGLELKKNVIRKAVCVVSLGPEKK XXXXXXXXXXXXXXXXXXXX  XXXEAEEPPMRDAGVDA   EGE+PEGEQAAA
Sbjct:    1 MKEENRLRDVQDSVQEKGQMGFLRMAAQVDNFRKSSGAGTGDYEADAKAAVLRAMLPAFEPFEAAEEALNLETETEVKYNKSYQALYRQLKDVFTKVGATDFFGVVGEKFVYTRHEKASEEYNPVMKEGLIIKCVSPGLELKKNVIRKAVCVVSLGPEKKEXXXXXXXXXXXXXXXXXXXX--XXXEAEEPPMRDAGVDAASPEGEEPEGEQAAA 213
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BLAST of mRNA_E-siliculosus-1a_F_contig1078.546.1 vs. uniprot
Match: A0A6H5KJC6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJC6_9PHAE)

HSP 1 Score: 130 bits (326), Expect = 1.750e-32
Identity = 109/124 (87.90%), Postives = 112/124 (90.32%), Query Frame = 1 
Query:    4 RSATTSTLSRGAQRTRGTPLLSPGALRTSGYRERGLRLIMAAEPAEDSVAEAXXXXXXXXXXXXX--SISEGEEAVE-DEASGGGDGETEVVAEEGEGKEGEXXXXXXXXXXVDPMAEVKQQIK 366
            RSATTSTL RGAQRTRGTPLLSPGALRTSGYRERG+ L+MAAEP EDSVAEAXXXXXXXXXXXXX  SISEGEEAVE DEASGGG GETEVVAEEG+G    XXXXXXXXX VDPMAEVKQQIK
Sbjct:   52 RSATTSTLYRGAQRTRGTPLLSPGALRTSGYRERGVHLMMAAEPTEDSVAEAXXXXXXXXXXXXXXPSISEGEEAVEYDEASGGGYGETEVVAEEGDGTXX-XXXXXXXXXEVDPMAEVKQQIK 174
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BLAST of mRNA_E-siliculosus-1a_F_contig1078.546.1 vs. uniprot
Match: A0A835ZD01_9STRA (GrpE-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZD01_9STRA)

HSP 1 Score: 114 bits (285), Expect = 6.490e-26
Identity = 66/132 (50.00%), Postives = 83/132 (62.88%), Query Frame = 1 
Query:  475 NFRKSSGAGTGDYEADAKAAVLRAMLPAFEPFEAA---EEALNLETETEVKYNKSYQALYRQLKDVFTKIGATDFFGVVGEKFVYTRHEKASEEHNPVMKEGLIIKCVSPGLELKKNVIRKAVCVVSLGPEK 861
            N+RK         +A+A A VLR+  P  E FEA    E  L LETE E  +N +YQALYRQL DV+TK+G TDFFGV GE +   RHEK  E+H  + + G +++C++ G EL   VIRKA  V SLGPEK
Sbjct:   93 NYRKRRNLDQKKLQAEAMARVLRSFEPVLEAFEAVVDGETDLKLETEQEQMFNSNYQALYRQLADVYTKLGVTDFFGVQGETYDGIRHEKVGEQHADI-RAGAVLECLAKGNELSGGVIRKAKVVTSLGPEK 223
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BLAST of mRNA_E-siliculosus-1a_F_contig1078.546.1 vs. uniprot
Match: A0A7S3XS89_HETAK (Hypothetical protein n=4 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XS89_HETAK)

HSP 1 Score: 85.1 bits (209), Expect = 8.870e-15
Identity = 57/164 (34.76%), Postives = 87/164 (53.05%), Query Frame = 1 
Query:  367 DLEKELMKEENRLRDVQDSVQEKGQMGFLRMAAQVDNFRKSSGAGTGDYEADAKAAVLRAMLPAFEPFEAAEEALN--LETETEVKYNKSYQALYRQLKDVFTKIGATDFFGVVGEKFVYTRHEKASEEHNPVMKEGLIIKCVSPGLELKKNVIRKAVCVVSLG 852
            DLEK+L   E + ++  D+V E G+ G++R AA VDN++++        +  + A  L   +P  + FE    A +     E E K   SY ALY QL   F K+G   +   VGE +   RHEK  E  +   K+G +++ ++PG+EL  ++IR A  VVS G
Sbjct:  103 DLEKQLSALEVKAKEAADNVLESGKTGYMRAAADVDNYKRALAKDLDQVKKTSMAGALTGFMPILDRFEEVYGAFDPAATPEGEAKLYGSYHALYGQLTLGFEKLGMAQYRAEVGEAYSVLRHEKTQEVESEA-KKGTVVEALAPGMELGGSIIRPARVVVSAG 265
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BLAST of mRNA_E-siliculosus-1a_F_contig1078.546.1 vs. uniprot
Match: A0A7S4D635_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4D635_HETAK)

HSP 1 Score: 84.7 bits (208), Expect = 2.620e-14
Identity = 57/164 (34.76%), Postives = 86/164 (52.44%), Query Frame = 1 
Query:  367 DLEKELMKEENRLRDVQDSVQEKGQMGFLRMAAQVDNFRKSSGAGTGDYEADAKAAVLRAMLPAFEPFEAAEEALN--LETETEVKYNKSYQALYRQLKDVFTKIGATDFFGVVGEKFVYTRHEKASEEHNPVMKEGLIIKCVSPGLELKKNVIRKAVCVVSLG 852
            DLEK+L   E + ++  D+V E G+ G++R AA VDN++++        +  + A  L   +P  + FE    A +     E E K   SY ALY QL   F K+G   +   VGE +   RHEK  E  +   K+G +++ ++PG+EL   +IR A  VVS G
Sbjct:  201 DLEKQLSALEVKAKEAADNVLESGKTGYMRAAADVDNYKRALAKDLDQVKKTSMAGALTGFMPILDRFEEVYGAFDPAATPEGEAKLYGSYHALYGQLTLGFEKLGMAQYRAEVGEAYSVLRHEKTQEVESEA-KKGTVVEALAPGMELGGTIIRPARVVVSAG 363
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BLAST of mRNA_E-siliculosus-1a_F_contig1078.546.1 vs. uniprot
Match: A0A7S2LF94_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2LF94_9STRA)

HSP 1 Score: 77.8 bits (190), Expect = 1.930e-12
Identity = 57/174 (32.76%), Postives = 94/174 (54.02%), Query Frame = 1 
Query:  340 MAEVKQQIKDLEKELMKEENRLRDVQDSVQEKGQMGFLRMAAQVDNFRKSSGAGTGDYEADAKAAVLRAMLPAFEPFEAAEEALNLETETEVKYNKSYQALYRQLKDVFT-KIGATDFFGVVGEKFVYTRHEKASEEHNPVMKEGLIIKCVSPGLELKKNVIRKAVCVVSLGPE 858
            M  +K++I  LE  L  +   L  V D  +   + G++R  A++DN+RK S   + +    ++AAV+R  LP  E  E       LE + E     +Y+AL   L++V   K+  +++   VG++F Y R+   +EE +  + +G II+ +SPGLE+K NV+R A  + S G E
Sbjct:  108 MVALKEEISKLEATLRSKRAALSGVLDEAELYTETGYMRTLAEMDNYRKRSEISSQNNRYSSRAAVVRQFLPILEELEM------LERQYE---GSAYKALRWDLQNVLQEKLDMSEYHAEVGDEFSYIRYNAVAEEFSEEVAKGCIIRQISPGLEIKGNVLRAADVIKSKGSE 272
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BLAST of mRNA_E-siliculosus-1a_F_contig1078.546.1 vs. uniprot
Match: A0A7S2V060_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V060_9STRA)

HSP 1 Score: 74.7 bits (182), Expect = 2.670e-11
Identity = 65/220 (29.55%), Postives = 111/220 (50.45%), Query Frame = 1 
Query:  214 EEAVEDEASGGGDGETEVVAEEGEGKEGEXXXXXXXXXXVDPMAEVKQQIKDLEKELMKEENRLRDVQDSVQEKGQMGFLRMAAQVDNFRKSSGAGTGDYEADAKAAVLRAMLPAFEPFEA----AEEALNLETETEVKYNKSYQALYRQLKDVFTKIGATDFFGVVGEKFVYTRHEKAS--EEHNPVMKEGLIIKCVSPGLELKKNVIRKAVCVVSLGP 855
            E AVE++    GD   EV A+  E ++ E           DP+AE+KQQI+                +  + + G+ G++ +AA+ DN+++SS +        A A V+   +P  + FEA    AE   NL +E  +K +++YQAL RQ+  +F  +GA+ F   VG +    ++  +S  E  N   K+G++++ +  G E+   +IR A CV+ + P
Sbjct:   67 EPAVENKVPEDGDEAAEVEAKPEEPEDAEE---------ADPLAELKQQIEXXXXXXXXXXXXXXISKRKILDNGKTGYVTIAAEADNYKRSSKSTIDSLGTRAMAEVISDFMPLVDKFEAIKETAEATENL-SEDVLKIHRNYQALPRQMMTIFEGLGASSFDATVGSQIDPIKNVASSTREPANDKEKDGMVVEALKSGFEINGVIIRPASCVMCVVP 276
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BLAST of mRNA_E-siliculosus-1a_F_contig1078.546.1 vs. uniprot
Match: A0A7S1T8I4_9CHLO (GrpE protein homolog n=2 Tax=Tetraselmis chuii TaxID=63592 RepID=A0A7S1T8I4_9CHLO)

HSP 1 Score: 72.8 bits (177), Expect = 1.320e-10
Identity = 51/157 (32.48%), Postives = 80/157 (50.96%), Query Frame = 1 
Query:  379 ELMKEENRLRDVQDSVQEKGQMGFLRMAAQVDNFRKSSGAGTGDYEADAKAAVLRAMLPAFEPFEAAEEALNLETETEVKYNKSYQALYRQLKDVFTKIGATDFFGVVGEKFVYTRHEKASEEHNPVMKEGLIIKCVSPGLELKKNVIRKAVCVVSL 849
            E + E N    +Q+S+    +  +LR  A  +NFRK S           K  V+   LP  + FE A + L LETE E K + SYQA+YRQ+ ++F  +G T     VG+ F   +HE   +E +  +++GLI+     G  L   ++R A+  V++
Sbjct:  139 ESVNEVNAAVKLQESIALAAKEQYLRSTADFENFRKRSQIEKDALRDSVKGDVVSDFLPLVDNFELASKQLKLETEAEKKIDASYQAMYRQMVEIFKNLGVTAV-ETVGKPFDPEKHEAIMQEESTEVEDGLILDEFRRGFMLGSKLLRPAMVKVAI 294
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BLAST of mRNA_E-siliculosus-1a_F_contig1078.546.1 vs. uniprot
Match: A0A835RLD5_VANPL (GrpE protein homolog n=1 Tax=Vanilla planifolia TaxID=51239 RepID=A0A835RLD5_VANPL)

HSP 1 Score: 72.4 bits (176), Expect = 5.190e-10
Identity = 45/139 (32.37%), Postives = 73/139 (52.52%), Query Frame = 1 
Query:  448 FLRMAAQVDNFRKSSGAGTGDYEADAKAAVLRAMLPAFEPFEAAEEALNLETETEVKYNKSYQALYRQLKDVFTKIGATDFFGVVGEKFVYTRHEKASEEHNPVMKEGLIIKCVSPGLELKKNVIRKAVCVVSLGPEKK 864
            FLR+ A + NFRKS+      + AD +A V+  +LP  + FE A+  +  ETE E K + SYQ +Y+Q  ++   +  +     VG  F  + HE  + E +   K G++++ +  G  L   V+R A+  VS GP  +
Sbjct:  675 FLRINADLKNFRKSAEKDRLSFTADIRAEVVEHLLPLIDNFERAKHQMKPETEREKKIDSSYQGIYKQFVEIMRSMRVS-VVETVGRPFDPSIHEAIAREESNQFKSGIVMQELRRGFYLCDQVLRPAIVKVSTGPRSE 812
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1078.546.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 15
Match NameE-valueIdentityDescription
D8LSM3_ECTSI2.920e-16593.88Co-chaperone grpE family protein n=1 Tax=Ectocarpu... [more]
A0A6H5KMN5_9PHAE4.500e-11095.81Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KJC6_9PHAE1.750e-3287.90Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835ZD01_9STRA6.490e-2650.00GrpE-domain-containing protein n=1 Tax=Tribonema m... [more]
A0A7S3XS89_HETAK8.870e-1534.76Hypothetical protein n=4 Tax=Heterosigma akashiwo ... [more]
A0A7S4D635_HETAK2.620e-1434.76Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S2LF94_9STRA1.930e-1232.76Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]
A0A7S2V060_9STRA2.670e-1129.55Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S1T8I4_9CHLO1.320e-1032.48GrpE protein homolog n=2 Tax=Tetraselmis chuii Tax... [more]
A0A835RLD5_VANPL5.190e-1032.37GrpE protein homolog n=1 Tax=Vanilla planifolia Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1078contigE-siliculosus-1a_F_contig1078:25374..29584 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size1023
Model size1171
Exons4
Ec32 orthologEc-09_002170.1
Ec32 ortholog descriptionco-chaperone grpE family protein
Hectar predicted targeting categoryother localisation
BRITEko00000,ko03029,ko03110
Best eggNOG OGNA|NA|NA
Best tax levelEukaryota
COG Functional cat.O
EggNOG OGsCOG0576@1,KOG3003@2759
EggNOG free text desc.adenyl-nucleotide exchange factor activity
GOsGO:0000166,GO:0000774,GO:0001405,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0005744,GO:0005759,GO:0006457,GO:0006605,GO:0006626,GO:0006790,GO:0006810,GO:0006839,GO:0006886,GO:0006996,GO:0007005,GO:0008104,GO:0008150,GO:0008152,GO:0009987,GO:0015031,GO:0015833,GO:0016020,GO:0016043,GO:0016226,GO:0017038,GO:0017076,GO:0019866,GO:0022607,GO:0030150,GO:0030234,GO:0030554,GO:0031090,GO:0031163,GO:0031966,GO:0031967,GO:0031974,GO:0031975,GO:0032991,GO:0033036,GO:0033365,GO:0034613,GO:0036094,GO:0042026,GO:0042886,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044085,GO:0044237,GO:0044422,GO:0044424,GO:0044425,GO:0044429,GO:0044444,GO:0044446,GO:0044455,GO:0044464,GO:0044571,GO:0044743,GO:0045184,GO:0046907,GO:0050790,GO:0051082,GO:0051179,GO:0051186,GO:0051234,GO:0051641,GO:0051649,GO:0055085,GO:0060589,GO:0060590,GO:0065002,GO:0065007,GO:0065009,GO:0070013,GO:0070585,GO:0070727,GO:0071702,GO:0071705,GO:0071806,GO:0071840,GO:0072594,GO:0072655,GO:0097159,GO:0098772,GO:0098796,GO:0098798,GO:0098800,GO:1901265,GO:1901363,GO:1990542
KEGG koko:K03687
Preferred namemge1
Seed eggNOG ortholog2880.D8LSM3
Seed ortholog evalue3.3e-133
Seed ortholog score481.5
Taxonomic scopeEukaryota
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1078.546.1prot_E-siliculosus-1a_F_contig1078.546.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig1078 25522..29584 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927579.1552324-UTR-E-siliculosus-1a_F_contig1078:25373..255211622927579.1552324-UTR-E-siliculosus-1a_F_contig1078:25373..25521Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1078 25374..25521 -
1696318595.1692102-UTR-E-siliculosus-1a_F_contig1078:25373..255211696318595.1692102-UTR-E-siliculosus-1a_F_contig1078:25373..25521Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1078 25374..25521 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927579.1756384-CDS-E-siliculosus-1a_F_contig1078:25521..258091622927579.1756384-CDS-E-siliculosus-1a_F_contig1078:25521..25809Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1078 25522..25809 -
1696318595.1791408-CDS-E-siliculosus-1a_F_contig1078:25521..258091696318595.1791408-CDS-E-siliculosus-1a_F_contig1078:25521..25809Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1078 25522..25809 -
1622927579.1933513-CDS-E-siliculosus-1a_F_contig1078:26406..265561622927579.1933513-CDS-E-siliculosus-1a_F_contig1078:26406..26556Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1078 26407..26556 -
1696318595.1865413-CDS-E-siliculosus-1a_F_contig1078:26406..265561696318595.1865413-CDS-E-siliculosus-1a_F_contig1078:26406..26556Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1078 26407..26556 -
1622927579.203616-CDS-E-siliculosus-1a_F_contig1078:27582..278011622927579.203616-CDS-E-siliculosus-1a_F_contig1078:27582..27801Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1078 27583..27801 -
1696318595.1936545-CDS-E-siliculosus-1a_F_contig1078:27582..278011696318595.1936545-CDS-E-siliculosus-1a_F_contig1078:27582..27801Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1078 27583..27801 -
1622927579.2154737-CDS-E-siliculosus-1a_F_contig1078:29218..295841622927579.2154737-CDS-E-siliculosus-1a_F_contig1078:29218..29584Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1078 29219..29584 -
1696318595.2010355-CDS-E-siliculosus-1a_F_contig1078:29218..295841696318595.2010355-CDS-E-siliculosus-1a_F_contig1078:29218..29584Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1078 29219..29584 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig1078.546.1

>prot_E-siliculosus-1a_F_contig1078.546.1 ID=prot_E-siliculosus-1a_F_contig1078.546.1|Name=mRNA_E-siliculosus-1a_F_contig1078.546.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=341bp
MRSATTSTLSRGAQRTRGTPLLSPGALRTSGYRERGLRLIMAAEPAEDSV
AEAAAAAAAAAAAEEPSISEGEEAVEDEASGGGDGETEVVAEEGEGKEGE
KKDEEEKEEEVDPMAEVKQQIKDLEKELMKEENRLRDVQDSVQEKGQMGF
LRMAAQVDNFRKSSGAGTGDYEADAKAAVLRAMLPAFEPFEAAEEALNLE
TETEVKYNKSYQALYRQLKDVFTKIGATDFFGVVGEKFVYTRHEKASEEH
NPVMKEGLIIKCVSPGLELKKNVIRKAVCVVSLGPEKKEEPKEEEEEAAA
PAAAAAAAEGEAAAEAEEPPMRDAGVDAEGEQPEGEQAAA*
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mRNA from alignment at E-siliculosus-1a_F_contig1078:25374..29584-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig1078.546.1 ID=mRNA_E-siliculosus-1a_F_contig1078.546.1|Name=mRNA_E-siliculosus-1a_F_contig1078.546.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=4211bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1078:25374..29584- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGCGGTCGGCAACAACCTCGACGCTGTCTAGAGGAGCCCAGCGAACGAG
AGGCACGCCGCTGCTCTCGCCCGGTGCCCTAAGGACGAGCGGGTACCGAG
AAAGAGGACTGCGCCTGATTATGGCGGCGGAGCCCGCGGAGGATTCGGTA
GCGGAGGCTGCTGCTGCTGCTGCTGCTGCTGCCGCTGCTGAGGAGCCGTC
CATTTCCGAGGGAGAGGAGGCGGTTGAGGACGAGGCGTCGGGGGGTGGAG
ACGGAGAGACAGAGGTCGTGGCGGAGGAGGGAGAGGGGAAAGAAGGGGAG
AAGAAGGACGAGGAGGAGAAGGAGGAGGAGGTTGACCCCATGGCAGAAGT
CAAGCAACAAATCAAGGTGCGTGAGTACTGAGGTACTTCATGTGAACATG
CTACGTGTCACCTGGGTACACTGCACACAGCTGTTTCAATGTACAGCAGC
GGTATGCACTCGATCCGTGGCGATCACACCACAGCGCAACAGCATAGCGG
GCGGGTGTTAGCTGCCACGAGTTCGTATGAAAGCTTTTGCCTGGAATGCA
ACGTACTCCATGATTCTGCTGGTGAAGCAGGGCCGTGCGGCGAAAGTTGC
GAAGATGTTGATGTTGTCAATCTTTTCATCTTTTCTAGAAACGAGCCTTG
AACGAGCGCGAAAAGATTTCATGCGAGAGATCCCCAATCCTGTTGGTGCT
ACTCACAGAACTCCGTCGTGTGTTGGTGCTACCTTACCATGGTGTGGGGG
GTGGAAGGGGGGTGTACTCTTATGTTTTGCATGCCTTAGCGGTTAGACCA
TTGACCACGCGTCCTCGAGAGGACGGAGCATTGTTCCCACAAGACCAATC
GTCCCTTCCTACTTGCCGAAGGTGGCTCAATATTGATTCCTACCTACCTA
TCCTGTCGATTATCATTTCCGCCCTTTTCAACCTACTTCCGAAGCCCAGT
CATGTACACTTCCCTAGCCTTCTTGTACAACCGATATTCCGCAACTACAT
GAACCCGGCCTTCGTACTCGGAGCCGCTTTCACATTTGAACTTGTCGTCT
TCATCGATTTCCTTTCGAATCTCCGTCTACTTTCTCGAAGGCCAATGTCC
CCGGTCAAGAAAATGACCCTCAGCTTTGCCCCTGCATCCAAATGGTCCAT
GAAGGTTTTTCCTTGAACCCTTTCTTATTTCAAAATTCGTACACATCTAG
ACCCTCTTCATCCTCGGTTTCTTTGGTTAGATTGTGTTCTTCTCTCTCGA
CAATAGCAACAGATATCTTCTCCTTGCACCCCCCTAGGCCTTCCCAGCTT
TTCAACTCGCCAATTTCGAGCTCCTTCCATATATGTATGCTTGGGGTATC
AGCCGGGGTCACGCAGGAGGAAGGTTATACTCGTTGTTGGTTCACAGTCA
GTGCCCCGCCTTTTGTCATCTGGTGCTCGCCTTGGTTTTTGTCGCGAGAA
GGGTTCAGCCGTGCCTTTCCCTCGTCGACCATGAAATCGAACTTGTGCTA
ATGTATTGACACATTTCCACCTCAAGGTGCAGAGCTCTCTTCTTCGTCCC
AGAGAGAAAGTCAAGCTCCAACCTGCTACAAGCAGGTGCACGAGCTCAAA
CGTCCAAACGCTAGACCGTGCTCTGGGTTGAATTCGACTCAAAGCCAAAC
TACTGCGCCTATGCTAATCACACCGCACGAAGACATGATCCTTTCTAGAC
GGGTCACTTGACTGGTCTGGTCTATTATATGACTCCAAAATGTTCAGCAA
TATCTAAAGCGTCTGTCAACTCGTACCTAACAGGATCTCGAGAAGGAGCT
GATGAAGGAGGAGAACCGCCTCAGGGACGTCCAAGACTCGGTGCAGGAAA
AGGGGCAGATGGGGTTCCTGAGAATGGCGGCCCAGGTGGACAACTTCCGC
AAGTCGAGCGGGGCCGGGACGGGGGACTACGAGGCGGACGCGAAGGCCGC
CGTGCTGAGGGCGATGCTGCCGGCGTTCGAGCCGTTTGAGGCCGCGGAGG
AGGTGGGCTTGTTGTTGTTGTGGTTTGATGTGGTGTTGGTGGTGGTAGTG
GCATTGGCCGTTTGAGGCTGCTGAGGAGGTGGGTTGTTGTTGTTGTGGTT
GGTGGGAGTCTTTTTTAGTGTAGCGGATGCAGACTAGTTTAACCTCGCAC
GCACTTCGATTCTCCAGACAATTGGCTGGTGGTGTGATGGTCTTCTGGAA
AGCTCGCATCTAGTAGCACACCCGCTCCTGCTTCACCTGGAGTCTTAAAC
GGAGTATGGTTGAGCGTGAGAATGTACGGGCACGATTACACAAGCGGTCT
TGTCGCGTGATCTAGCAATGCCCGTGGATGGTGCTGCGAACGATGCCGAT
ATGTTTTGAGCCTTTTGGGGGATCACAAAAGAGCTGTGTGTATTACCAAG
TGCCGTCGGTTAATGGTGTTCGTGGTTCGTTGGCGCTTTGATCGTAGAAA
GAACACGCCAGCAGCGAGCGGCGTTTCCTGGCTGCTTTTGTGCTGCTGGT
GAAGGGTTTGCCTTTCGGGCCGCATGGTGGTGGTGGTGGTGGTTGTTGTT
GTCAAGGCGGAAAACCACAACCCGCTTTGCAGGAAATCCTCATGGCTCGT
GCTGATGGCATCGACTCCTGTGCACGTACCACTTGTGGTCGCCGTGTCAC
GATAAATATCATCGGTGTTTTCTTCTGACTCGAGTTCTCACGCTCACTTT
GTATGCATCGCGTTGCGTTGTTAGCCTATCATGGCTCAAGTCCTCAAAGT
TCACTGCATGCCTAGCGTATCGCCCTTAGCCGACCGACCCTTTCTCCCAA
GTCCTCAACGGTTCACGGTGCATGCATACTTGTAGCGTTCCGCTCTTATT
ATAGCCGAAACAGCCTTTCTCCACGTCCAAGTCCTCAACGTTCCACTGTG
CGTGCATAGCACTCCGCTCTTAGCCGACCGAACCTTTCCCCTTCCTCTCC
CGGTGCCATGGTGCTGTGCGTGCCGCGTGGGTGGGTGTCTCGCGCGGGCT
CTGTTTTTTTTTTTTTTTGTGTGGGCAGGCGCTAAACCTCGAGACGGAGA
CCGAGGTGAAGTATAACAAGAGCTACCAGGCGTTGTACCGGCAGCTCAAG
GACGTCTTCACCAAGATCGGCGCGACCGACTTCTTCGGCGTGGTGGGGGA
GAAGTTCGTCTACACCCGACACGAAAAGGTACGCTTGATCTACAGTACAC
GAGGGACACAATCCAATCCATTCTAAGCCACAACCCGATCCAAGAAGTCC
GTCCGTCCGGAAACAGCCAACGTGTTTTTTCTTTCGCGGATTGTTGCATG
TTCCCTGTGGAATGTCCCTACGCGTGACTCGAGTCCTGCTTCTACTATTC
TCTGCGCTGTGATACTGCCACATCCAGCGCCGACTGATCAGCTAGACTGT
ACAGTTCAGTGGTTATCCCCCCATGTCCGCCCAGAATCTGTTTGCTATAG
GAGTTGCCACCAGCTTCACCCCCTAATCACCATCTCGTGTACGCAACATA
CAGTAGTGGTCCCGATATAGTGGCGCCCTGAATAGTGAAATGCCCTCAAT
TGTGGCATCAAAATCTCTCGTCACAATCTCAAAATGTACAGAATGACCTG
ATATATCGAATAGTGGCACTGCCCTGAAAAATGGCATACCATTTTGATAT
TTTGCTCTTGCCGCTGCATGCCAATCTATATCGGGACCACCTGTATGAGC
ACATGAGCATGCACCCCCTGCAACCGACGGTTTCACCCCTTGCGCCGCCT
CTTTTGGTACTGTACTGATATTCAGGCGTCCGAGGAGCATAACCCCGTGA
TGAAGGAGGGGTTGATCATCAAGTGCGTGTCGCCGGGGCTCGAGCTCAAG
AAGAACGTCATCCGGAAAGCGGTGTGCGTCGTCTCCCTGGGGCCCGAAAA
GAAGGAGGAGCCCAAGGAGGAAGAGGAAGAGGCGGCGGCTCCGGCGGCGG
CGGCGGCGGCGGCGGAGGGGGAAGCGGCGGCTGAGGCCGAAGAGCCCCCG
ATGCGCGACGCCGGGGTCGACGCTGAGGGGGAGCAGCCGGAGGGAGAGCA
GGCGGCCGCATGAGCATAACAGGGATATTATGGTCGCGATTTCGTTGGTT
ATGATCGTGTACGACATTTCGCGTGTCTAGAGTGGATGGATGGAGGTCGG
GCGATTCCGTCCGCTATGATCGTGTACGGCGTTTCACGTGTTTAGAGTGG
AGGTCCGCGGG
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1078:25374..29584-

>mRNA_E-siliculosus-1a_F_contig1078.546.1 ID=mRNA_E-siliculosus-1a_F_contig1078.546.1|Name=mRNA_E-siliculosus-1a_F_contig1078.546.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=2046bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1078:25374..29584- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGCGGTCGGCAACAACCTCGACGCTGTCTAGAGGAGCCCAGCGAACGAG
AGGCACGCCGCTGCTCTCGCCCGGTGCCCTAAGGACGAGCGGGTACCGAG
AAAGAGGACTGCGCCTGATTATGGCGGCGGAGCCCGCGGAGGATTCGGTA
GCGGAGGCTGCTGCTGCTGCTGCTGCTGCTGCCGCTGCTGAGGAGCCGTC
CATTTCCGAGGGAGAGGAGGCGGTTGAGGACGAGGCGTCGGGGGGTGGAG
ACGGAGAGACAGAGGTCGTGGCGGAGGAGGGAGAGGGGAAAGAAGGGGAG
AAGAAGGACGAGGAGGAGAAGGAGGAGGAGGTTGACCCCATGGCAGAAGT
CAAGCAACAAATCAAGATGCGGTCGGCAACAACCTCGACGCTGTCTAGAG
GAGCCCAGCGAACGAGAGGCACGCCGCTGCTCTCGCCCGGTGCCCTAAGG
ACGAGCGGGTACCGAGAAAGAGGACTGCGCCTGATTATGGCGGCGGAGCC
CGCGGAGGATTCGGTAGCGGAGGCTGCTGCTGCTGCTGCTGCTGCTGCCG
CTGCTGAGGAGCCGTCCATTTCCGAGGGAGAGGAGGCGGTTGAGGACGAG
GCGTCGGGGGGTGGAGACGGAGAGACAGAGGTCGTGGCGGAGGAGGGAGA
GGGGAAAGAAGGGGAGAAGAAGGACGAGGAGGAGAAGGAGGAGGAGGTTG
ACCCCATGGCAGAAGTCAAGCAACAAATCAAGGATCTCGAGAAGGAGCTG
ATGAAGGAGGAGAACCGCCTCAGGGACGTCCAAGACTCGGTGCAGGAAAA
GGGGCAGATGGGGTTCCTGAGAATGGCGGCCCAGGTGGACAACTTCCGCA
AGTCGAGCGGGGCCGGGACGGGGGACTACGAGGCGGACGCGAAGGCCGCC
GTGCTGAGGGCGATGCTGCCGGCGTTCGAGCCGTTTGAGGCCGCGGAGGA
GGATCTCGAGAAGGAGCTGATGAAGGAGGAGAACCGCCTCAGGGACGTCC
AAGACTCGGTGCAGGAAAAGGGGCAGATGGGGTTCCTGAGAATGGCGGCC
CAGGTGGACAACTTCCGCAAGTCGAGCGGGGCCGGGACGGGGGACTACGA
GGCGGACGCGAAGGCCGCCGTGCTGAGGGCGATGCTGCCGGCGTTCGAGC
CGTTTGAGGCCGCGGAGGAGGCGCTAAACCTCGAGACGGAGACCGAGGTG
AAGTATAACAAGAGCTACCAGGCGTTGTACCGGCAGCTCAAGGACGTCTT
CACCAAGATCGGCGCGACCGACTTCTTCGGCGTGGTGGGGGAGAAGTTCG
TCTACACCCGACACGAAAAGGCGCTAAACCTCGAGACGGAGACCGAGGTG
AAGTATAACAAGAGCTACCAGGCGTTGTACCGGCAGCTCAAGGACGTCTT
CACCAAGATCGGCGCGACCGACTTCTTCGGCGTGGTGGGGGAGAAGTTCG
TCTACACCCGACACGAAAAGGCGTCCGAGGAGCATAACCCCGTGATGAAG
GAGGGGTTGATCATCAAGTGCGTGTCGCCGGGGCTCGAGCTCAAGAAGAA
CGTCATCCGGAAAGCGGTGTGCGTCGTCTCCCTGGGGCCCGAAAAGAAGG
AGGAGCCCAAGGAGGAAGAGGAAGAGGCGGCGGCTCCGGCGGCGGCGGCG
GCGGCGGCGGAGGGGGAAGCGGCGGCTGAGGCCGAAGAGCCCCCGATGCG
CGACGCCGGGGTCGACGCTGAGGGGGAGCAGCCGGAGGGAGAGCAGGCGG
CCGCATGAGCGTCCGAGGAGCATAACCCCGTGATGAAGGAGGGGTTGATC
ATCAAGTGCGTGTCGCCGGGGCTCGAGCTCAAGAAGAACGTCATCCGGAA
AGCGGTGTGCGTCGTCTCCCTGGGGCCCGAAAAGAAGGAGGAGCCCAAGG
AGGAAGAGGAAGAGGCGGCGGCTCCGGCGGCGGCGGCGGCGGCGGCGGAG
GGGGAAGCGGCGGCTGAGGCCGAAGAGCCCCCGATGCGCGACGCCGGGGT
CGACGCTGAGGGGGAGCAGCCGGAGGGAGAGCAGGCGGCCGCATGA
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