mRNA_E-siliculosus-1a_F_contig10776.543.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig10776.543.1
Unique NamemRNA_E-siliculosus-1a_F_contig10776.543.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig10776.543.1 vs. uniprot
Match: D7FYC0_ECTSI (GTPBP2, EF1alpha-like GTPase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYC0_ECTSI)

HSP 1 Score: 107 bits (266), Expect = 1.450e-25
Identity = 54/54 (100.00%), Postives = 54/54 (100.00%), Query Frame = 1 
Query:    1 RLGVLGHAGAGKSTLVSVLTKGMSDNGRGLARMQVFRHNHEVFNGQTSSISQQG 162
            RLGVLGHAGAGKSTLVSVLTKGMSDNGRGLARMQVFRHNHEVFNGQTSSISQQG
Sbjct:  340 RLGVLGHAGAGKSTLVSVLTKGMSDNGRGLARMQVFRHNHEVFNGQTSSISQQG 393
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BLAST of mRNA_E-siliculosus-1a_F_contig10776.543.1 vs. uniprot
Match: A0A6H5KZE4_9PHAE (Tr-type G domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZE4_9PHAE)

HSP 1 Score: 104 bits (260), Expect = 9.400e-25
Identity = 53/53 (100.00%), Postives = 53/53 (100.00%), Query Frame = 1 
Query:    1 RLGVLGHAGAGKSTLVSVLTKGMSDNGRGLARMQVFRHNHEVFNGQTSSISQQ 159
            RLGVLGHAGAGKSTLVSVLTKGMSDNGRGLARMQVFRHNHEVFNGQTSSISQQ
Sbjct:  431 RLGVLGHAGAGKSTLVSVLTKGMSDNGRGLARMQVFRHNHEVFNGQTSSISQQ 483
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BLAST of mRNA_E-siliculosus-1a_F_contig10776.543.1 vs. uniprot
Match: A0A835YVP3_9STRA (GTP binding protein 2 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YVP3_9STRA)

HSP 1 Score: 80.5 bits (197), Expect = 1.200e-16
Identity = 40/53 (75.47%), Postives = 46/53 (86.79%), Query Frame = 1 
Query:    1 RLGVLGHAGAGKSTLVSVLTKGMSDNGRGLARMQVFRHNHEVFNGQTSSISQQ 159
            R+ V+G  GAGKSTLV VLT+G +DNGRGLARMQVFRHNHEV +G+TSSIS Q
Sbjct:  123 RVAVVGQEGAGKSTLVGVLTRGKNDNGRGLARMQVFRHNHEVSDGRTSSISHQ 175
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BLAST of mRNA_E-siliculosus-1a_F_contig10776.543.1 vs. uniprot
Match: W7TQD6_9STRA (Gtp-binding protein 1 n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TQD6_9STRA)

HSP 1 Score: 73.6 bits (179), Expect = 8.610e-14
Identity = 38/52 (73.08%), Postives = 42/52 (80.77%), Query Frame = 1 
Query:    1 RLGVLGHAGAGKSTLVSVLTKGMSDNGRGLARMQVFRHNHEVFNGQTSSISQ 156
            R+ VLG    GKSTLV VLT G  DNG+GLARMQVFRHNHEV NG+TSS+SQ
Sbjct:  222 RVAVLGGEEGGKSTLVGVLTTGKLDNGQGLARMQVFRHNHEVENGRTSSVSQ 273
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BLAST of mRNA_E-siliculosus-1a_F_contig10776.543.1 vs. uniprot
Match: A0A6A5AA89_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A5AA89_9STRA)

HSP 1 Score: 70.1 bits (170), Expect = 1.990e-13
Identity = 34/53 (64.15%), Postives = 43/53 (81.13%), Query Frame = 1 
Query:    1 RLGVLGHAGAGKSTLVSVLTKGMSDNGRGLARMQVFRHNHEVFNGQTSSISQQ 159
            R+ V+G   +GKSTL+ VLT+G  D+G GLARMQVFRH HE+ NG+TSSIS+Q
Sbjct:   93 RVSVIGDVDSGKSTLIGVLTRGCLDDGNGLARMQVFRHLHEIENGRTSSISEQ 145
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BLAST of mRNA_E-siliculosus-1a_F_contig10776.543.1 vs. uniprot
Match: UPI0006451DAC (hypothetical protein n=1 Tax=Acytostelium subglobosum LB1 TaxID=1410327 RepID=UPI0006451DAC)

HSP 1 Score: 71.6 bits (174), Expect = 4.080e-13
Identity = 34/53 (64.15%), Postives = 44/53 (83.02%), Query Frame = 1 
Query:    1 RLGVLGHAGAGKSTLVSVLTKGMSDNGRGLARMQVFRHNHEVFNGQTSSISQQ 159
            R+ V+G+  AGKSTL+ VLT+G  DNGRGLARM +FRH HE+ +G+TSSISQ+
Sbjct:  220 RITVVGNVDAGKSTLLGVLTRGQLDNGRGLARMNIFRHKHEIESGRTSSISQE 272
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BLAST of mRNA_E-siliculosus-1a_F_contig10776.543.1 vs. uniprot
Match: A0A7S1CDI5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CDI5_9STRA)

HSP 1 Score: 68.9 bits (167), Expect = 4.350e-13
Identity = 33/51 (64.71%), Postives = 41/51 (80.39%), Query Frame = 1 
Query:    1 RLGVLGHAGAGKSTLVSVLTKGMSDNGRGLARMQVFRHNHEVFNGQTSSIS 153
            R+ V+G+  +GKSTL+ VLTKG  DNGRGL R+ VFRH HEV NG+TSS+S
Sbjct:   36 RVAVVGNVDSGKSTLIGVLTKGGLDNGRGLKRLDVFRHKHEVANGRTSSVS 86
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BLAST of mRNA_E-siliculosus-1a_F_contig10776.543.1 vs. uniprot
Match: A0A843BZB3_9ARCH (Elongation factor 1-alpha n=1 Tax=Candidatus Heimdallarchaeota archaeon TaxID=2026747 RepID=A0A843BZB3_9ARCH)

HSP 1 Score: 71.2 bits (173), Expect = 5.540e-13
Identity = 35/53 (66.04%), Postives = 43/53 (81.13%), Query Frame = 1 
Query:    1 RLGVLGHAGAGKSTLVSVLTKGMSDNGRGLARMQVFRHNHEVFNGQTSSISQQ 159
            R+ V+G+  +GKSTLV VLT+G  DNGRGLAR+ VFRH HE+  G+TSSISQQ
Sbjct:  121 RIAVVGNVDSGKSTLVGVLTQGKLDNGRGLARVNVFRHKHEIETGRTSSISQQ 173
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BLAST of mRNA_E-siliculosus-1a_F_contig10776.543.1 vs. uniprot
Match: A0A523TG70_9ARCH (Elongation factor 1-alpha n=1 Tax=Candidatus Heimdallarchaeota archaeon TaxID=2026747 RepID=A0A523TG70_9ARCH)

HSP 1 Score: 71.2 bits (173), Expect = 5.540e-13
Identity = 35/53 (66.04%), Postives = 43/53 (81.13%), Query Frame = 1 
Query:    1 RLGVLGHAGAGKSTLVSVLTKGMSDNGRGLARMQVFRHNHEVFNGQTSSISQQ 159
            R+ V+G+  +GKSTLV VLT+G  DNGRGLAR+ VFRH HE+  G+TSSISQQ
Sbjct:  121 RIAVVGNVDSGKSTLVGVLTQGKLDNGRGLARVNVFRHKHEIETGRTSSISQQ 173
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BLAST of mRNA_E-siliculosus-1a_F_contig10776.543.1 vs. uniprot
Match: D3AVT5_POLPP (GTP-binding protein 1 n=1 Tax=Polysphondylium pallidum (strain ATCC 26659 / Pp 5 / PN500) TaxID=670386 RepID=D3AVT5_POLPP)

HSP 1 Score: 70.9 bits (172), Expect = 7.610e-13
Identity = 35/53 (66.04%), Postives = 44/53 (83.02%), Query Frame = 1 
Query:    1 RLGVLGHAGAGKSTLVSVLTKGMSDNGRGLARMQVFRHNHEVFNGQTSSISQQ 159
            R+ V+G+  AGKSTL+ VLT+G  DNGRGLARM VFRH HE+ +G+TSSISQ+
Sbjct:  217 RVTVVGNVDAGKSTLLGVLTRGQLDNGRGLARMNVFRHKHELESGRTSSISQE 269
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig10776.543.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FYC0_ECTSI1.450e-25100.00GTPBP2, EF1alpha-like GTPase n=1 Tax=Ectocarpus si... [more]
A0A6H5KZE4_9PHAE9.400e-25100.00Tr-type G domain-containing protein n=1 Tax=Ectoca... [more]
A0A835YVP3_9STRA1.200e-1675.47GTP binding protein 2 n=1 Tax=Tribonema minus TaxI... [more]
W7TQD6_9STRA8.610e-1473.08Gtp-binding protein 1 n=2 Tax=Monodopsidaceae TaxI... [more]
A0A6A5AA89_9STRA1.990e-1364.15Uncharacterized protein (Fragment) n=1 Tax=Aphanom... [more]
UPI0006451DAC4.080e-1364.15hypothetical protein n=1 Tax=Acytostelium subglobo... [more]
A0A7S1CDI5_9STRA4.350e-1364.71Hypothetical protein (Fragment) n=1 Tax=Bicosoecid... [more]
A0A843BZB3_9ARCH5.540e-1366.04Elongation factor 1-alpha n=1 Tax=Candidatus Heimd... [more]
A0A523TG70_9ARCH5.540e-1366.04Elongation factor 1-alpha n=1 Tax=Candidatus Heimd... [more]
D3AVT5_POLPP7.610e-1366.04GTP-binding protein 1 n=1 Tax=Polysphondylium pall... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig10776contigE-siliculosus-1a_F_contig10776:449..631 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start0
Stop1
Cds size183
Model size183
Exons1
Hectar predicted targeting categoryother localisation
Best eggNOG OGNA|NA|NA
Best tax levelEukaryota
COG Functional cat.J
EggNOG OGsCOG5258@1,KOG0463@2759
EggNOG free text desc.GTP metabolic process
Seed eggNOG ortholog2880.D7FYC0
Seed ortholog evalue1.4e-21
Seed ortholog score108.2
Taxonomic scopeEukaryota
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927578.6859334-CDS-E-siliculosus-1a_F_contig10776:448..6311622927578.6859334-CDS-E-siliculosus-1a_F_contig10776:448..631Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig10776 449..631 +
1696318594.892148-CDS-E-siliculosus-1a_F_contig10776:448..6311696318594.892148-CDS-E-siliculosus-1a_F_contig10776:448..631Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig10776 449..631 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig10776.543.1prot_E-siliculosus-1a_F_contig10776.543.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig10776 449..631 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig10776.543.1

>prot_E-siliculosus-1a_F_contig10776.543.1 ID=prot_E-siliculosus-1a_F_contig10776.543.1|Name=mRNA_E-siliculosus-1a_F_contig10776.543.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=61bp
RLGVLGHAGAGKSTLVSVLTKGMSDNGRGLARMQVFRHNHEVFNGQTSSI
SQQGRLHASW*
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mRNA from alignment at E-siliculosus-1a_F_contig10776:449..631+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig10776.543.1 ID=mRNA_E-siliculosus-1a_F_contig10776.543.1|Name=mRNA_E-siliculosus-1a_F_contig10776.543.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=183bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig10776:449..631+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
AGGCTGGGCGTTCTAGGCCACGCTGGCGCGGGCAAGAGCACTCTCGTCAG
CGTCCTCACCAAAGGCATGAGCGACAACGGAAGGGGGCTCGCGCGCATGC
AGGTCTTCCGGCATAATCACGAGGTCTTCAACGGTCAGACCAGCAGCATC
TCTCAGCAAGGTAGGTTACATGCGTCGTGGTGA
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig10776:449..631+

>mRNA_E-siliculosus-1a_F_contig10776.543.1 ID=mRNA_E-siliculosus-1a_F_contig10776.543.1|Name=mRNA_E-siliculosus-1a_F_contig10776.543.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=366bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig10776:449..631+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
AGGCTGGGCGTTCTAGGCCACGCTGGCGCGGGCAAGAGCACTCTCGTCAG
CGTCCTCACCAAAGGCATGAGCGACAACGGAAGGGGGCTCGCGCGCATGC
AGGTCTTCCGGCATAATCACGAGGTCTTCAACGGTCAGACCAGCAGCATC
TCTCAGCAAGGTAGGTTACATGCGTCGTGGTGAAGGCTGGGCGTTCTAGG
CCACGCTGGCGCGGGCAAGAGCACTCTCGTCAGCGTCCTCACCAAAGGCA
TGAGCGACAACGGAAGGGGGCTCGCGCGCATGCAGGTCTTCCGGCATAAT
CACGAGGTCTTCAACGGTCAGACCAGCAGCATCTCTCAGCAAGGTAGGTT
ACATGCGTCGTGGTGA
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