mRNA_E-siliculosus-1a_F_contig100.55.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig100.55.1
Unique NamemRNA_E-siliculosus-1a_F_contig100.55.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig100.55.1 vs. uniprot
Match: D7FN49_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FN49_ECTSI)

HSP 1 Score: 309 bits (792), Expect = 2.930e-97
Identity = 153/156 (98.08%), Postives = 154/156 (98.72%), Query Frame = 3 
Query:  927 LSPLEFSRRTCAELGIGLSFVQPIAQSIGQQLIEYGRKNPMWAVEGTIAPAGENIQTVIIDVRFRSVIFRDRLQWDVNCPYNSPEQFARITVADLNLPQEMEPIIALTIHQQVSRFRMAAPSSTTNKEDAQFKDVEGPCVSSALNSSSLYEVKAPP 1394
            LSPLEFSRRTCAELGIG+SFVQPIAQSIGQQLIEYGRKNPMWAVEGTIAPAGENIQTVIIDVRFRSVIFRDRLQWDVNCPYNSPEQFARITVADLNLPQEMEPIIALT HQQVSRFRMAAPSSTTN EDAQFKDVEGPCVSSALNSSSLYEVKAPP
Sbjct:   39 LSPLEFSRRTCAELGIGVSFVQPIAQSIGQQLIEYGRKNPMWAVEGTIAPAGENIQTVIIDVRFRSVIFRDRLQWDVNCPYNSPEQFARITVADLNLPQEMEPIIALTTHQQVSRFRMAAPSSTTNNEDAQFKDVEGPCVSSALNSSSLYEVKAPP 194
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BLAST of mRNA_E-siliculosus-1a_F_contig100.55.1 vs. uniprot
Match: A0A835YTF3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YTF3_9STRA)

HSP 1 Score: 95.5 bits (236), Expect = 2.020e-16
Identity = 49/126 (38.89%), Postives = 76/126 (60.32%), Query Frame = 3 
Query:  927 LSPLEFSRRTCAELGIGLSFVQPIAQSIGQQLIEYGRKNPMWAVEGTIA---PAGENIQTVIIDVRFRSVIFRDRLQWDVNCPYNSPEQFARITVADLNLPQEMEPIIALTIHQQVSRFRMAAPSS 1295
            LSP  F+  T A+L +      P+A++I  Q++      P+W+     A   PAGE +  + +++R  +V++RD+ +WD+N P NSPE FA  TVADL LPQ MEP IAL + +Q++ +R    S+
Sbjct:  530 LSPEAFAAATAADLALPRKLEAPLARAIRAQVVTAQATLPVWSGSSGAAAMYPAGEALVPIELELRLGAVLYRDKFEWDMNEPLNSPEAFAARTVADLALPQPMEPAIALALREQLANYRQLTRSA 655
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BLAST of mRNA_E-siliculosus-1a_F_contig100.55.1 vs. uniprot
Match: A0A2G4T9N8_RHIZD (SNF5-domain-containing protein n=1 Tax=Rhizopus microsporus ATCC 52813 TaxID=1340429 RepID=A0A2G4T9N8_RHIZD)

HSP 1 Score: 65.5 bits (158), Expect = 2.310e-7
Identity = 51/187 (27.27%), Postives = 86/187 (45.99%), Query Frame = 3 
Query:  927 LSPLEFSRRTCAELGIGLSFVQPIAQSIGQQLIEYGR--------------------------KNPMWAVEGTIAPAGENIQTVI-IDVRFRSVIFRDRLQWDVNCPYNSPEQFARITVADLNLPQEMEPIIALTIHQQVSRFRMAAPSSTT---NKE--DAQFKDVEGPCVSSALNSSSLYEVKAP 1391
            +SP++F+R TC +LG+ L FV+ IA SI  Q+ +Y                            K+ M  ++  +      ++  I +D+   ++   DR +WD+ C  NSPE FA++ V++L L  E +  IA +I +Q+  +  +   S     NK   D  FK    P V  A+ +S+  +   P
Sbjct:  197 VSPIQFARITCDDLGLPLYFVRLIAASIVDQIEDYYSSIYGADEENVESTSLHHPLAIRNTKLKDGMLDLKTDLFTGKTELRIFIKLDITIGNMELNDRFEWDITCKENSPEAFAKVLVSELGLSGEFKSAIAHSIREQIYTYVKSLHLSQYHDWNKSIMDRGFKKSFLPIVKKAMRNSNKIKRFTP 383
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BLAST of mRNA_E-siliculosus-1a_F_contig100.55.1 vs. uniprot
Match: A3LPL9_PICST (Chromatin structure remodeling complex protein SFH1 (SNF5 homolog 1) n=1 Tax=Scheffersomyces stipitis (strain ATCC 58785 / CBS 6054 / NBRC 10063 / NRRL Y-11545) TaxID=322104 RepID=A3LPL9_PICST)

HSP 1 Score: 64.7 bits (156), Expect = 2.590e-7
Identity = 41/140 (29.29%), Postives = 66/140 (47.14%), Query Frame = 3 
Query:  927 LSPLEFSRRTCAELGIGLSFVQPIAQSIGQQLIEYGRKNPMWAVEGTIAPAGENIQTVII---DVRFRSVIFRDRLQWDVNCPYNSPEQFARITVADLNLPQEMEPIIALTIHQQVSRFRMAAPSSTTNKEDAQFKDVEG 1337
            ++P +F+   C +L +  S    IA+SI QQ+ +Y   + +            N+  V+I    V     +F+D+ +WD+N    +PE FARI VAD+    E  P I+  +H+ + R +      T N E   F  V G
Sbjct:  144 ITPYQFADILCNDLELPNSMNSQIAESIVQQIDDYNYASNL--------QLPSNVPCVVIIDLSVSLNKHLFQDKFEWDLNGNGVTPEDFARIVVADMGFSLEFYPAISHALHEIIIRVKKEIVDGTYNNEIHNFHQVRG 275
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BLAST of mRNA_E-siliculosus-1a_F_contig100.55.1 vs. uniprot
Match: A0A7S3CK57_9SPIT (Hypothetical protein (Fragment) n=1 Tax=Strombidium rassoulzadegani TaxID=1082188 RepID=A0A7S3CK57_9SPIT)

HSP 1 Score: 53.9 bits (128), Expect = 5.590e-5
Identity = 23/69 (33.33%), Postives = 40/69 (57.97%), Query Frame = 3 
Query: 1080 GENIQTVIIDVRFRSVIFRDRLQWDVNCPYNSPEQFARITVADLNLPQEMEPIIALTIHQQVSRFRMAA 1286
            GE ++ + + +R  +++ RD+ +WD+N P NSPE FA     DL L  +    IA +I +Q++  +  A
Sbjct:    3 GELLRVIQLKIRIGNIVLRDKFEWDINNPQNSPEDFAESLCTDLGLGSDFMLPIAHSIREQINEHQRTA 71
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig100.55.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D7FN49_ECTSI2.930e-9798.08Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835YTF3_9STRA2.020e-1638.89Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A2G4T9N8_RHIZD2.310e-727.27SNF5-domain-containing protein n=1 Tax=Rhizopus mi... [more]
A3LPL9_PICST2.590e-729.29Chromatin structure remodeling complex protein SFH... [more]
A0A7S3CK57_9SPIT5.590e-533.33Hypothetical protein (Fragment) n=1 Tax=Strombidiu... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig100contigE-siliculosus-1a_F_contig100:31769..34443 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size612
Model size2382
Exons2
Ec32 orthologEc-06_008390.1
Ec32 ortholog descriptionSNF5
Hectar predicted targeting categoryother localisation
BRITEko00000,ko00001,ko00002,ko01009,ko03021,ko03036,ko03041,ko03110,ko04131
Best eggNOG OGNA|NA|NA
Best tax levelEukaryota
COG Functional cat.K
EggNOG OGsKOG1649@1,KOG1649@2759
EggNOG free text desc.chromatin disassembly
GOsGO:0006139,GO:0006259,GO:0006281,GO:0006325,GO:0006333,GO:0006337,GO:0006338,GO:0006355,GO:0006357,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0008150,GO:0008152,GO:0009889,GO:0009987,GO:0010468,GO:0010556,GO:0016043,GO:0019219,GO:0019222,GO:0022411,GO:0031323,GO:0031326,GO:0031498,GO:0032984,GO:0032986,GO:0033554,GO:0034641,GO:0034728,GO:0043044,GO:0043170,GO:0043933,GO:0044237,GO:0044238,GO:0044260,GO:0046483,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051252,GO:0051276,GO:0051716,GO:0060255,GO:0065007,GO:0071704,GO:0071824,GO:0071840,GO:0080090,GO:0090304,GO:1901360,GO:1903506,GO:2000112,GO:2001141
KEGG ModuleM00354
KEGG Pathwayko03040,ko04141,ko04714,ko05225,map03040,map04141,map04714,map05225
KEGG koko:K09530,ko:K11648,ko:K12662
Seed eggNOG ortholog2880.D7FN49
Seed ortholog evalue1.7e-81
Seed ortholog score308.9
Taxonomic scopeEukaryota
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig100.55.1prot_E-siliculosus-1a_F_contig100.55.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig100 32754..33658 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927505.0513783-UTR-E-siliculosus-1a_F_contig100:31768..327531622927505.0513783-UTR-E-siliculosus-1a_F_contig100:31768..32753Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig100 31769..32753 -
1696318556.1263645-UTR-E-siliculosus-1a_F_contig100:31768..327531696318556.1263645-UTR-E-siliculosus-1a_F_contig100:31768..32753Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig100 31769..32753 -
1622927505.0838747-UTR-E-siliculosus-1a_F_contig100:33658..344431622927505.0838747-UTR-E-siliculosus-1a_F_contig100:33658..34443Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig100 33659..34443 -
1696318556.172664-UTR-E-siliculosus-1a_F_contig100:33658..344431696318556.172664-UTR-E-siliculosus-1a_F_contig100:33658..34443Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig100 33659..34443 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927505.061567-CDS-E-siliculosus-1a_F_contig100:32753..329271622927505.061567-CDS-E-siliculosus-1a_F_contig100:32753..32927Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig100 32754..32927 -
1696318556.1385255-CDS-E-siliculosus-1a_F_contig100:32753..329271696318556.1385255-CDS-E-siliculosus-1a_F_contig100:32753..32927Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig100 32754..32927 -
1622927505.0718234-CDS-E-siliculosus-1a_F_contig100:33220..336581622927505.0718234-CDS-E-siliculosus-1a_F_contig100:33220..33658Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig100 33221..33658 -
1696318556.1503365-CDS-E-siliculosus-1a_F_contig100:33220..336581696318556.1503365-CDS-E-siliculosus-1a_F_contig100:33220..33658Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig100 33221..33658 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig100.55.1

>prot_E-siliculosus-1a_F_contig100.55.1 ID=prot_E-siliculosus-1a_F_contig100.55.1|Name=mRNA_E-siliculosus-1a_F_contig100.55.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=204bp
MAFPPVSGGLDTNSTLLLFIDSTCLHRNCRFSNDLPSLCFVERRAMQLSP
LEFSRRTCAELGIGLSFVQPIAQSIGQQLIEYGRKNPMWAVEGTIAPAGE
NIQTVIIDVRFRSVIFRDRLQWDVNCPYNSPEQFARITVADLNLPQEMEP
IIALTIHQQVSRFRMAAPSSTTNKEDAQFKDVEGPCVSSALNSSSLYEVK
APP*
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mRNA from alignment at E-siliculosus-1a_F_contig100:31769..34443-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig100.55.1 ID=mRNA_E-siliculosus-1a_F_contig100.55.1|Name=mRNA_E-siliculosus-1a_F_contig100.55.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=2675bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig100:31769..34443- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
CCGCCCTTCTCTCTTCAGACTTCAGGCGACAGGGCATCGACAACTGTGCT
ACAATATTTCTATTGTGGTGAAGAACGGTGCTCCGTCTCGAAATGACACA
TTGTCATGAAGGAGTTGAACGTAAAGCACGCCTACCCCGCTCTCTGTAAT
CTCGCTCTCTCTCTCTCGCTCCTTCTCTCTCTCTTTCCCGACCCTCAGGT
TATGTGGGATATCCACCAGAGTTCGGTAAGTGACTCCACCACATTACGCT
TCATCTAGGAGGAGGCAAGTCAGTTTGTAAACTCTAGGGCACGCCACGGT
AGAGGACCACGATTGCGCAACAGCAGCATAACTGCTGTCGCAGGCGCAAC
TATACACAGACGCGAAGAAATTTCTTTTGGGAGGTGCACGTCCTGTAGTT
TGCATCATGCTCGTTCCGCAACAGCAGTAACCTGTGCCCTCGTCGTCTTG
ACTCTGTTAGTCCTGGCAGGCCGTGCTCTCTTCGCGGAATAGTATGGGCT
TCACGCACGTCTCGTGGTACGCTATTCCCCAACTCACAGCAAAATCAGTG
GCAACCGGTCAACTGGCATCTATCGTGATCGTGTACACGTGTACTCCGCT
CCATGAGGGTGTTTCTATGTTTTTTTCAACTGCTGTGGTTATGGTAATAG
TCCTGAAAGCGACAGCTCCAAAACAGAGTACGTAGGGTATGATGTATCTT
TTTTTGTAGGGAATGTTCACGGACCACGACCGCAAGTGCGTGTTTACCAC
TGCAACTCATTCTGTGAAGGAAAGACTTTCGTTAGATGGCCTTTCCACCA
GTATCTGGTGGTCTTGACACGAATAGCACATTGTTATTGTTTATTGATAG
CACGTGCTTACACAGAAACTGCCGCTTCTCCAATGACCTTCCATCCCTTT
GTTTTGTCGAACGACGCGCGATGCAGCTATCTCCACTAGAGTTCTCGAGG
AGGACGTGTGCAGAGCTTGGTATTGGGTTGTCGTTTGTCCAGCCAATAGC
TCAGTCTATTGGCCAACAACTGATAGAATATGGGCGAAAGAACCCAATGT
GGGCAGTGGAGGGAACAATTGCACCAGCGGGCGAAAACATCCAGACTGTG
ATCATCGACGTACGCTTTCGATCAGTCATTTTTAGAGATCGCTTGCAGTG
GGATGTCAACTGCCCCTACAACAGCCCGGAGCAGTTCGCGAGGATCACGG
TGGCGGATTTAAATTTACCACAGGTGAGTACCACCAGGTAAAGAGCAGTG
GTTCCTTTCGGATTGGGTTGTCTTCAACGATGACGCCGAGCGTCTAAAAC
CCAAGTTTTAGGTCACAGCTCACCATGTGTAGGATGTAGTGCAACTGGAT
CGACCGTGGTGGAGGGTGCGCAATCGTTCCCGTGCCACGTTCACGGTTAC
GGTTGCACTTTCGTGACGAGGATTCCTTGCTGGTATGTTGGCATACCCGC
CTCCTCTCACATTTGTTGAGACGAACAACCGCCGTTGCGCAATGTCGGTG
ACGCTTGTATTTGCAGGAAATGGAGCCGATTATCGCGCTGACGATACACC
AGCAAGTTTCGAGGTTTCGCATGGCAGCACCATCATCAACCACAAACAAG
GAGGATGCCCAATTCAAGGACGTCGAAGGGCCTTGTGTTTCTTCTGCCCT
GAATTCGAGTAGTTTGTACGAAGTAAAAGCACCCCCATAGCGCCTTCGAG
TCTCGGAAGAGGGAGGGGAGGGAAAGGGTAAATCACCTTCATAACTCTGC
CCTGCGTCCTGCTTGGCAAATACTGCTCCACAGTTCCACGTTGGTAAGGC
CAGGGACCAGAAGAAGAAAGGGTACTCTTGTTGTTTCCCTACACGTGTGC
GTTGCGCGTCATGCACATACATTGCCGCTCTGAAGCTCGCATGTTTTCCA
AGCACTTTCTCACGGCAACAGCCTTGCTTGTAAGACTTGTTTTACTGGTG
TCTAGACCTGCCGTGCCGTGTTTCTGCCATTTGAATGGGGGGCTACCACC
CCAGCAGCGGTGATTGGCATGCTAGTCAATGCTGTGATACACTTGTAAGC
ATGTCCTTGAAGCTGGTTGTTGCCGACTTCGATATCATCCCTCCTGTGCA
ACATTTGAATTCGTCTCTAGTTACAGTCTGGTTTAGAATCATGGACGCTA
CCAGAGTACGCGCAGTAACCGAGCGGCAAAAGAACGATTGGCAATCCGGA
GAAAGAAAGCGTGCGGACGGGGGGGGAAGGACTAAGAGAGGGGACATCGA
AGAGGCGCAATGCTCACAGTTCCTATTTTTGGTGTCTTGGTTTTTGTCTG
CGTGCGGCTTGTTTGCACCTGAGGAATGCGCTTGACCCAATGACTGGTAT
GTATTGACCTTGAGTGTGTCTTTGTTTCAATAGATGTCGTATCGTCTCAG
GTCTAGTTACAGTAGGTCTGCCTACAGAAGAAGACCGTGCGGGTTGCCTG
ACCGGCCCACACCGTCAAACCTGCTGCGTGTATGGGGGACATTTGCCTGA
TCGGTCATATATCCGACAGAGCTCACCGGGCATACGTAGGGCGCGTAGAG
ACAAACCCTCTAGGTAAAATGGTCAATCTTGCTTCGCCCTTTTGGTTTGA
AGACAACAACAACAACGAAGATGGTCTACATGCACTCCTTTGACGCGAAT
GGGGCCTTCATTTGCCATCCGTGGC
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig100:31769..34443-

>mRNA_E-siliculosus-1a_F_contig100.55.1 ID=mRNA_E-siliculosus-1a_F_contig100.55.1|Name=mRNA_E-siliculosus-1a_F_contig100.55.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1224bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig100:31769..34443- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGGCCTTTCCACCAGTATCTGGTGGTCTTGACACGAATAGCACATTGTT
ATTGTTTATTGATAGCACGTGCTTACACAGAAACTGCCGCTTCTCCAATG
ACCTTCCATCCCTTTGTTTTGTCGAACGACGCGCGATGCAGCTATCTCCA
CTAGAGTTCTCGAGGAGGACGTGTGCAGAGCTTGGTATTGGGTTGTCGTT
TGTCCAGCCAATAGCTCAGTCTATTGGCCAACAACTGATAGAATATGGGC
GAAAGAACCCAATGTGGGCAGTGGAGGGAACAATTGCACCAGCGGGCGAA
AACATCCAGACTGTGATCATCGACGTACGCTTTCGATCAGTCATTTTTAG
AGATCGCTTGCAGTGGGATGTCAACTGCCCCTACAACAGCCCGGAGCAGT
TCGCGAGGATCACGGTGGCGGATTTAAATTTACCACAGATGGCCTTTCCA
CCAGTATCTGGTGGTCTTGACACGAATAGCACATTGTTATTGTTTATTGA
TAGCACGTGCTTACACAGAAACTGCCGCTTCTCCAATGACCTTCCATCCC
TTTGTTTTGTCGAACGACGCGCGATGCAGCTATCTCCACTAGAGTTCTCG
AGGAGGACGTGTGCAGAGCTTGGTATTGGGTTGTCGTTTGTCCAGCCAAT
AGCTCAGTCTATTGGCCAACAACTGATAGAATATGGGCGAAAGAACCCAA
TGTGGGCAGTGGAGGGAACAATTGCACCAGCGGGCGAAAACATCCAGACT
GTGATCATCGACGTACGCTTTCGATCAGTCATTTTTAGAGATCGCTTGCA
GTGGGATGTCAACTGCCCCTACAACAGCCCGGAGCAGTTCGCGAGGATCA
CGGTGGCGGATTTAAATTTACCACAGGAAATGGAGCCGATTATCGCGCTG
ACGATACACCAGCAAGTTTCGAGGTTTCGCATGGCAGCACCATCATCAAC
CACAAACAAGGAGGATGCCCAATTCAAGGACGTCGAAGGGCCTTGTGTTT
CTTCTGCCCTGAATTCGAGTAGTTTGTACGAAGTAAAAGCACCCCCATAG
GAAATGGAGCCGATTATCGCGCTGACGATACACCAGCAAGTTTCGAGGTT
TCGCATGGCAGCACCATCATCAACCACAAACAAGGAGGATGCCCAATTCA
AGGACGTCGAAGGGCCTTGTGTTTCTTCTGCCCTGAATTCGAGTAGTTTG
TACGAAGTAAAAGCACCCCCATAG
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